data_8BJ9 # _model_server_result.job_id jTsfyFigU_AVw6IR14hjsA _model_server_result.datetime_utc '2024-11-23 23:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8BJ9 # _exptl.entry_id 8BJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.388 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-pentane-1,5-diylbis(2,3-dihydroxybenzamide)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BJ9 _cell.length_a 36.063 _cell.length_b 117.392 _cell.length_c 141.712 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 54 A LEU 54 1_555 G NI NI . A NI 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A OD2 ASP 88 A ASP 88 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc3 A OD2 ASP 88 A ASP 88 1_555 D NI NI . A NI 303 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 A OE2 GLU 90 A GLU 90 1_555 E NI NI . A NI 304 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 A OE1 GLU 94 A GLU 94 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc6 A OE2 GLU 94 A GLU 94 1_555 E NI NI . A NI 304 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc7 A OE2 GLU 111 A GLU 111 1_555 G NI NI . A NI 306 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc8 A OE1 GLU 151 A GLU 151 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc9 A OE1 GLU 151 A GLU 151 1_555 F NI NI . A NI 305 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc10 A OE2 GLU 155 A GLU 155 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc11 A OE1 GLU 155 A GLU 155 1_555 F NI NI . A NI 305 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 A OE2 GLU 155 A GLU 155 1_555 F NI NI . A NI 305 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc13 A NE2 HIS 215 A HIS 215 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc14 A OH TYR 276 A TYR 276 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc15 B FE FE . A FE 301 1_555 C O25 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc16 B FE FE . A FE 301 1_555 C O26 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc17 B FE FE . A FE 301 1_555 C O23 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc18 B FE FE . A FE 301 1_555 C O24 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc19 D NI NI . A NI 303 1_555 H O3 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc20 D NI NI . A NI 303 1_555 H O3 SO4 . A SO4 307 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc21 D NI NI . A NI 303 1_555 I O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc22 D NI NI . A NI 303 1_555 I O HOH . A HOH 412 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc23 E NI NI . A NI 304 1_555 H O1 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc24 E NI NI . A NI 304 1_555 H O2 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc25 E NI NI . A NI 304 1_555 H S SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc26 E NI NI . A NI 304 1_555 H O4 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc27 E NI NI . A NI 304 1_555 H S SO4 . A SO4 307 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc28 E NI NI . A NI 304 1_555 H O4 SO4 . A SO4 307 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'C19 H22 N2 O6' _chem_comp.formula_weight 374.388 _chem_comp.id 5LC _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-pentane-1,5-diylbis(2,3-dihydroxybenzamide)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 5LC sing 1 n y C1 C6 5LC doub 2 n y C2 C3 5LC doub 3 n y C2 O26 5LC sing 4 n n C3 C4 5LC sing 5 n y C3 O25 5LC sing 6 n n C4 C5 5LC doub 7 n y C4 C7 5LC sing 8 n n C5 C6 5LC sing 9 n y C7 N8 5LC sing 10 n n C7 O9 5LC doub 11 n n N8 C10 5LC sing 12 n n C10 C11 5LC sing 13 n n C11 C12 5LC sing 14 n n C12 C23 5LC sing 15 n n N14 C15 5LC sing 16 n n N14 C13 5LC sing 17 n n C15 C16 5LC sing 18 n n C15 O17 5LC doub 19 n n C16 C18 5LC sing 20 n y C16 C22 5LC doub 21 n y C18 C19 5LC doub 22 n y C18 O23 5LC sing 23 n n C19 C20 5LC sing 24 n y C19 O24 5LC sing 25 n n C20 C21 5LC doub 26 n y C21 C22 5LC sing 27 n y C23 C13 5LC sing 28 n n O23 H23 5LC sing 29 n n C1 H1 5LC sing 30 n n C6 H6 5LC sing 31 n n O26 H26 5LC sing 32 n n O25 H25 5LC sing 33 n n C5 H5 5LC sing 34 n n N8 H8 5LC sing 35 n n C10 H101 5LC sing 36 n n C10 H102 5LC sing 37 n n C11 H111 5LC sing 38 n n C11 H112 5LC sing 39 n n C12 H121 5LC sing 40 n n C12 H122 5LC sing 41 n n C23 H231 5LC sing 42 n n C23 H232 5LC sing 43 n n N14 H14 5LC sing 44 n n C13 H131 5LC sing 45 n n C13 H132 5LC sing 46 n n C22 H22 5LC sing 47 n n C20 H20 5LC sing 48 n n O24 H24 5LC sing 49 n n C21 H21 5LC sing 50 n n # _atom_sites.entry_id 8BJ9 _atom_sites.fract_transf_matrix[1][1] 0.027729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 300 FE FE . C 3 5LC A 1 302 301 5LC 5LC . D 4 NI A 1 303 305 NI NI . E 4 NI A 1 304 306 NI NI . F 4 NI A 1 305 307 NI NI . G 4 NI A 1 306 308 NI NI . H 5 SO4 A 1 307 310 SO4 SO4 . I 6 HOH A 1 401 9 HOH HOH . I 6 HOH A 2 402 8 HOH HOH . I 6 HOH A 3 403 3 HOH HOH . I 6 HOH A 4 404 12 HOH HOH . I 6 HOH A 5 405 6 HOH HOH . I 6 HOH A 6 406 11 HOH HOH . I 6 HOH A 7 407 4 HOH HOH . I 6 HOH A 8 408 5 HOH HOH . I 6 HOH A 9 409 2 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 7 HOH HOH . I 6 HOH A 12 412 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5LC . . . C 3 2.807 7.89 -26.186 1 72.94 0 C1 5LC 302 A 1 HETATM 2 C C2 5LC . . . C 3 1.93 8.756 -25.561 1 72.04 0 C2 5LC 302 A 1 HETATM 3 C C3 5LC . . . C 3 0.797 9.212 -26.242 1 77.48 0 C3 5LC 302 A 1 HETATM 4 C C4 5LC . . . C 3 0.546 8.797 -27.561 1 75.41 0 C4 5LC 302 A 1 HETATM 5 C C5 5LC . . . C 3 1.453 7.917 -28.163 1 74.31 0 C5 5LC 302 A 1 HETATM 6 C C6 5LC . . . C 3 2.56 7.475 -27.497 1 71.57 0 C6 5LC 302 A 1 HETATM 7 C C7 5LC . . . C 3 -0.667 9.243 -28.293 1 84.54 0 C7 5LC 302 A 1 HETATM 8 N N8 5LC . . . C 3 -1.724 9.59 -27.555 1 82.96 0 N8 5LC 302 A 1 HETATM 9 O O9 5LC . . . C 3 -0.704 9.184 -29.523 1 91.27 0 O9 5LC 302 A 1 HETATM 10 C C10 5LC . . . C 3 -3.07 9.709 -28.082 1 81.38 0 C10 5LC 302 A 1 HETATM 11 C C11 5LC . . . C 3 -4.079 9.925 -26.965 1 85.38 0 C11 5LC 302 A 1 HETATM 12 C C12 5LC . . . C 3 -3.634 9.283 -25.655 1 84.39 0 C12 5LC 302 A 1 HETATM 13 N N14 5LC . . . C 3 -3.132 8.224 -22.928 1 76.74 0 N14 5LC 302 A 1 HETATM 14 C C15 5LC . . . C 3 -2.93 7.897 -21.646 1 73.57 0 C15 5LC 302 A 1 HETATM 15 C C16 5LC . . . C 3 -1.598 8.164 -21.037 1 69.98 0 C16 5LC 302 A 1 HETATM 16 O O17 5LC . . . C 3 -3.827 7.432 -20.944 1 77.55 0 O17 5LC 302 A 1 HETATM 17 C C18 5LC . . . C 3 -0.639 8.916 -21.729 1 66.81 0 C18 5LC 302 A 1 HETATM 18 C C19 5LC . . . C 3 0.599 9.192 -21.149 1 66.29 0 C19 5LC 302 A 1 HETATM 19 C C20 5LC . . . C 3 0.888 8.711 -19.882 1 64.97 0 C20 5LC 302 A 1 HETATM 20 C C21 5LC . . . C 3 -0.061 7.96 -19.187 1 64.48 0 C21 5LC 302 A 1 HETATM 21 C C22 5LC . . . C 3 -1.276 7.701 -19.754 1 66.91 0 C22 5LC 302 A 1 HETATM 22 O O23 5LC . . . C 3 -0.833 9.419 -22.994 1 67.54 0 O23 5LC 302 A 1 HETATM 23 O O24 5LC . . . C 3 1.451 9.932 -21.935 1 63.67 0 O24 5LC 302 A 1 HETATM 24 C C23 5LC . . . C 3 -4.703 9.158 -24.595 1 85.8 0 C23 5LC 302 A 1 HETATM 25 O O25 5LC . . . C 3 -0.006 10.068 -25.508 1 76.64 0 O25 5LC 302 A 1 HETATM 26 C C13 5LC . . . C 3 -4.43 8.074 -23.569 1 80.28 0 C13 5LC 302 A 1 HETATM 27 O O26 5LC . . . C 3 2.084 9.179 -24.256 1 72.12 0 O26 5LC 302 A 1 HETATM 28 H H1 5LC . . . C 3 3.569 7.582 -25.726 1 71.17 0 H1 5LC 302 A 1 HETATM 29 H H6 5LC . . . C 3 3.16 6.892 -27.92 1 71.33 0 H6 5LC 302 A 1 HETATM 30 H H26 5LC . . . C 3 2.829 9.498 -23.99 1 71.92 0 H26 5LC 302 A 1 HETATM 31 H H25 5LC . . . C 3 -0.72 10.389 -25.878 0 30 0 H25 5LC 302 A 1 HETATM 32 H H5 5LC . . . C 3 1.298 7.634 -29.047 1 74.15 0 H5 5LC 302 A 1 HETATM 33 H H8 5LC . . . C 3 -1.592 9.785 -26.719 1 82.6 0 H8 5LC 302 A 1 HETATM 34 H H101 5LC . . . C 3 -3.298 8.892 -28.575 1 82.24 0 H101 5LC 302 A 1 HETATM 35 H H102 5LC . . . C 3 -3.108 10.464 -28.707 1 84.2 0 H102 5LC 302 A 1 HETATM 36 H H111 5LC . . . C 3 -4.942 9.543 -27.235 1 85.73 0 H111 5LC 302 A 1 HETATM 37 H H112 5LC . . . C 3 -4.203 10.888 -26.826 1 86.39 0 H112 5LC 302 A 1 HETATM 38 H H121 5LC . . . C 3 -2.897 9.812 -25.283 1 83.87 0 H121 5LC 302 A 1 HETATM 39 H H122 5LC . . . C 3 -3.285 8.387 -25.85 1 82.7 0 H122 5LC 302 A 1 HETATM 40 H H231 5LC . . . C 3 -5.561 8.969 -25.031 1 85.95 0 H231 5LC 302 A 1 HETATM 41 H H232 5LC . . . C 3 -4.788 10.017 -24.129 1 86.06 0 H232 5LC 302 A 1 HETATM 42 H H14 5LC . . . C 3 -2.47 8.539 -23.396 1 76.01 0 H14 5LC 302 A 1 HETATM 43 H H131 5LC . . . C 3 -5.133 8.098 -22.885 1 81.84 0 H131 5LC 302 A 1 HETATM 44 H H132 5LC . . . C 3 -4.469 7.198 -24.009 1 79.76 0 H132 5LC 302 A 1 HETATM 45 H H22 5LC . . . C 3 -1.913 7.2 -19.275 1 67.63 0 H22 5LC 302 A 1 HETATM 46 H H20 5LC . . . C 3 1.727 8.89 -19.494 1 64.63 0 H20 5LC 302 A 1 HETATM 47 H H24 5LC . . . C 3 2.235 10.139 -21.654 0 30 0 H24 5LC 302 A 1 HETATM 48 H H21 5LC . . . C 3 0.134 7.643 -18.326 1 65.09 0 H21 5LC 302 A 1 HETATM 49 H H23 5LC . . . C 3 -0.242 9.266 -23.598 1 66.85 0 H23 5LC 302 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #