data_8BJ9 # _model_server_result.job_id wjPiqECT1EOaOx_hcn86rA _model_server_result.datetime_utc '2024-11-09 23:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8BJ9 # _exptl.entry_id 8BJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BJ9 _cell.length_a 36.063 _cell.length_b 117.392 _cell.length_c 141.712 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 54 A LEU 54 1_555 G NI NI . A NI 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A OD2 ASP 88 A ASP 88 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc3 A OD2 ASP 88 A ASP 88 1_555 D NI NI . A NI 303 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 A OE2 GLU 90 A GLU 90 1_555 E NI NI . A NI 304 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 A OE1 GLU 94 A GLU 94 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc6 A OE2 GLU 94 A GLU 94 1_555 E NI NI . A NI 304 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc7 A OE2 GLU 111 A GLU 111 1_555 G NI NI . A NI 306 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc8 A OE1 GLU 151 A GLU 151 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc9 A OE1 GLU 151 A GLU 151 1_555 F NI NI . A NI 305 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc10 A OE2 GLU 155 A GLU 155 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc11 A OE1 GLU 155 A GLU 155 1_555 F NI NI . A NI 305 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 A OE2 GLU 155 A GLU 155 1_555 F NI NI . A NI 305 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc13 A NE2 HIS 215 A HIS 215 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc14 A OH TYR 276 A TYR 276 1_555 B FE FE . A FE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc15 B FE FE . A FE 301 1_555 C O25 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc16 B FE FE . A FE 301 1_555 C O26 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc17 B FE FE . A FE 301 1_555 C O23 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc18 B FE FE . A FE 301 1_555 C O24 5LC . A 5LC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc19 D NI NI . A NI 303 1_555 H O3 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc20 D NI NI . A NI 303 1_555 H O3 SO4 . A SO4 307 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc21 D NI NI . A NI 303 1_555 I O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc22 D NI NI . A NI 303 1_555 I O HOH . A HOH 412 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc23 E NI NI . A NI 304 1_555 H O1 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc24 E NI NI . A NI 304 1_555 H O2 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc25 E NI NI . A NI 304 1_555 H S SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc26 E NI NI . A NI 304 1_555 H O4 SO4 . A SO4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc27 E NI NI . A NI 304 1_555 H S SO4 . A SO4 307 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc28 E NI NI . A NI 304 1_555 H O4 SO4 . A SO4 307 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BJ9 _atom_sites.fract_transf_matrix[1][1] 0.027729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 301 300 FE FE . C 3 5LC A 1 302 301 5LC 5LC . D 4 NI A 1 303 305 NI NI . E 4 NI A 1 304 306 NI NI . F 4 NI A 1 305 307 NI NI . G 4 NI A 1 306 308 NI NI . H 5 SO4 A 1 307 310 SO4 SO4 . I 6 HOH A 1 401 9 HOH HOH . I 6 HOH A 2 402 8 HOH HOH . I 6 HOH A 3 403 3 HOH HOH . I 6 HOH A 4 404 12 HOH HOH . I 6 HOH A 5 405 6 HOH HOH . I 6 HOH A 6 406 11 HOH HOH . I 6 HOH A 7 407 4 HOH HOH . I 6 HOH A 8 408 5 HOH HOH . I 6 HOH A 9 409 2 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 7 HOH HOH . I 6 HOH A 12 412 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 0.001 _atom_site.Cartn_y -8.787 _atom_site.Cartn_z -35.427 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 61.61 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #