data_8BJC # _model_server_result.job_id pibUiEZgSoZ46okpuZxuQg _model_server_result.datetime_utc '2024-11-21 17:11:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8BJC # _exptl.entry_id 8BJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BJC _cell.length_a 77.773 _cell.length_b 77.773 _cell.length_c 103.789 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 158 B GLU 164 1_555 F ZN ZN . B ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc2 A OE2 GLU 158 B GLU 164 1_555 F ZN ZN . B ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc3 A NE2 HIS 199 B HIS 205 1_555 F ZN ZN . B ZN 305 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc4 F ZN ZN . B ZN 305 1_555 G O HOH . B HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 8BJC _atom_sites.fract_transf_matrix[1][1] 0.012858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL B 1 301 306 GOL GOL . C 3 EPE B 1 302 308 EPE EPE . D 4 MES B 1 303 309 MES MES . E 3 EPE B 1 304 310 EPE EPE . F 5 ZN B 1 305 1 ZN ZN . G 6 HOH B 1 401 112 HOH HOH . G 6 HOH B 2 402 72 HOH HOH . G 6 HOH B 3 403 28 HOH HOH . G 6 HOH B 4 404 119 HOH HOH . G 6 HOH B 5 405 82 HOH HOH . G 6 HOH B 6 406 46 HOH HOH . G 6 HOH B 7 407 124 HOH HOH . G 6 HOH B 8 408 48 HOH HOH . G 6 HOH B 9 409 42 HOH HOH . G 6 HOH B 10 410 41 HOH HOH . G 6 HOH B 11 411 11 HOH HOH . G 6 HOH B 12 412 3 HOH HOH . G 6 HOH B 13 413 4 HOH HOH . G 6 HOH B 14 414 30 HOH HOH . G 6 HOH B 15 415 127 HOH HOH . G 6 HOH B 16 416 12 HOH HOH . G 6 HOH B 17 417 43 HOH HOH . G 6 HOH B 18 418 2 HOH HOH . G 6 HOH B 19 419 34 HOH HOH . G 6 HOH B 20 420 59 HOH HOH . G 6 HOH B 21 421 77 HOH HOH . G 6 HOH B 22 422 6 HOH HOH . G 6 HOH B 23 423 114 HOH HOH . G 6 HOH B 24 424 38 HOH HOH . G 6 HOH B 25 425 50 HOH HOH . G 6 HOH B 26 426 16 HOH HOH . G 6 HOH B 27 427 63 HOH HOH . G 6 HOH B 28 428 22 HOH HOH . G 6 HOH B 29 429 142 HOH HOH . G 6 HOH B 30 430 27 HOH HOH . G 6 HOH B 31 431 25 HOH HOH . G 6 HOH B 32 432 8 HOH HOH . G 6 HOH B 33 433 81 HOH HOH . G 6 HOH B 34 434 1 HOH HOH . G 6 HOH B 35 435 139 HOH HOH . G 6 HOH B 36 436 75 HOH HOH . G 6 HOH B 37 437 23 HOH HOH . G 6 HOH B 38 438 64 HOH HOH . G 6 HOH B 39 439 20 HOH HOH . G 6 HOH B 40 440 76 HOH HOH . G 6 HOH B 41 441 17 HOH HOH . G 6 HOH B 42 442 69 HOH HOH . G 6 HOH B 43 443 47 HOH HOH . G 6 HOH B 44 444 36 HOH HOH . G 6 HOH B 45 445 150 HOH HOH . G 6 HOH B 46 446 40 HOH HOH . G 6 HOH B 47 447 19 HOH HOH . G 6 HOH B 48 448 52 HOH HOH . G 6 HOH B 49 449 85 HOH HOH . G 6 HOH B 50 450 136 HOH HOH . G 6 HOH B 51 451 9 HOH HOH . G 6 HOH B 52 452 143 HOH HOH . G 6 HOH B 53 453 5 HOH HOH . G 6 HOH B 54 454 104 HOH HOH . G 6 HOH B 55 455 18 HOH HOH . G 6 HOH B 56 456 49 HOH HOH . G 6 HOH B 57 457 15 HOH HOH . G 6 HOH B 58 458 7 HOH HOH . G 6 HOH B 59 459 24 HOH HOH . G 6 HOH B 60 460 26 HOH HOH . G 6 HOH B 61 461 39 HOH HOH . G 6 HOH B 62 462 29 HOH HOH . G 6 HOH B 63 463 54 HOH HOH . G 6 HOH B 64 464 110 HOH HOH . G 6 HOH B 65 465 31 HOH HOH . G 6 HOH B 66 466 53 HOH HOH . G 6 HOH B 67 467 87 HOH HOH . G 6 HOH B 68 468 37 HOH HOH . G 6 HOH B 69 469 152 HOH HOH . G 6 HOH B 70 470 55 HOH HOH . G 6 HOH B 71 471 90 HOH HOH . G 6 HOH B 72 472 10 HOH HOH . G 6 HOH B 73 473 103 HOH HOH . G 6 HOH B 74 474 109 HOH HOH . G 6 HOH B 75 475 117 HOH HOH . G 6 HOH B 76 476 62 HOH HOH . G 6 HOH B 77 477 61 HOH HOH . G 6 HOH B 78 478 153 HOH HOH . G 6 HOH B 79 479 21 HOH HOH . G 6 HOH B 80 480 120 HOH HOH . G 6 HOH B 81 481 148 HOH HOH . G 6 HOH B 82 482 115 HOH HOH . G 6 HOH B 83 483 95 HOH HOH . G 6 HOH B 84 484 149 HOH HOH . G 6 HOH B 85 485 131 HOH HOH . G 6 HOH B 86 486 101 HOH HOH . G 6 HOH B 87 487 13 HOH HOH . G 6 HOH B 88 488 65 HOH HOH . G 6 HOH B 89 489 126 HOH HOH . G 6 HOH B 90 490 68 HOH HOH . G 6 HOH B 91 491 99 HOH HOH . G 6 HOH B 92 492 98 HOH HOH . G 6 HOH B 93 493 144 HOH HOH . G 6 HOH B 94 494 106 HOH HOH . G 6 HOH B 95 495 14 HOH HOH . G 6 HOH B 96 496 125 HOH HOH . G 6 HOH B 97 497 84 HOH HOH . G 6 HOH B 98 498 147 HOH HOH . G 6 HOH B 99 499 113 HOH HOH . G 6 HOH B 100 500 51 HOH HOH . G 6 HOH B 101 501 93 HOH HOH . G 6 HOH B 102 502 146 HOH HOH . G 6 HOH B 103 503 151 HOH HOH . G 6 HOH B 104 504 133 HOH HOH . G 6 HOH B 105 505 88 HOH HOH . G 6 HOH B 106 506 67 HOH HOH . G 6 HOH B 107 507 145 HOH HOH . G 6 HOH B 108 508 35 HOH HOH . G 6 HOH B 109 509 135 HOH HOH . G 6 HOH B 110 510 105 HOH HOH . G 6 HOH B 111 511 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 19.405 5.251 -19.497 1 41.28 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . B 2 18.653 4.372 -20.28 1 45.16 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . B 2 20.809 5.272 -20.09 1 42.23 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . B 2 21.58 6.275 -19.511 1 43.8 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . B 2 21.408 3.89 -19.827 1 44.1 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . B 2 22.247 4.015 -18.705 1 42.25 ? O3 GOL 301 B 1 HETATM 7 H H11 GOL . . . B 2 19.452 4.978 -18.567 1 50.25 ? H11 GOL 301 B 1 HETATM 8 H H12 GOL . . . B 2 19.044 6.151 -19.491 1 50.25 ? H12 GOL 301 B 1 HETATM 9 H HO1 GOL . . . B 2 17.987 4.143 -19.807 1 54.89 ? HO1 GOL 301 B 1 HETATM 10 H H2 GOL . . . B 2 20.764 5.445 -21.044 1 51.38 ? H2 GOL 301 B 1 HETATM 11 H HO2 GOL . . . B 2 22.026 5.914 -18.873 1 53.27 ? HO2 GOL 301 B 1 HETATM 12 H H31 GOL . . . B 2 21.874 3.593 -20.624 1 53.62 ? H31 GOL 301 B 1 HETATM 13 H H32 GOL . . . B 2 20.687 3.255 -19.699 1 53.62 ? H32 GOL 301 B 1 HETATM 14 H HO3 GOL . . . B 2 21.821 3.73 -18.033 1 51.4 ? HO3 GOL 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #