data_8BJD # _model_server_result.job_id 8vaH9zV0vUZmX_bPsW2H0Q _model_server_result.datetime_utc '2024-11-21 22:43:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8BJD # _exptl.entry_id 8BJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.396 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BJD _cell.length_a 76.752 _cell.length_b 76.752 _cell.length_c 103.597 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 51.7985 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 137 A ASP 142 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A OE1 GLU 159 A GLU 164 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc3 A OE2 GLU 159 A GLU 164 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc4 A NE2 HIS 200 A HIS 205 1_555 E ZN ZN . A ZN 304 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C21 H23 Cl2 N3 O4 S' _chem_comp.formula_weight 484.396 _chem_comp.id 9QN _chem_comp.mon_nstd_flag . _chem_comp.name (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBC CBD 9QN doub 1 n y CBC CBB 9QN sing 2 n y CBD CBE 9QN sing 3 n y CL2 CAR 9QN sing 4 n n CBB NBA 9QN doub 5 n y CAQ CAR 9QN doub 6 n y CAQ CAP 9QN sing 7 n y CL1 CAP 9QN sing 8 n n CAR CAS 9QN sing 9 n y CBE CAZ 9QN doub 10 n y CAP CAO 9QN doub 11 n y NBA CAZ 9QN sing 12 n y CAZ CAY 9QN sing 13 n n CAS CAN 9QN doub 14 n y OAX CAW 9QN sing 15 n n CAO CAN 9QN sing 16 n y CAN SAK 9QN sing 17 n n CAE NAF 9QN sing 18 n n CAE CAD 9QN sing 19 n n CAY NAF 9QN sing 20 n n CAW CAD 9QN sing 21 n n NAF C 9QN sing 22 n n CAD CAC 9QN sing 23 n n SAK N 9QN sing 24 n n SAK OAM 9QN doub 25 n n SAK OAL 9QN doub 26 n n N CAC 9QN sing 27 n n N CA 9QN sing 28 n n C O 9QN doub 29 n n C CA 9QN sing 30 n n CAC CAI 9QN sing 31 n n CA CB 9QN sing 32 n n CAI CAH 9QN sing 33 n n CB CAH 9QN sing 34 n n CAO H1 9QN sing 35 n n CAQ H2 9QN sing 36 n n CAS H3 9QN sing 37 n n CA H4 9QN sing 38 n n CB H5 9QN sing 39 n n CB H6 9QN sing 40 n n CAH H7 9QN sing 41 n n CAH H8 9QN sing 42 n n CAI H9 9QN sing 43 n n CAI H10 9QN sing 44 n n CAC H11 9QN sing 45 n n CAD H12 9QN sing 46 n n CAW H13 9QN sing 47 n n CAW H14 9QN sing 48 n n OAX H15 9QN sing 49 n n CAE H16 9QN sing 50 n n CAE H17 9QN sing 51 n n CAY H18 9QN sing 52 n n CAY H19 9QN sing 53 n n CBB H20 9QN sing 54 n n CBC H21 9QN sing 55 n n CBD H22 9QN sing 56 n n CBE H23 9QN sing 57 n n # _atom_sites.entry_id 8BJD _atom_sites.fract_transf_matrix[1][1] 0.013029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9QN A 1 301 307 9QN 9QN . C 3 MES A 1 302 308 MES MES . D 4 ZN A 1 303 2 ZN ZN . E 4 ZN A 1 304 3 ZN ZN . F 5 GOL A 1 305 1 GOL GOL . G 6 HOH A 1 401 46 HOH HOH . G 6 HOH A 2 402 24 HOH HOH . G 6 HOH A 3 403 8 HOH HOH . G 6 HOH A 4 404 37 HOH HOH . G 6 HOH A 5 405 23 HOH HOH . G 6 HOH A 6 406 25 HOH HOH . G 6 HOH A 7 407 33 HOH HOH . G 6 HOH A 8 408 31 HOH HOH . G 6 HOH A 9 409 12 HOH HOH . G 6 HOH A 10 410 27 HOH HOH . G 6 HOH A 11 411 26 HOH HOH . G 6 HOH A 12 412 47 HOH HOH . G 6 HOH A 13 413 14 HOH HOH . G 6 HOH A 14 414 45 HOH HOH . G 6 HOH A 15 415 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAO 9QN . . . B 2 2.19 22.674 16.15 1 48.29 ? CAO 9QN 301 A 1 HETATM 2 C CAP 9QN . . . B 2 2.269 21.297 16.252 1 55.77 ? CAP 9QN 301 A 1 HETATM 3 CL CL1 9QN . . . B 2 2.725 20.579 17.77 1 61.91 ? CL1 9QN 301 A 1 HETATM 4 C CAQ 9QN . . . B 2 1.993 20.465 15.182 1 54.57 ? CAQ 9QN 301 A 1 HETATM 5 C CAR 9QN . . . B 2 1.633 21.062 13.989 1 55.66 ? CAR 9QN 301 A 1 HETATM 6 CL CL2 9QN . . . B 2 1.272 20.052 12.618 1 81.17 ? CL2 9QN 301 A 1 HETATM 7 C CAS 9QN . . . B 2 1.546 22.435 13.854 1 52.67 ? CAS 9QN 301 A 1 HETATM 8 C CAN 9QN . . . B 2 1.833 23.244 14.94 1 50.23 ? CAN 9QN 301 A 1 HETATM 9 S SAK 9QN . . . B 2 1.713 25.002 14.789 1 47.73 ? SAK 9QN 301 A 1 HETATM 10 O OAL 9QN . . . B 2 2.525 25.578 15.815 1 40.42 ? OAL 9QN 301 A 1 HETATM 11 O OAM 9QN . . . B 2 1.958 25.347 13.424 1 44.17 ? OAM 9QN 301 A 1 HETATM 12 N N 9QN . . . B 2 0.158 25.406 15.123 1 39.92 ? N 9QN 301 A 1 HETATM 13 C CA 9QN . . . B 2 -0.079 26.471 16.109 1 40.93 ? CA 9QN 301 A 1 HETATM 14 C C 9QN . . . B 2 -1.39 26.309 16.881 1 41.69 ? C 9QN 301 A 1 HETATM 15 O O 9QN . . . B 2 -1.763 27.209 17.636 1 38.58 ? O 9QN 301 A 1 HETATM 16 C CB 9QN . . . B 2 -0.032 27.843 15.42 1 39.17 ? CB 9QN 301 A 1 HETATM 17 C CAH 9QN . . . B 2 -0.471 27.778 13.961 1 40.02 ? CAH 9QN 301 A 1 HETATM 18 C CAI 9QN . . . B 2 -1.494 26.669 13.784 1 42.47 ? CAI 9QN 301 A 1 HETATM 19 C CAC 9QN . . . B 2 -0.879 25.299 14.067 1 43.41 ? CAC 9QN 301 A 1 HETATM 20 C CAD 9QN . . . B 2 -1.901 24.218 14.459 1 39.13 ? CAD 9QN 301 A 1 HETATM 21 C CAW 9QN . . . B 2 -1.827 22.924 13.67 1 50.38 ? CAW 9QN 301 A 1 HETATM 22 O OAX 9QN . . . B 2 -2.233 23.108 12.324 1 54.43 ? OAX 9QN 301 A 1 HETATM 23 C CAE 9QN . . . B 2 -1.744 23.992 15.965 1 43.25 ? CAE 9QN 301 A 1 HETATM 24 N NAF 9QN . . . B 2 -2.14 25.207 16.698 1 41.87 ? NAF 9QN 301 A 1 HETATM 25 C CAY 9QN . . . B 2 -3.481 25.185 17.261 1 40.34 ? CAY 9QN 301 A 1 HETATM 26 C CAZ 9QN . . . B 2 -3.467 24.505 18.601 1 46.62 ? CAZ 9QN 301 A 1 HETATM 27 N NBA 9QN . . . B 2 -4.38 24.925 19.486 1 54.54 ? NBA 9QN 301 A 1 HETATM 28 C CBB 9QN . . . B 2 -4.389 24.344 20.695 1 58.53 ? CBB 9QN 301 A 1 HETATM 29 C CBC 9QN . . . B 2 -3.513 23.35 21.057 1 61.12 ? CBC 9QN 301 A 1 HETATM 30 C CBD 9QN . . . B 2 -2.58 22.93 20.14 1 58.25 ? CBD 9QN 301 A 1 HETATM 31 C CBE 9QN . . . B 2 -2.551 23.516 18.891 1 41.42 ? CBE 9QN 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #