data_8BJE # _model_server_result.job_id GQfIcIYLXRfmyJLi4oksjA _model_server_result.datetime_utc '2024-11-21 22:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8BJE # _exptl.entry_id 8BJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.423 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-[(1~{S})-1-pyridin-2-ylethyl]-3,10-diazabicyclo[4.3.1]decan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BJE _cell.length_a 52.951 _cell.length_b 52.951 _cell.length_c 73.146 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H25 Cl2 N3 O4 S' _chem_comp.formula_weight 498.423 _chem_comp.id WRL _chem_comp.mon_nstd_flag . _chem_comp.name (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-[(1~{S})-1-pyridin-2-ylethyl]-3,10-diazabicyclo[4.3.1]decan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C1 WRL sing 376 n n C1 C22 WRL doub 377 n y C1 C2 WRL sing 378 n y C22 C21 WRL sing 379 n y C2 C3 WRL doub 380 n y C21 CL2 WRL sing 381 n n C21 C20 WRL doub 382 n y O4 S1 WRL doub 383 n n C3 C20 WRL sing 384 n y C3 S1 WRL sing 385 n n S1 O1 WRL doub 386 n n S1 N1 WRL sing 387 n n C17 C16 WRL doub 388 n y C17 C18 WRL sing 389 n y C16 C15 WRL sing 390 n y C18 C14 WRL doub 391 n y N1 C4 WRL sing 392 n n N1 C8 WRL sing 393 n n C4 C19 WRL sing 394 n n C4 C5 WRL sing 395 n n C15 N3 WRL doub 396 n y C14 N3 WRL sing 397 n y C14 C12 WRL sing 398 n n C19 O3 WRL doub 399 n n C19 N2 WRL sing 400 n n C11 N2 WRL sing 401 n n C11 C9 WRL sing 402 n n N2 C12 WRL sing 403 n n C8 C9 WRL sing 404 n n C8 C7 WRL sing 405 n n C5 C6 WRL sing 406 n n C12 C13 WRL sing 407 n n C9 C10 WRL sing 408 n n C7 C6 WRL sing 409 n n C10 O2 WRL sing 410 n n C4 H2 WRL sing 411 n n C5 H3 WRL sing 412 n n C5 H4 WRL sing 413 n n C6 H5 WRL sing 414 n n C6 H6 WRL sing 415 n n C7 H7 WRL sing 416 n n C7 H8 WRL sing 417 n n C8 H9 WRL sing 418 n n C10 H12 WRL sing 419 n n C10 H11 WRL sing 420 n n C13 H18 WRL sing 421 n n C13 H17 WRL sing 422 n n C13 H19 WRL sing 423 n n C15 H20 WRL sing 424 n n C17 H22 WRL sing 425 n n C20 H24 WRL sing 426 n n C22 H25 WRL sing 427 n n C11 H15 WRL sing 428 n n C11 H14 WRL sing 429 n n C12 H16 WRL sing 430 n n C16 H21 WRL sing 431 n n C18 H23 WRL sing 432 n n C2 H1 WRL sing 433 n n C9 H10 WRL sing 434 n n O2 H13 WRL sing 435 n n # _atom_sites.entry_id 8BJE _atom_sites.fract_transf_matrix[1][1] 0.018885 _atom_sites.fract_transf_matrix[1][2] 0.010903 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 202 GOL GOL . C 2 GOL A 1 202 203 GOL GOL . D 3 WRL A 1 203 208 WRL LIG . E 4 HOH A 1 301 5 HOH HOH . E 4 HOH A 2 302 54 HOH HOH . E 4 HOH A 3 303 39 HOH HOH . E 4 HOH A 4 304 15 HOH HOH . E 4 HOH A 5 305 8 HOH HOH . E 4 HOH A 6 306 31 HOH HOH . E 4 HOH A 7 307 27 HOH HOH . E 4 HOH A 8 308 6 HOH HOH . E 4 HOH A 9 309 11 HOH HOH . E 4 HOH A 10 310 13 HOH HOH . E 4 HOH A 11 311 33 HOH HOH . E 4 HOH A 12 312 24 HOH HOH . E 4 HOH A 13 313 35 HOH HOH . E 4 HOH A 14 314 26 HOH HOH . E 4 HOH A 15 315 30 HOH HOH . E 4 HOH A 16 316 21 HOH HOH . E 4 HOH A 17 317 23 HOH HOH . E 4 HOH A 18 318 20 HOH HOH . E 4 HOH A 19 319 1 HOH HOH . E 4 HOH A 20 320 2 HOH HOH . E 4 HOH A 21 321 41 HOH HOH . E 4 HOH A 22 322 53 HOH HOH . E 4 HOH A 23 323 37 HOH HOH . E 4 HOH A 24 324 18 HOH HOH . E 4 HOH A 25 325 62 HOH HOH . E 4 HOH A 26 326 22 HOH HOH . E 4 HOH A 27 327 14 HOH HOH . E 4 HOH A 28 328 34 HOH HOH . E 4 HOH A 29 329 4 HOH HOH . E 4 HOH A 30 330 52 HOH HOH . E 4 HOH A 31 331 7 HOH HOH . E 4 HOH A 32 332 58 HOH HOH . E 4 HOH A 33 333 3 HOH HOH . E 4 HOH A 34 334 55 HOH HOH . E 4 HOH A 35 335 36 HOH HOH . E 4 HOH A 36 336 38 HOH HOH . E 4 HOH A 37 337 9 HOH HOH . E 4 HOH A 38 338 10 HOH HOH . E 4 HOH A 39 339 12 HOH HOH . E 4 HOH A 40 340 48 HOH HOH . E 4 HOH A 41 341 16 HOH HOH . E 4 HOH A 42 342 19 HOH HOH . E 4 HOH A 43 343 56 HOH HOH . E 4 HOH A 44 344 61 HOH HOH . E 4 HOH A 45 345 43 HOH HOH . E 4 HOH A 46 346 50 HOH HOH . E 4 HOH A 47 347 46 HOH HOH . E 4 HOH A 48 348 49 HOH HOH . E 4 HOH A 49 349 51 HOH HOH . E 4 HOH A 50 350 57 HOH HOH . E 4 HOH A 51 351 29 HOH HOH . E 4 HOH A 52 352 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 WRL . . . D 3 6.217 20.22 -3.749 1 22.25 ? N1 WRL 203 A 1 HETATM 2 N N3 WRL . . . D 3 8.643 21.135 0.576 1 21.1 ? N3 WRL 203 A 1 HETATM 3 C C4 WRL . . . D 3 5.245 20.411 -2.667 1 21.53 ? C4 WRL 203 A 1 HETATM 4 C C5 WRL . . . D 3 3.941 19.748 -3.093 1 21.36 ? C5 WRL 203 A 1 HETATM 5 C C6 WRL . . . D 3 4.17 18.274 -3.415 1 21.76 ? C6 WRL 203 A 1 HETATM 6 C C7 WRL . . . D 3 5.23 18.134 -4.492 1 22.21 ? C7 WRL 203 A 1 HETATM 7 C C8 WRL . . . D 3 6.54 18.818 -4.103 1 23.36 ? C8 WRL 203 A 1 HETATM 8 C C10 WRL . . . D 3 8.46 17.26 -3.524 1 27.58 ? C10 WRL 203 A 1 HETATM 9 C C13 WRL . . . D 3 7.046 17.775 0.832 1 21.66 ? C13 WRL 203 A 1 HETATM 10 C C15 WRL . . . D 3 9.814 21.702 0.891 1 21.54 ? C15 WRL 203 A 1 HETATM 11 C C17 WRL . . . D 3 10.669 19.7 1.774 1 21.52 ? C17 WRL 203 A 1 HETATM 12 C C20 WRL . . . D 3 8.863 22.626 -3.303 1 25.02 ? C20 WRL 203 A 1 HETATM 13 C C21 WRL . . . D 3 10.206 22.817 -3.052 1 26.68 ? C21 WRL 203 A 1 HETATM 14 C C22 WRL . . . D 3 11.184 22.121 -3.735 1 26.59 ? C22 WRL 203 A 1 HETATM 15 C C1 WRL . . . D 3 10.77 21.21 -4.687 1 26.91 ? C1 WRL 203 A 1 HETATM 16 C C11 WRL . . . D 3 7.833 19.123 -1.95 1 22.43 ? C11 WRL 203 A 1 HETATM 17 C C12 WRL . . . D 3 7.132 19.254 0.471 1 21.41 ? C12 WRL 203 A 1 HETATM 18 C C14 WRL . . . D 3 8.478 19.838 0.855 1 21.73 ? C14 WRL 203 A 1 HETATM 19 C C16 WRL . . . D 3 10.841 21.028 1.486 1 21.17 ? C16 WRL 203 A 1 HETATM 20 C C18 WRL . . . D 3 9.474 19.092 1.452 1 21.66 ? C18 WRL 203 A 1 HETATM 21 C C19 WRL . . . D 3 5.588 19.996 -1.24 1 21.55 ? C19 WRL 203 A 1 HETATM 22 C C2 WRL . . . D 3 9.436 21 -4.969 1 25.15 ? C2 WRL 203 A 1 HETATM 23 C C3 WRL . . . D 3 8.485 21.707 -4.261 1 24.24 ? C3 WRL 203 A 1 HETATM 24 C C9 WRL . . . D 3 7.326 18.106 -2.985 1 24.2 ? C9 WRL 203 A 1 HETATM 25 N N2 WRL . . . D 3 6.807 19.479 -0.957 1 21.65 ? N2 WRL 203 A 1 HETATM 26 O O1 WRL . . . D 3 6.686 21.098 -5.983 1 24.51 ? O1 WRL 203 A 1 HETATM 27 O O2 WRL . . . D 3 8.915 16.373 -2.51 1 30.48 ? O2 WRL 203 A 1 HETATM 28 O O3 WRL . . . D 3 4.749 20.148 -0.366 1 21.66 ? O3 WRL 203 A 1 HETATM 29 O O4 WRL . . . D 3 6.085 22.625 -4.154 1 23.17 ? O4 WRL 203 A 1 HETATM 30 S S1 WRL . . . D 3 6.773 21.464 -4.613 1 23.62 ? S1 WRL 203 A 1 HETATM 31 CL CL1 WRL . . . D 3 11.967 20.298 -5.559 1 28.85 ? CL1 WRL 203 A 1 HETATM 32 CL CL2 WRL . . . D 3 10.679 23.973 -1.845 1 28.65 ? CL2 WRL 203 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #