data_8BJF # _model_server_result.job_id jYBTywcX-WJsgnAANfTtxQ _model_server_result.datetime_utc '2024-12-05 03:44:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1404}' # _entry.id 8BJF # _exptl.entry_id 8BJF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BJF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 451 n n CBA CAB Y01 sing 452 n n CBA CAN Y01 sing 453 n n CAN CAJ Y01 sing 454 n n CAJ CAO Y01 sing 455 n n CAO CBB Y01 sing 456 n n CBB CAC Y01 sing 457 n n CBB CBE Y01 sing 458 n n CBE CAP Y01 sing 459 n n CBE CBI Y01 sing 460 n n CAP CAQ Y01 sing 461 n n CAQ CBG Y01 sing 462 n n CBG CBI Y01 sing 463 n n CBG CBD Y01 sing 464 n n CBI CAE Y01 sing 465 n n CBI CAU Y01 sing 466 n n CAU CAS Y01 sing 467 n n CAS CBF Y01 sing 468 n n CBF CBD Y01 sing 469 n n CBF CBH Y01 sing 470 n n CBD CAK Y01 sing 471 n n CAK CAI Y01 sing 472 n n CAI CAZ Y01 doub 473 n n CAZ CAV Y01 sing 474 n n CAZ CBH Y01 sing 475 n n CAV CBC Y01 sing 476 n n CBH CAD Y01 sing 477 n n CBH CAT Y01 sing 478 n n CAT CAR Y01 sing 479 n n CAR CBC Y01 sing 480 n n CBC OAW Y01 sing 481 n n OAW CAY Y01 sing 482 n n CAY OAG Y01 doub 483 n n CAY CAM Y01 sing 484 n n CAM CAL Y01 sing 485 n n CAL CAX Y01 sing 486 n n CAX OAH Y01 sing 487 n n CAX OAF Y01 doub 488 n n CAA HAA1 Y01 sing 489 n n CAA HAA2 Y01 sing 490 n n CAA HAA3 Y01 sing 491 n n CBA HBA Y01 sing 492 n n CAB HAB1 Y01 sing 493 n n CAB HAB2 Y01 sing 494 n n CAB HAB3 Y01 sing 495 n n CAN HAN1 Y01 sing 496 n n CAN HAN2 Y01 sing 497 n n CAJ HAJ1 Y01 sing 498 n n CAJ HAJ2 Y01 sing 499 n n CAO HAO1 Y01 sing 500 n n CAO HAO2 Y01 sing 501 n n CBB HBB Y01 sing 502 n n CAC HAC1 Y01 sing 503 n n CAC HAC2 Y01 sing 504 n n CAC HAC3 Y01 sing 505 n n CBE HBE Y01 sing 506 n n CAP HAP1 Y01 sing 507 n n CAP HAP2 Y01 sing 508 n n CAQ HAQ1 Y01 sing 509 n n CAQ HAQ2 Y01 sing 510 n n CBG HBG Y01 sing 511 n n CBD HBD Y01 sing 512 n n CAE HAE1 Y01 sing 513 n n CAE HAE2 Y01 sing 514 n n CAE HAE3 Y01 sing 515 n n CAU HAU1 Y01 sing 516 n n CAU HAU2 Y01 sing 517 n n CAS HAS1 Y01 sing 518 n n CAS HAS2 Y01 sing 519 n n CBF HBF Y01 sing 520 n n CAK HAK1 Y01 sing 521 n n CAK HAK2 Y01 sing 522 n n CAI HAI Y01 sing 523 n n CAV HAV1 Y01 sing 524 n n CAV HAV2 Y01 sing 525 n n CBC HBC Y01 sing 526 n n CAD HAD1 Y01 sing 527 n n CAD HAD2 Y01 sing 528 n n CAD HAD3 Y01 sing 529 n n CAT HAT1 Y01 sing 530 n n CAT HAT2 Y01 sing 531 n n CAR HAR1 Y01 sing 532 n n CAR HAR2 Y01 sing 533 n n CAM HAM1 Y01 sing 534 n n CAM HAM2 Y01 sing 535 n n CAL HAL1 Y01 sing 536 n n CAL HAL2 Y01 sing 537 n n OAH HAH Y01 sing 538 n n # _atom_sites.entry_id 8BJF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLR A 1 1401 1301 CLR CLR . C 3 Y01 A 1 1402 1302 Y01 Y01 . D 3 Y01 A 1 1403 1304 Y01 Y01 . E 3 Y01 A 1 1404 1305 Y01 Y01 . F 2 CLR A 1 1405 1306 CLR CLR . G 3 Y01 A 1 1406 1307 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 3 159.28 136.914 134.101 1 57.12 ? CAA Y01 1404 A 1 HETATM 2 C CBA Y01 . . . E 3 158.766 136.894 132.675 1 58.18 ? CBA Y01 1404 A 1 HETATM 3 C CAB Y01 . . . E 3 157.242 136.813 132.649 1 48.3 ? CAB Y01 1404 A 1 HETATM 4 C CAN Y01 . . . E 3 159.406 135.796 131.781 1 61.98 ? CAN Y01 1404 A 1 HETATM 5 C CAJ Y01 . . . E 3 160.442 136.273 130.728 1 56.35 ? CAJ Y01 1404 A 1 HETATM 6 C CAO Y01 . . . E 3 160.043 136.02 129.253 1 48.55 ? CAO Y01 1404 A 1 HETATM 7 C CBB Y01 . . . E 3 158.573 136.368 128.911 1 50.82 ? CBB Y01 1404 A 1 HETATM 8 C CAC Y01 . . . E 3 158.238 137.791 129.293 1 53.72 ? CAC Y01 1404 A 1 HETATM 9 C CBE Y01 . . . E 3 158.282 136.031 127.403 1 55.12 ? CBE Y01 1404 A 1 HETATM 10 C CAP Y01 . . . E 3 156.831 136.471 127.103 1 56.72 ? CAP Y01 1404 A 1 HETATM 11 C CAQ Y01 . . . E 3 156.764 136.777 125.603 1 56.72 ? CAQ Y01 1404 A 1 HETATM 12 C CBG Y01 . . . E 3 158.08 136.222 125.095 1 56.72 ? CBG Y01 1404 A 1 HETATM 13 C CBI Y01 . . . E 3 159.063 136.648 126.163 1 50.06 ? CBI Y01 1404 A 1 HETATM 14 C CAE Y01 . . . E 3 159.239 138.167 126.125 1 51.65 ? CAE Y01 1404 A 1 HETATM 15 C CAU Y01 . . . E 3 160.378 135.957 125.8 1 54.81 ? CAU Y01 1404 A 1 HETATM 16 C CAS Y01 . . . E 3 160.834 136.207 124.345 1 53.77 ? CAS Y01 1404 A 1 HETATM 17 C CBF Y01 . . . E 3 159.757 135.941 123.271 1 49.74 ? CBF Y01 1404 A 1 HETATM 18 C CBD Y01 . . . E 3 158.491 136.651 123.7 1 47.23 ? CBD Y01 1404 A 1 HETATM 19 C CAK Y01 . . . E 3 157.366 136.314 122.754 1 52.99 ? CAK Y01 1404 A 1 HETATM 20 C CAI Y01 . . . E 3 157.716 136.342 121.395 1 51.75 ? CAI Y01 1404 A 1 HETATM 21 C CAZ Y01 . . . E 3 159.007 136.382 120.905 1 47.33 ? CAZ Y01 1404 A 1 HETATM 22 C CAV Y01 . . . E 3 159.076 136.418 119.447 1 45.91 ? CAV Y01 1404 A 1 HETATM 23 C CBH Y01 . . . E 3 160.16 136.356 121.827 1 48.2 ? CBH Y01 1404 A 1 HETATM 24 C CAD Y01 . . . E 3 160.842 137.705 121.781 1 52.48 ? CAD Y01 1404 A 1 HETATM 25 C CAT Y01 . . . E 3 161.136 135.311 121.244 1 56.78 ? CAT Y01 1404 A 1 HETATM 26 C CAR Y01 . . . E 3 161.363 135.415 119.728 1 54.12 ? CAR Y01 1404 A 1 HETATM 27 C CBC Y01 . . . E 3 160.041 135.359 118.968 1 50.54 ? CBC Y01 1404 A 1 HETATM 28 O OAW Y01 . . . E 3 160.164 135.648 117.583 1 57.12 ? OAW Y01 1404 A 1 HETATM 29 C CAY Y01 . . . E 3 159.284 135.032 116.739 1 58.76 ? CAY Y01 1404 A 1 HETATM 30 O OAG Y01 . . . E 3 159.244 135.605 115.627 1 62.67 ? OAG Y01 1404 A 1 HETATM 31 C CAM Y01 . . . E 3 158.498 133.843 117.118 1 57.81 ? CAM Y01 1404 A 1 HETATM 32 C CAL Y01 . . . E 3 157.764 133.205 115.955 1 61.57 ? CAL Y01 1404 A 1 HETATM 33 C CAX Y01 . . . E 3 157.058 131.902 116.395 1 64.31 ? CAX Y01 1404 A 1 HETATM 34 O OAH Y01 . . . E 3 155.806 131.928 116.452 1 58.82 ? OAH Y01 1404 A 1 HETATM 35 O OAF Y01 . . . E 3 157.803 130.934 116.658 1 65.95 ? OAF Y01 1404 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #