data_8BJT # _model_server_result.job_id EmVbNQD0ur0P2Kk5TJaw0A _model_server_result.datetime_utc '2025-08-02 08:41:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8BJT # _exptl.entry_id 8BJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.595 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8BJT _cell.length_a 66.932 _cell.length_b 66.932 _cell.length_c 154.963 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 57 A HIS 93 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 176 A CYS 212 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A SG CYS 219 A CYS 255 1_555 D ZN ZN . A ZN 403 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? # _chem_comp.formula 'C27 H32 N8 O2' _chem_comp.formula_weight 500.595 _chem_comp.id 8X7 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 8X7 sing 1 n n N02 C03 8X7 sing 2 n n N02 C07 8X7 sing 3 n n C03 C04 8X7 sing 4 n n C07 C06 8X7 sing 5 n n C04 N05 8X7 sing 6 n n C06 N05 8X7 sing 7 n n N05 C08 8X7 sing 8 n n C08 C37 8X7 doub 9 n y C08 C09 8X7 sing 10 n y C37 C36 8X7 sing 11 n y C09 C10 8X7 doub 12 n y C36 C11 8X7 doub 13 n y C10 C11 8X7 sing 14 n y C11 N12 8X7 sing 15 n n N12 C13 8X7 sing 16 n n C30 C29 8X7 doub 17 n y C30 C31 8X7 sing 18 n y C29 C28 8X7 sing 19 n y C33 C32 8X7 sing 20 n n C13 N25 8X7 doub 21 n y C13 N14 8X7 sing 22 n y C31 C26 8X7 doub 23 n y N25 C24 8X7 sing 24 n y C28 C32 8X7 sing 25 n n C28 N27 8X7 doub 26 n y O35 C32 8X7 sing 27 n n C32 C34 8X7 sing 28 n n N14 C15 8X7 doub 29 n y C26 N27 8X7 sing 30 n y C26 N23 8X7 sing 31 n n C24 N23 8X7 sing 32 n n C24 C16 8X7 doub 33 n y N23 N19 8X7 sing 34 n n C15 C16 8X7 sing 35 n y C16 C17 8X7 sing 36 n n N19 C17 8X7 sing 37 n n N19 C20 8X7 sing 38 n n C17 O18 8X7 doub 39 n n C20 C21 8X7 sing 40 n n C21 C22 8X7 doub 41 n n C01 H011 8X7 sing 42 n n C01 H013 8X7 sing 43 n n C01 H012 8X7 sing 44 n n C03 H031 8X7 sing 45 n n C03 H032 8X7 sing 46 n n C04 H041 8X7 sing 47 n n C04 H042 8X7 sing 48 n n C06 H061 8X7 sing 49 n n C06 H062 8X7 sing 50 n n C07 H072 8X7 sing 51 n n C07 H071 8X7 sing 52 n n C09 H091 8X7 sing 53 n n C10 H101 8X7 sing 54 n n N12 H121 8X7 sing 55 n n C15 H151 8X7 sing 56 n n C20 H202 8X7 sing 57 n n C20 H201 8X7 sing 58 n n C21 H211 8X7 sing 59 n n C22 H221 8X7 sing 60 n n C22 H222 8X7 sing 61 n n C29 H291 8X7 sing 62 n n C30 H301 8X7 sing 63 n n C31 H311 8X7 sing 64 n n C33 H331 8X7 sing 65 n n C33 H333 8X7 sing 66 n n C33 H332 8X7 sing 67 n n C34 H342 8X7 sing 68 n n C34 H341 8X7 sing 69 n n C34 H343 8X7 sing 70 n n O35 H351 8X7 sing 71 n n C36 H361 8X7 sing 72 n n C37 H371 8X7 sing 73 n n # _atom_sites.entry_id 8BJT _atom_sites.fract_transf_matrix[1][1] 0.014941 _atom_sites.fract_transf_matrix[1][2] 0.008626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 401 ACT ACT . C 3 8X7 A 1 402 1 8X7 INX . D 4 ZN A 1 403 1 ZN ZN . E 5 HOH A 1 501 5 HOH HOH . E 5 HOH A 2 502 8 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 7 HOH HOH . E 5 HOH A 5 505 9 HOH HOH . E 5 HOH A 6 506 2 HOH HOH . E 5 HOH A 7 507 19 HOH HOH . E 5 HOH A 8 508 1 HOH HOH . E 5 HOH A 9 509 13 HOH HOH . E 5 HOH A 10 510 11 HOH HOH . E 5 HOH A 11 511 17 HOH HOH . E 5 HOH A 12 512 18 HOH HOH . E 5 HOH A 13 513 21 HOH HOH . E 5 HOH A 14 514 20 HOH HOH . E 5 HOH A 15 515 12 HOH HOH . E 5 HOH A 16 516 4 HOH HOH . E 5 HOH A 17 517 6 HOH HOH . E 5 HOH A 18 518 16 HOH HOH . E 5 HOH A 19 519 15 HOH HOH . E 5 HOH A 20 520 22 HOH HOH . E 5 HOH A 21 521 14 HOH HOH . E 5 HOH A 22 522 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 8X7 . . . C 3 -29.114 40.853 -7.629 1 54.64 ? C01 8X7 402 A 1 HETATM 2 N N02 8X7 . . . C 3 -29.658 39.664 -6.943 1 54.55 ? N02 8X7 402 A 1 HETATM 3 C C03 8X7 . . . C 3 -28.903 38.424 -7.293 1 54.1 ? C03 8X7 402 A 1 HETATM 4 C C04 8X7 . . . C 3 -29.532 37.165 -6.654 1 53.37 ? C04 8X7 402 A 1 HETATM 5 N N05 8X7 . . . C 3 -31.004 37.186 -6.87 1 52.42 ? N05 8X7 402 A 1 HETATM 6 C C06 8X7 . . . C 3 -31.705 38.39 -6.347 1 53.27 ? C06 8X7 402 A 1 HETATM 7 C C07 8X7 . . . C 3 -31.137 39.6 -7.11 1 54.11 ? C07 8X7 402 A 1 HETATM 8 C C08 8X7 . . . C 3 -31.698 35.947 -6.88 1 50.16 ? C08 8X7 402 A 1 HETATM 9 C C09 8X7 . . . C 3 -31.149 34.846 -7.554 1 48.95 ? C09 8X7 402 A 1 HETATM 10 C C10 8X7 . . . C 3 -31.832 33.637 -7.595 1 47.84 ? C10 8X7 402 A 1 HETATM 11 C C11 8X7 . . . C 3 -33.103 33.53 -7.015 1 46.84 ? C11 8X7 402 A 1 HETATM 12 N N12 8X7 . . . C 3 -33.843 32.331 -6.994 1 44.82 ? N12 8X7 402 A 1 HETATM 13 C C13 8X7 . . . C 3 -33.942 31.401 -8.009 1 42.79 ? C13 8X7 402 A 1 HETATM 14 N N14 8X7 . . . C 3 -34.733 30.338 -7.831 1 41.77 ? N14 8X7 402 A 1 HETATM 15 C C15 8X7 . . . C 3 -34.845 29.389 -8.757 1 41.18 ? C15 8X7 402 A 1 HETATM 16 C C16 8X7 . . . C 3 -34.106 29.53 -9.944 1 40.89 ? C16 8X7 402 A 1 HETATM 17 C C17 8X7 . . . C 3 -34.01 28.784 -11.215 1 40.02 ? C17 8X7 402 A 1 HETATM 18 O O18 8X7 . . . C 3 -34.568 27.743 -11.512 1 39.46 ? O18 8X7 402 A 1 HETATM 19 N N19 8X7 . . . C 3 -33.208 29.505 -12.029 1 39.91 ? N19 8X7 402 A 1 HETATM 20 C C20 8X7 . . . C 3 -32.906 29.13 -13.412 1 39.68 ? C20 8X7 402 A 1 HETATM 21 C C21 8X7 . . . C 3 -33.691 30.035 -14.332 1 39.53 ? C21 8X7 402 A 1 HETATM 22 C C22 8X7 . . . C 3 -34.943 30.355 -14.088 1 39.41 ? C22 8X7 402 A 1 HETATM 23 N N23 8X7 . . . C 3 -32.735 30.647 -11.363 1 39.96 ? N23 8X7 402 A 1 HETATM 24 C C24 8X7 . . . C 3 -33.327 30.711 -10.124 1 41.06 ? C24 8X7 402 A 1 HETATM 25 N N25 8X7 . . . C 3 -33.252 31.588 -9.126 1 42.04 ? N25 8X7 402 A 1 HETATM 26 C C26 8X7 . . . C 3 -31.776 31.552 -11.817 1 39.11 ? C26 8X7 402 A 1 HETATM 27 N N27 8X7 . . . C 3 -30.687 31.103 -12.436 1 38.86 ? N27 8X7 402 A 1 HETATM 28 C C28 8X7 . . . C 3 -29.716 31.909 -12.855 1 38.68 ? C28 8X7 402 A 1 HETATM 29 C C29 8X7 . . . C 3 -29.851 33.285 -12.669 1 38.62 ? C29 8X7 402 A 1 HETATM 30 C C30 8X7 . . . C 3 -30.964 33.804 -12.007 1 38.57 ? C30 8X7 402 A 1 HETATM 31 C C31 8X7 . . . C 3 -31.937 32.917 -11.575 1 38.73 ? C31 8X7 402 A 1 HETATM 32 C C32 8X7 . . . C 3 -28.499 31.34 -13.584 1 38.45 ? C32 8X7 402 A 1 HETATM 33 C C33 8X7 . . . C 3 -27.224 32.17 -13.381 1 38.37 ? C33 8X7 402 A 1 HETATM 34 C C34 8X7 . . . C 3 -28.2 29.887 -13.18 1 38.24 ? C34 8X7 402 A 1 HETATM 35 O O35 8X7 . . . C 3 -28.777 31.381 -14.974 1 38.72 ? O35 8X7 402 A 1 HETATM 36 C C36 8X7 . . . C 3 -33.643 34.616 -6.327 1 47.9 ? C36 8X7 402 A 1 HETATM 37 C C37 8X7 . . . C 3 -32.955 35.817 -6.272 1 49 ? C37 8X7 402 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #