data_8BJX # _model_server_result.job_id LWY_dBchQVVj9kDe0_aGMA _model_server_result.datetime_utc '2024-10-16 23:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8BJX # _exptl.entry_id 8BJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.482 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3~{R})-1-(6-nitropyridin-2-yl)pyrrolidin-3-yl]-3-(4-sulfamoylphenyl)thiourea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.335 _cell.angle_gamma 90 _cell.entry_id 8BJX _cell.length_a 42.32 _cell.length_b 41.17 _cell.length_c 71.67 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 AAA HIS 94 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc2 A NE2 HIS 96 AAA HIS 96 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc3 A ND1 HIS 119 AAA HIS 119 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 B ZN ZN . AAA ZN 301 1_555 C N1 QKO . AAA QKO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C16 H18 N6 O4 S2' _chem_comp.formula_weight 422.482 _chem_comp.id QKO _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3~{R})-1-(6-nitropyridin-2-yl)pyrrolidin-3-yl]-3-(4-sulfamoylphenyl)thiourea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (R)-4-(3-(1-(6-nitropyridin-2-yl)pyrrolidin-3-yl)thioureido)benzenesulfonamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C QKO doub 299 n n N2 C QKO sing 300 n n N2 C7 QKO sing 301 n n C8 C7 QKO sing 302 n n C8 N3 QKO sing 303 n n C N QKO sing 304 n n C7 C9 QKO sing 305 n n N C1 QKO sing 306 n n N3 C11 QKO sing 307 n n N3 C10 QKO sing 308 n n C11 N5 QKO doub 309 n y C11 C12 QKO sing 310 n y C9 C10 QKO sing 311 n n O3 N4 QKO sing 312 n n N5 C15 QKO sing 313 n y C1 C6 QKO doub 314 n y C1 C2 QKO sing 315 n y C12 C13 QKO doub 316 n y C6 C5 QKO sing 317 n y C2 C3 QKO doub 318 n y C15 N4 QKO sing 319 n n C15 C14 QKO doub 320 n y C13 C14 QKO sing 321 n y N4 O2 QKO doub 322 n n C5 C4 QKO doub 323 n y C3 C4 QKO sing 324 n y C4 S1 QKO sing 325 n n N1 S1 QKO sing 326 n n O S1 QKO doub 327 n n S1 O1 QKO doub 328 n n C8 H1 QKO sing 329 n n C8 H2 QKO sing 330 n n C5 H3 QKO sing 331 n n C6 H4 QKO sing 332 n n N1 H5 QKO sing 333 n n N1 H6 QKO sing 334 n n C2 H7 QKO sing 335 n n C14 H8 QKO sing 336 n n C13 H9 QKO sing 337 n n C12 H10 QKO sing 338 n n C10 H11 QKO sing 339 n n C10 H12 QKO sing 340 n n C9 H13 QKO sing 341 n n C9 H14 QKO sing 342 n n C7 H15 QKO sing 343 n n N2 H16 QKO sing 344 n n N H17 QKO sing 345 n n C3 H18 QKO sing 346 n n # _atom_sites.entry_id 8BJX _atom_sites.fract_transf_matrix[1][1] 0.023629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN AAA 1 301 1 ZN ZN . C 3 QKO AAA 1 302 303 QKO A39 . D 4 GOL AAA 1 303 301 GOL GOL . E 5 DMS AAA 1 304 302 DMS DMS . F 6 HOH AAA 1 401 105 HOH HOH . F 6 HOH AAA 2 402 175 HOH HOH . F 6 HOH AAA 3 403 158 HOH HOH . F 6 HOH AAA 4 404 150 HOH HOH . F 6 HOH AAA 5 405 90 HOH HOH . F 6 HOH AAA 6 406 173 HOH HOH . F 6 HOH AAA 7 407 125 HOH HOH . F 6 HOH AAA 8 408 30 HOH HOH . F 6 HOH AAA 9 409 164 HOH HOH . F 6 HOH AAA 10 410 66 HOH HOH . F 6 HOH AAA 11 411 17 HOH HOH . F 6 HOH AAA 12 412 64 HOH HOH . F 6 HOH AAA 13 413 74 HOH HOH . F 6 HOH AAA 14 414 159 HOH HOH . F 6 HOH AAA 15 415 172 HOH HOH . F 6 HOH AAA 16 416 123 HOH HOH . F 6 HOH AAA 17 417 50 HOH HOH . F 6 HOH AAA 18 418 39 HOH HOH . F 6 HOH AAA 19 419 87 HOH HOH . F 6 HOH AAA 20 420 138 HOH HOH . F 6 HOH AAA 21 421 59 HOH HOH . F 6 HOH AAA 22 422 156 HOH HOH . F 6 HOH AAA 23 423 106 HOH HOH . F 6 HOH AAA 24 424 165 HOH HOH . F 6 HOH AAA 25 425 25 HOH HOH . F 6 HOH AAA 26 426 53 HOH HOH . F 6 HOH AAA 27 427 151 HOH HOH . F 6 HOH AAA 28 428 7 HOH HOH . F 6 HOH AAA 29 429 28 HOH HOH . F 6 HOH AAA 30 430 47 HOH HOH . F 6 HOH AAA 31 431 13 HOH HOH . F 6 HOH AAA 32 432 42 HOH HOH . F 6 HOH AAA 33 433 114 HOH HOH . F 6 HOH AAA 34 434 163 HOH HOH . F 6 HOH AAA 35 435 144 HOH HOH . F 6 HOH AAA 36 436 54 HOH HOH . F 6 HOH AAA 37 437 5 HOH HOH . F 6 HOH AAA 38 438 31 HOH HOH . F 6 HOH AAA 39 439 10 HOH HOH . F 6 HOH AAA 40 440 79 HOH HOH . F 6 HOH AAA 41 441 35 HOH HOH . F 6 HOH AAA 42 442 121 HOH HOH . F 6 HOH AAA 43 443 100 HOH HOH . F 6 HOH AAA 44 444 18 HOH HOH . F 6 HOH AAA 45 445 15 HOH HOH . F 6 HOH AAA 46 446 16 HOH HOH . F 6 HOH AAA 47 447 153 HOH HOH . F 6 HOH AAA 48 448 2 HOH HOH . F 6 HOH AAA 49 449 99 HOH HOH . F 6 HOH AAA 50 450 44 HOH HOH . F 6 HOH AAA 51 451 12 HOH HOH . F 6 HOH AAA 52 452 46 HOH HOH . F 6 HOH AAA 53 453 8 HOH HOH . F 6 HOH AAA 54 454 67 HOH HOH . F 6 HOH AAA 55 455 51 HOH HOH . F 6 HOH AAA 56 456 77 HOH HOH . F 6 HOH AAA 57 457 37 HOH HOH . F 6 HOH AAA 58 458 55 HOH HOH . F 6 HOH AAA 59 459 168 HOH HOH . F 6 HOH AAA 60 460 107 HOH HOH . F 6 HOH AAA 61 461 146 HOH HOH . F 6 HOH AAA 62 462 157 HOH HOH . F 6 HOH AAA 63 463 95 HOH HOH . F 6 HOH AAA 64 464 119 HOH HOH . F 6 HOH AAA 65 465 69 HOH HOH . F 6 HOH AAA 66 466 142 HOH HOH . F 6 HOH AAA 67 467 143 HOH HOH . F 6 HOH AAA 68 468 145 HOH HOH . F 6 HOH AAA 69 469 22 HOH HOH . F 6 HOH AAA 70 470 60 HOH HOH . F 6 HOH AAA 71 471 3 HOH HOH . F 6 HOH AAA 72 472 9 HOH HOH . F 6 HOH AAA 73 473 75 HOH HOH . F 6 HOH AAA 74 474 6 HOH HOH . F 6 HOH AAA 75 475 116 HOH HOH . F 6 HOH AAA 76 476 11 HOH HOH . F 6 HOH AAA 77 477 78 HOH HOH . F 6 HOH AAA 78 478 85 HOH HOH . F 6 HOH AAA 79 479 26 HOH HOH . F 6 HOH AAA 80 480 155 HOH HOH . F 6 HOH AAA 81 481 120 HOH HOH . F 6 HOH AAA 82 482 161 HOH HOH . F 6 HOH AAA 83 483 19 HOH HOH . F 6 HOH AAA 84 484 24 HOH HOH . F 6 HOH AAA 85 485 23 HOH HOH . F 6 HOH AAA 86 486 126 HOH HOH . F 6 HOH AAA 87 487 171 HOH HOH . F 6 HOH AAA 88 488 110 HOH HOH . F 6 HOH AAA 89 489 141 HOH HOH . F 6 HOH AAA 90 490 94 HOH HOH . F 6 HOH AAA 91 491 72 HOH HOH . F 6 HOH AAA 92 492 32 HOH HOH . F 6 HOH AAA 93 493 86 HOH HOH . F 6 HOH AAA 94 494 29 HOH HOH . F 6 HOH AAA 95 495 38 HOH HOH . F 6 HOH AAA 96 496 115 HOH HOH . F 6 HOH AAA 97 497 4 HOH HOH . F 6 HOH AAA 98 498 84 HOH HOH . F 6 HOH AAA 99 499 14 HOH HOH . F 6 HOH AAA 100 500 52 HOH HOH . F 6 HOH AAA 101 501 58 HOH HOH . F 6 HOH AAA 102 502 152 HOH HOH . F 6 HOH AAA 103 503 118 HOH HOH . F 6 HOH AAA 104 504 127 HOH HOH . F 6 HOH AAA 105 505 102 HOH HOH . F 6 HOH AAA 106 506 167 HOH HOH . F 6 HOH AAA 107 507 57 HOH HOH . F 6 HOH AAA 108 508 103 HOH HOH . F 6 HOH AAA 109 509 27 HOH HOH . F 6 HOH AAA 110 510 61 HOH HOH . F 6 HOH AAA 111 511 174 HOH HOH . F 6 HOH AAA 112 512 82 HOH HOH . F 6 HOH AAA 113 513 49 HOH HOH . F 6 HOH AAA 114 514 45 HOH HOH . F 6 HOH AAA 115 515 34 HOH HOH . F 6 HOH AAA 116 516 48 HOH HOH . F 6 HOH AAA 117 517 81 HOH HOH . F 6 HOH AAA 118 518 147 HOH HOH . F 6 HOH AAA 119 519 124 HOH HOH . F 6 HOH AAA 120 520 109 HOH HOH . F 6 HOH AAA 121 521 89 HOH HOH . F 6 HOH AAA 122 522 40 HOH HOH . F 6 HOH AAA 123 523 91 HOH HOH . F 6 HOH AAA 124 524 177 HOH HOH . F 6 HOH AAA 125 525 154 HOH HOH . F 6 HOH AAA 126 526 178 HOH HOH . F 6 HOH AAA 127 527 80 HOH HOH . F 6 HOH AAA 128 528 43 HOH HOH . F 6 HOH AAA 129 529 117 HOH HOH . F 6 HOH AAA 130 530 140 HOH HOH . F 6 HOH AAA 131 531 169 HOH HOH . F 6 HOH AAA 132 532 20 HOH HOH . F 6 HOH AAA 133 533 162 HOH HOH . F 6 HOH AAA 134 534 73 HOH HOH . F 6 HOH AAA 135 535 71 HOH HOH . F 6 HOH AAA 136 536 70 HOH HOH . F 6 HOH AAA 137 537 88 HOH HOH . F 6 HOH AAA 138 538 62 HOH HOH . F 6 HOH AAA 139 539 122 HOH HOH . F 6 HOH AAA 140 540 21 HOH HOH . F 6 HOH AAA 141 541 132 HOH HOH . F 6 HOH AAA 142 542 93 HOH HOH . F 6 HOH AAA 143 543 56 HOH HOH . F 6 HOH AAA 144 544 33 HOH HOH . F 6 HOH AAA 145 545 170 HOH HOH . F 6 HOH AAA 146 546 176 HOH HOH . F 6 HOH AAA 147 547 104 HOH HOH . F 6 HOH AAA 148 548 133 HOH HOH . F 6 HOH AAA 149 549 101 HOH HOH . F 6 HOH AAA 150 550 134 HOH HOH . F 6 HOH AAA 151 551 160 HOH HOH . F 6 HOH AAA 152 552 41 HOH HOH . F 6 HOH AAA 153 553 166 HOH HOH . F 6 HOH AAA 154 554 83 HOH HOH . F 6 HOH AAA 155 555 130 HOH HOH . F 6 HOH AAA 156 556 148 HOH HOH . F 6 HOH AAA 157 557 63 HOH HOH . F 6 HOH AAA 158 558 65 HOH HOH . F 6 HOH AAA 159 559 113 HOH HOH . F 6 HOH AAA 160 560 111 HOH HOH . F 6 HOH AAA 161 561 98 HOH HOH . F 6 HOH AAA 162 562 97 HOH HOH . F 6 HOH AAA 163 563 112 HOH HOH . F 6 HOH AAA 164 564 129 HOH HOH . F 6 HOH AAA 165 565 131 HOH HOH . F 6 HOH AAA 166 566 135 HOH HOH . F 6 HOH AAA 167 567 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 QKO . . . C 3 -1.729 9.099 12.65 1 49.05 ? C8 QKO 302 AAA 1 HETATM 2 C C5 QKO . . . C 3 -3.923 2.213 15.458 1 15.38 ? C5 QKO 302 AAA 1 HETATM 3 C C6 QKO . . . C 3 -3.434 3.286 14.733 1 18.17 ? C6 QKO 302 AAA 1 HETATM 4 N N1 QKO . . . C 3 -5.314 -0.454 16.115 1 12.77 ? N1 QKO 302 AAA 1 HETATM 5 C C2 QKO . . . C 3 -5.596 4.327 14.832 1 19.54 ? C2 QKO 302 AAA 1 HETATM 6 N N3 QKO . . . C 3 -0.916 9.355 13.858 1 52.04 ? N3 QKO 302 AAA 1 HETATM 7 C C4 QKO . . . C 3 -5.249 2.192 15.836 1 15.93 ? C4 QKO 302 AAA 1 HETATM 8 O O3 QKO . . . C 3 -0.42 14.511 14.218 1 77.67 ? O3 QKO 302 AAA 1 HETATM 9 N N4 QKO . . . C 3 -0.156 13.805 15.19 1 77.75 ? N4 QKO 302 AAA 1 HETATM 10 O O2 QKO . . . C 3 -0.364 14.149 16.349 1 45.07 ? O2 QKO 302 AAA 1 HETATM 11 C C15 QKO . . . C 3 0.4 12.423 14.935 1 80.48 ? C15 QKO 302 AAA 1 HETATM 12 C C14 QKO . . . C 3 1.688 12.123 15.349 1 80.22 ? C14 QKO 302 AAA 1 HETATM 13 C C13 QKO . . . C 3 2.159 10.851 15.072 1 70.09 ? C13 QKO 302 AAA 1 HETATM 14 C C12 QKO . . . C 3 1.351 9.924 14.436 1 50.11 ? C12 QKO 302 AAA 1 HETATM 15 N N5 QKO . . . C 3 -0.406 11.538 14.307 1 60.94 ? N5 QKO 302 AAA 1 HETATM 16 C C11 QKO . . . C 3 0.048 10.302 14.112 1 62.88 ? C11 QKO 302 AAA 1 HETATM 17 C C10 QKO . . . C 3 -1.343 8.448 14.912 1 46.75 ? C10 QKO 302 AAA 1 HETATM 18 C C9 QKO . . . C 3 -1.864 7.217 14.193 1 33.54 ? C9 QKO 302 AAA 1 HETATM 19 C C7 QKO . . . C 3 -2.12 7.589 12.757 1 36.99 ? C7 QKO 302 AAA 1 HETATM 20 N N2 QKO . . . C 3 -3.485 7.244 12.289 1 32.82 ? N2 QKO 302 AAA 1 HETATM 21 C C QKO . . . C 3 -4.25 6.213 12.741 1 40.66 ? C QKO 302 AAA 1 HETATM 22 S S QKO . . . C 3 -5.74 5.743 12.086 1 49.03 ? S QKO 302 AAA 1 HETATM 23 N N QKO . . . C 3 -3.734 5.471 13.73 1 27.06 ? N QKO 302 AAA 1 HETATM 24 C C1 QKO . . . C 3 -4.265 4.359 14.43 1 18.97 ? C1 QKO 302 AAA 1 HETATM 25 S S1 QKO . . . C 3 -5.873 0.824 16.765 1 13.02 ? S1 QKO 302 AAA 1 HETATM 26 O O1 QKO . . . C 3 -5.341 0.941 18.128 1 12.29 ? O1 QKO 302 AAA 1 HETATM 27 O O QKO . . . C 3 -7.293 0.888 16.693 1 11.89 ? O QKO 302 AAA 1 HETATM 28 C C3 QKO . . . C 3 -6.092 3.244 15.532 1 18.59 ? C3 QKO 302 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #