data_8BK0
#
_model_server_result.job_id            utvP-7re3UicN1ESzRuR3w 
_model_server_result.datetime_utc      '2024-12-27 12:03:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bk0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1005}' 
#
_entry.id    8BK0 
#
_exptl.entry_id    8BK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.94 
_cell.angle_gamma         90 
_cell.entry_id            8BK0 
_cell.length_a            32.715 
_cell.length_b            107.722 
_cell.length_c            40.647 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8BK0 
_atom_sites.fract_transf_matrix[1][1]    0.030567 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.01049 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009283 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 1001 1 EDO EDO . 
C 2 EDO A 1 1002 2 EDO EDO . 
D 2 EDO A 1 1003 3 EDO EDO . 
E 2 EDO A 1 1004 1003 EDO EDO . 
F 2 EDO A 1 1005 1005 EDO EDO . 
G 2 EDO A 1 1006 1006 EDO EDO . 
H 3 QJI A 1 1007 901 QJI XXX . 
I 2 EDO A 1 1008 1001 EDO EDO . 
J 2 EDO A 1 1009 1007 EDO EDO . 
K 4 HOH A 1 1101 113 HOH HOH . 
K 4 HOH A 2 1102 119 HOH HOH . 
K 4 HOH A 3 1103 92 HOH HOH . 
K 4 HOH A 4 1104 4 HOH HOH . 
K 4 HOH A 5 1105 67 HOH HOH . 
K 4 HOH A 6 1106 75 HOH HOH . 
K 4 HOH A 7 1107 94 HOH HOH . 
K 4 HOH A 8 1108 108 HOH HOH . 
K 4 HOH A 9 1109 25 HOH HOH . 
K 4 HOH A 10 1110 29 HOH HOH . 
K 4 HOH A 11 1111 23 HOH HOH . 
K 4 HOH A 12 1112 45 HOH HOH . 
K 4 HOH A 13 1113 55 HOH HOH . 
K 4 HOH A 14 1114 61 HOH HOH . 
K 4 HOH A 15 1115 51 HOH HOH . 
K 4 HOH A 16 1116 63 HOH HOH . 
K 4 HOH A 17 1117 107 HOH HOH . 
K 4 HOH A 18 1118 76 HOH HOH . 
K 4 HOH A 19 1119 41 HOH HOH . 
K 4 HOH A 20 1120 19 HOH HOH . 
K 4 HOH A 21 1121 44 HOH HOH . 
K 4 HOH A 22 1122 54 HOH HOH . 
K 4 HOH A 23 1123 68 HOH HOH . 
K 4 HOH A 24 1124 81 HOH HOH . 
K 4 HOH A 25 1125 40 HOH HOH . 
K 4 HOH A 26 1126 36 HOH HOH . 
K 4 HOH A 27 1127 15 HOH HOH . 
K 4 HOH A 28 1128 38 HOH HOH . 
K 4 HOH A 29 1129 56 HOH HOH . 
K 4 HOH A 30 1130 82 HOH HOH . 
K 4 HOH A 31 1131 105 HOH HOH . 
K 4 HOH A 32 1132 103 HOH HOH . 
K 4 HOH A 33 1133 30 HOH HOH . 
K 4 HOH A 34 1134 52 HOH HOH . 
K 4 HOH A 35 1135 43 HOH HOH . 
K 4 HOH A 36 1136 11 HOH HOH . 
K 4 HOH A 37 1137 33 HOH HOH . 
K 4 HOH A 38 1138 13 HOH HOH . 
K 4 HOH A 39 1139 57 HOH HOH . 
K 4 HOH A 40 1140 24 HOH HOH . 
K 4 HOH A 41 1141 89 HOH HOH . 
K 4 HOH A 42 1142 17 HOH HOH . 
K 4 HOH A 43 1143 48 HOH HOH . 
K 4 HOH A 44 1144 39 HOH HOH . 
K 4 HOH A 45 1145 21 HOH HOH . 
K 4 HOH A 46 1146 26 HOH HOH . 
K 4 HOH A 47 1147 8 HOH HOH . 
K 4 HOH A 48 1148 112 HOH HOH . 
K 4 HOH A 49 1149 117 HOH HOH . 
K 4 HOH A 50 1150 96 HOH HOH . 
K 4 HOH A 51 1151 64 HOH HOH . 
K 4 HOH A 52 1152 34 HOH HOH . 
K 4 HOH A 53 1153 9 HOH HOH . 
K 4 HOH A 54 1154 102 HOH HOH . 
K 4 HOH A 55 1155 46 HOH HOH . 
K 4 HOH A 56 1156 87 HOH HOH . 
K 4 HOH A 57 1157 74 HOH HOH . 
K 4 HOH A 58 1158 6 HOH HOH . 
K 4 HOH A 59 1159 59 HOH HOH . 
K 4 HOH A 60 1160 10 HOH HOH . 
K 4 HOH A 61 1161 53 HOH HOH . 
K 4 HOH A 62 1162 58 HOH HOH . 
K 4 HOH A 63 1163 95 HOH HOH . 
K 4 HOH A 64 1164 65 HOH HOH . 
K 4 HOH A 65 1165 47 HOH HOH . 
K 4 HOH A 66 1166 70 HOH HOH . 
K 4 HOH A 67 1167 42 HOH HOH . 
K 4 HOH A 68 1168 93 HOH HOH . 
K 4 HOH A 69 1169 73 HOH HOH . 
K 4 HOH A 70 1170 60 HOH HOH . 
K 4 HOH A 71 1171 101 HOH HOH . 
K 4 HOH A 72 1172 28 HOH HOH . 
K 4 HOH A 73 1173 18 HOH HOH . 
K 4 HOH A 74 1174 16 HOH HOH . 
K 4 HOH A 75 1175 90 HOH HOH . 
K 4 HOH A 76 1176 116 HOH HOH . 
K 4 HOH A 77 1177 12 HOH HOH . 
K 4 HOH A 78 1178 31 HOH HOH . 
K 4 HOH A 79 1179 79 HOH HOH . 
K 4 HOH A 80 1180 20 HOH HOH . 
K 4 HOH A 81 1181 22 HOH HOH . 
K 4 HOH A 82 1182 78 HOH HOH . 
K 4 HOH A 83 1183 115 HOH HOH . 
K 4 HOH A 84 1184 35 HOH HOH . 
K 4 HOH A 85 1185 5 HOH HOH . 
K 4 HOH A 86 1186 88 HOH HOH . 
K 4 HOH A 87 1187 2 HOH HOH . 
K 4 HOH A 88 1188 37 HOH HOH . 
K 4 HOH A 89 1189 97 HOH HOH . 
K 4 HOH A 90 1190 27 HOH HOH . 
K 4 HOH A 91 1191 32 HOH HOH . 
K 4 HOH A 92 1192 118 HOH HOH . 
K 4 HOH A 93 1193 100 HOH HOH . 
K 4 HOH A 94 1194 7 HOH HOH . 
K 4 HOH A 95 1195 66 HOH HOH . 
K 4 HOH A 96 1196 50 HOH HOH . 
K 4 HOH A 97 1197 71 HOH HOH . 
K 4 HOH A 98 1198 114 HOH HOH . 
K 4 HOH A 99 1199 85 HOH HOH . 
K 4 HOH A 100 1200 111 HOH HOH . 
K 4 HOH A 101 1201 77 HOH HOH . 
K 4 HOH A 102 1202 14 HOH HOH . 
K 4 HOH A 103 1203 49 HOH HOH . 
K 4 HOH A 104 1204 62 HOH HOH . 
K 4 HOH A 105 1205 80 HOH HOH . 
K 4 HOH A 106 1206 104 HOH HOH . 
K 4 HOH A 107 1207 109 HOH HOH . 
K 4 HOH A 108 1208 83 HOH HOH . 
K 4 HOH A 109 1209 106 HOH HOH . 
K 4 HOH A 110 1210 69 HOH HOH . 
K 4 HOH A 111 1211 110 HOH HOH . 
K 4 HOH A 112 1212 98 HOH HOH . 
K 4 HOH A 113 1213 86 HOH HOH . 
K 4 HOH A 114 1214 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 2 24.96 1.802 -0.032 1 39.4 ? C1 EDO 1005 A 1 
HETATM 2 O O1 EDO . . . F 2 24.611 1.809 1.343 1 46.91 ? O1 EDO 1005 A 1 
HETATM 3 C C2 EDO . . . F 2 23.822 1.41 -0.925 1 34.99 ? C2 EDO 1005 A 1 
HETATM 4 O O2 EDO . . . F 2 22.578 1.981 -0.569 1 29.12 ? O2 EDO 1005 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#