data_8BK2 # _model_server_result.job_id B0752lrO5510kqWsF7sNrA _model_server_result.datetime_utc '2024-10-25 20:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":301}' # _entry.id 8BK2 # _exptl.entry_id 8BK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.18 _cell.angle_gamma 90 _cell.entry_id 8BK2 _cell.length_a 77.153 _cell.length_b 135.641 _cell.length_c 121.53 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J,N,O,U,X,Y 1 1 B,F,G,K,L,P,Q,R,V,Z,AA 2 1 C,H,I,M,S,T,W,BA,CA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 27 H CYS 24 1_555 D SG CYS 101 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 D SG CYS 148 H CYS 145 1_555 D SG CYS 204 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 E SG CYS 23 L CYS 23 1_555 E SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf4 E SG CYS 136 L CYS 136 1_555 E SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 F SG CYS 27 D CYS 24 1_555 F SG CYS 101 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 F SG CYS 148 D CYS 145 1_555 F SG CYS 204 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf7 G SG CYS 23 E CYS 23 1_555 G SG CYS 89 E CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf8 G SG CYS 136 E CYS 136 1_555 G SG CYS 196 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf9 H SG CYS 27 F CYS 24 1_555 H SG CYS 101 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 H SG CYS 148 F CYS 145 1_555 H SG CYS 204 F CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 I SG CYS 23 G CYS 23 1_555 I SG CYS 89 G CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf12 I SG CYS 136 G CYS 136 1_555 I SG CYS 196 G CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8BK2 _atom_sites.fract_transf_matrix[1][1] 0.012961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003517 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 EDO A 1 301 6 EDO EDO . K 4 EDO B 1 301 7 EDO EDO . L 5 IMD B 1 302 2 IMD IMD . M 6 SO4 C 1 301 1 SO4 SO4 . N 7 P33 L 1 301 1 P33 P33 . O 8 MPD L 1 302 1 MPD MPD . P 4 EDO D 1 301 2 EDO EDO . Q 4 EDO D 1 302 3 EDO EDO . R 4 EDO E 1 301 1 EDO EDO . S 4 EDO F 1 301 4 EDO EDO . T 9 P6G G 1 301 1 P6G P6G . U 10 HOH A 1 401 146 HOH HOH . U 10 HOH A 2 402 96 HOH HOH . U 10 HOH A 3 403 98 HOH HOH . U 10 HOH A 4 404 119 HOH HOH . U 10 HOH A 5 405 94 HOH HOH . U 10 HOH A 6 406 158 HOH HOH . U 10 HOH A 7 407 31 HOH HOH . U 10 HOH A 8 408 97 HOH HOH . U 10 HOH A 9 409 106 HOH HOH . U 10 HOH A 10 410 118 HOH HOH . U 10 HOH A 11 411 169 HOH HOH . U 10 HOH A 12 412 46 HOH HOH . U 10 HOH A 13 413 105 HOH HOH . U 10 HOH A 14 414 207 HOH HOH . U 10 HOH A 15 415 167 HOH HOH . U 10 HOH A 16 416 161 HOH HOH . V 10 HOH B 1 401 160 HOH HOH . V 10 HOH B 2 402 1 HOH HOH . V 10 HOH B 3 403 63 HOH HOH . V 10 HOH B 4 404 25 HOH HOH . V 10 HOH B 5 405 93 HOH HOH . V 10 HOH B 6 406 190 HOH HOH . V 10 HOH B 7 407 20 HOH HOH . W 10 HOH C 1 401 175 HOH HOH . W 10 HOH C 2 402 156 HOH HOH . W 10 HOH C 3 403 163 HOH HOH . W 10 HOH C 4 404 138 HOH HOH . W 10 HOH C 5 405 195 HOH HOH . W 10 HOH C 6 406 26 HOH HOH . W 10 HOH C 7 407 61 HOH HOH . W 10 HOH C 8 408 206 HOH HOH . W 10 HOH C 9 409 50 HOH HOH . X 10 HOH H 1 301 152 HOH HOH . X 10 HOH H 2 302 56 HOH HOH . X 10 HOH H 3 303 177 HOH HOH . X 10 HOH H 4 304 107 HOH HOH . X 10 HOH H 5 305 181 HOH HOH . X 10 HOH H 6 306 100 HOH HOH . X 10 HOH H 7 307 174 HOH HOH . X 10 HOH H 8 308 5 HOH HOH . X 10 HOH H 9 309 99 HOH HOH . X 10 HOH H 10 310 83 HOH HOH . X 10 HOH H 11 311 6 HOH HOH . X 10 HOH H 12 312 27 HOH HOH . X 10 HOH H 13 313 103 HOH HOH . X 10 HOH H 14 314 122 HOH HOH . X 10 HOH H 15 315 112 HOH HOH . X 10 HOH H 16 316 139 HOH HOH . X 10 HOH H 17 317 23 HOH HOH . X 10 HOH H 18 318 64 HOH HOH . X 10 HOH H 19 319 95 HOH HOH . X 10 HOH H 20 320 176 HOH HOH . X 10 HOH H 21 321 16 HOH HOH . X 10 HOH H 22 322 88 HOH HOH . X 10 HOH H 23 323 129 HOH HOH . X 10 HOH H 24 324 113 HOH HOH . X 10 HOH H 25 325 79 HOH HOH . X 10 HOH H 26 326 58 HOH HOH . X 10 HOH H 27 327 147 HOH HOH . X 10 HOH H 28 328 49 HOH HOH . X 10 HOH H 29 329 57 HOH HOH . X 10 HOH H 30 330 133 HOH HOH . X 10 HOH H 31 331 198 HOH HOH . X 10 HOH H 32 332 72 HOH HOH . X 10 HOH H 33 333 28 HOH HOH . X 10 HOH H 34 334 197 HOH HOH . X 10 HOH H 35 335 157 HOH HOH . X 10 HOH H 36 336 30 HOH HOH . X 10 HOH H 37 337 69 HOH HOH . X 10 HOH H 38 338 43 HOH HOH . X 10 HOH H 39 339 200 HOH HOH . X 10 HOH H 40 340 183 HOH HOH . X 10 HOH H 41 341 59 HOH HOH . Y 10 HOH L 1 401 151 HOH HOH . Y 10 HOH L 2 402 142 HOH HOH . Y 10 HOH L 3 403 3 HOH HOH . Y 10 HOH L 4 404 191 HOH HOH . Y 10 HOH L 5 405 153 HOH HOH . Y 10 HOH L 6 406 124 HOH HOH . Y 10 HOH L 7 407 135 HOH HOH . Y 10 HOH L 8 408 132 HOH HOH . Y 10 HOH L 9 409 12 HOH HOH . Y 10 HOH L 10 410 120 HOH HOH . Y 10 HOH L 11 411 205 HOH HOH . Y 10 HOH L 12 412 149 HOH HOH . Y 10 HOH L 13 413 19 HOH HOH . Y 10 HOH L 14 414 131 HOH HOH . Y 10 HOH L 15 415 117 HOH HOH . Y 10 HOH L 16 416 35 HOH HOH . Y 10 HOH L 17 417 123 HOH HOH . Y 10 HOH L 18 418 140 HOH HOH . Y 10 HOH L 19 419 21 HOH HOH . Y 10 HOH L 20 420 150 HOH HOH . Y 10 HOH L 21 421 121 HOH HOH . Y 10 HOH L 22 422 92 HOH HOH . Y 10 HOH L 23 423 17 HOH HOH . Y 10 HOH L 24 424 137 HOH HOH . Y 10 HOH L 25 425 165 HOH HOH . Y 10 HOH L 26 426 203 HOH HOH . Y 10 HOH L 27 427 136 HOH HOH . Y 10 HOH L 28 428 36 HOH HOH . Y 10 HOH L 29 429 164 HOH HOH . Y 10 HOH L 30 430 4 HOH HOH . Y 10 HOH L 31 431 145 HOH HOH . Y 10 HOH L 32 432 7 HOH HOH . Y 10 HOH L 33 433 89 HOH HOH . Y 10 HOH L 34 434 101 HOH HOH . Y 10 HOH L 35 435 192 HOH HOH . Y 10 HOH L 36 436 41 HOH HOH . Y 10 HOH L 37 437 81 HOH HOH . Y 10 HOH L 38 438 194 HOH HOH . Y 10 HOH L 39 439 32 HOH HOH . Y 10 HOH L 40 440 78 HOH HOH . Y 10 HOH L 41 441 143 HOH HOH . Y 10 HOH L 42 442 66 HOH HOH . Y 10 HOH L 43 443 178 HOH HOH . Y 10 HOH L 44 444 188 HOH HOH . Z 10 HOH D 1 401 85 HOH HOH . Z 10 HOH D 2 402 54 HOH HOH . Z 10 HOH D 3 403 42 HOH HOH . Z 10 HOH D 4 404 8 HOH HOH . Z 10 HOH D 5 405 201 HOH HOH . Z 10 HOH D 6 406 84 HOH HOH . Z 10 HOH D 7 407 48 HOH HOH . Z 10 HOH D 8 408 104 HOH HOH . Z 10 HOH D 9 409 13 HOH HOH . Z 10 HOH D 10 410 210 HOH HOH . Z 10 HOH D 11 411 90 HOH HOH . Z 10 HOH D 12 412 37 HOH HOH . Z 10 HOH D 13 413 44 HOH HOH . Z 10 HOH D 14 414 14 HOH HOH . Z 10 HOH D 15 415 2 HOH HOH . Z 10 HOH D 16 416 134 HOH HOH . Z 10 HOH D 17 417 38 HOH HOH . Z 10 HOH D 18 418 187 HOH HOH . Z 10 HOH D 19 419 128 HOH HOH . Z 10 HOH D 20 420 162 HOH HOH . Z 10 HOH D 21 421 74 HOH HOH . Z 10 HOH D 22 422 91 HOH HOH . Z 10 HOH D 23 423 196 HOH HOH . Z 10 HOH D 24 424 71 HOH HOH . Z 10 HOH D 25 425 60 HOH HOH . Z 10 HOH D 26 426 166 HOH HOH . Z 10 HOH D 27 427 199 HOH HOH . Z 10 HOH D 28 428 209 HOH HOH . AA 10 HOH E 1 401 180 HOH HOH . AA 10 HOH E 2 402 148 HOH HOH . AA 10 HOH E 3 403 53 HOH HOH . AA 10 HOH E 4 404 10 HOH HOH . AA 10 HOH E 5 405 76 HOH HOH . AA 10 HOH E 6 406 172 HOH HOH . AA 10 HOH E 7 407 82 HOH HOH . AA 10 HOH E 8 408 127 HOH HOH . AA 10 HOH E 9 409 173 HOH HOH . AA 10 HOH E 10 410 45 HOH HOH . AA 10 HOH E 11 411 110 HOH HOH . AA 10 HOH E 12 412 115 HOH HOH . AA 10 HOH E 13 413 168 HOH HOH . AA 10 HOH E 14 414 15 HOH HOH . AA 10 HOH E 15 415 24 HOH HOH . AA 10 HOH E 16 416 67 HOH HOH . AA 10 HOH E 17 417 189 HOH HOH . AA 10 HOH E 18 418 202 HOH HOH . AA 10 HOH E 19 419 11 HOH HOH . AA 10 HOH E 20 420 39 HOH HOH . AA 10 HOH E 21 421 170 HOH HOH . AA 10 HOH E 22 422 68 HOH HOH . AA 10 HOH E 23 423 80 HOH HOH . AA 10 HOH E 24 424 193 HOH HOH . AA 10 HOH E 25 425 65 HOH HOH . AA 10 HOH E 26 426 212 HOH HOH . AA 10 HOH E 27 427 75 HOH HOH . AA 10 HOH E 28 428 52 HOH HOH . AA 10 HOH E 29 429 18 HOH HOH . AA 10 HOH E 30 430 179 HOH HOH . AA 10 HOH E 31 431 40 HOH HOH . AA 10 HOH E 32 432 109 HOH HOH . AA 10 HOH E 33 433 77 HOH HOH . AA 10 HOH E 34 434 130 HOH HOH . AA 10 HOH E 35 435 155 HOH HOH . AA 10 HOH E 36 436 126 HOH HOH . AA 10 HOH E 37 437 144 HOH HOH . AA 10 HOH E 38 438 154 HOH HOH . AA 10 HOH E 39 439 73 HOH HOH . AA 10 HOH E 40 440 185 HOH HOH . BA 10 HOH F 1 401 141 HOH HOH . BA 10 HOH F 2 402 51 HOH HOH . BA 10 HOH F 3 403 171 HOH HOH . BA 10 HOH F 4 404 182 HOH HOH . BA 10 HOH F 5 405 55 HOH HOH . BA 10 HOH F 6 406 116 HOH HOH . BA 10 HOH F 7 407 29 HOH HOH . BA 10 HOH F 8 408 186 HOH HOH . BA 10 HOH F 9 409 87 HOH HOH . CA 10 HOH G 1 401 47 HOH HOH . CA 10 HOH G 2 402 204 HOH HOH . CA 10 HOH G 3 403 211 HOH HOH . CA 10 HOH G 4 404 34 HOH HOH . CA 10 HOH G 5 405 213 HOH HOH . CA 10 HOH G 6 406 62 HOH HOH . CA 10 HOH G 7 407 184 HOH HOH . CA 10 HOH G 8 408 9 HOH HOH . CA 10 HOH G 9 409 33 HOH HOH . CA 10 HOH G 10 410 208 HOH HOH . CA 10 HOH G 11 411 159 HOH HOH . CA 10 HOH G 12 412 114 HOH HOH . CA 10 HOH G 13 413 108 HOH HOH . CA 10 HOH G 14 414 102 HOH HOH . CA 10 HOH G 15 415 111 HOH HOH . CA 10 HOH G 16 416 70 HOH HOH . CA 10 HOH G 17 417 125 HOH HOH . CA 10 HOH G 18 418 22 HOH HOH . CA 10 HOH G 19 419 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . P 4 83.834 10.278 67.999 1 50.38 ? C1 EDO 301 D 1 HETATM 2 O O1 EDO . . . P 4 82.891 9.887 68.961 1 54.85 ? O1 EDO 301 D 1 HETATM 3 C C2 EDO . . . P 4 84.321 9.056 67.193 1 53.58 ? C2 EDO 301 D 1 HETATM 4 O O2 EDO . . . P 4 85.595 8.642 67.622 1 55.35 ? O2 EDO 301 D 1 HETATM 5 H H11 EDO . . . P 4 83.427 10.918 67.395 1 60.46 ? H11 EDO 301 D 1 HETATM 6 H H12 EDO . . . P 4 84.591 10.69 68.444 1 60.46 ? H12 EDO 301 D 1 HETATM 7 H HO1 EDO . . . P 4 82.874 10.478 69.566 1 65.82 ? HO1 EDO 301 D 1 HETATM 8 H H21 EDO . . . P 4 83.694 8.326 67.313 1 64.29 ? H21 EDO 301 D 1 HETATM 9 H H22 EDO . . . P 4 84.365 9.293 66.253 1 64.29 ? H22 EDO 301 D 1 HETATM 10 H HO2 EDO . . . P 4 86.172 9.213 67.374 1 66.42 ? HO2 EDO 301 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #