data_8BK4 # _model_server_result.job_id 7pWbdKZQwwGr066RdaVWmQ _model_server_result.datetime_utc '2024-11-21 23:21:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8BK4 # _exptl.entry_id 8BK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BK4 _cell.length_a 42.493 _cell.length_b 57.529 _cell.length_c 67.712 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8BK4 _atom_sites.fract_transf_matrix[1][1] 0.023533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 202 GOL GOL . C 3 WRL A 1 202 206 WRL LIG . D 4 PO4 A 1 203 207 PO4 PO4 . E 5 HOH A 1 301 110 HOH HOH . E 5 HOH A 2 302 56 HOH HOH . E 5 HOH A 3 303 130 HOH HOH . E 5 HOH A 4 304 153 HOH HOH . E 5 HOH A 5 305 164 HOH HOH . E 5 HOH A 6 306 119 HOH HOH . E 5 HOH A 7 307 76 HOH HOH . E 5 HOH A 8 308 40 HOH HOH . E 5 HOH A 9 309 4 HOH HOH . E 5 HOH A 10 310 33 HOH HOH . E 5 HOH A 11 311 157 HOH HOH . E 5 HOH A 12 312 99 HOH HOH . E 5 HOH A 13 313 25 HOH HOH . E 5 HOH A 14 314 62 HOH HOH . E 5 HOH A 15 315 12 HOH HOH . E 5 HOH A 16 316 31 HOH HOH . E 5 HOH A 17 317 79 HOH HOH . E 5 HOH A 18 318 74 HOH HOH . E 5 HOH A 19 319 21 HOH HOH . E 5 HOH A 20 320 6 HOH HOH . E 5 HOH A 21 321 128 HOH HOH . E 5 HOH A 22 322 29 HOH HOH . E 5 HOH A 23 323 17 HOH HOH . E 5 HOH A 24 324 7 HOH HOH . E 5 HOH A 25 325 112 HOH HOH . E 5 HOH A 26 326 174 HOH HOH . E 5 HOH A 27 327 149 HOH HOH . E 5 HOH A 28 328 178 HOH HOH . E 5 HOH A 29 329 95 HOH HOH . E 5 HOH A 30 330 136 HOH HOH . E 5 HOH A 31 331 27 HOH HOH . E 5 HOH A 32 332 173 HOH HOH . E 5 HOH A 33 333 78 HOH HOH . E 5 HOH A 34 334 19 HOH HOH . E 5 HOH A 35 335 152 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 8 HOH HOH . E 5 HOH A 38 338 64 HOH HOH . E 5 HOH A 39 339 90 HOH HOH . E 5 HOH A 40 340 22 HOH HOH . E 5 HOH A 41 341 59 HOH HOH . E 5 HOH A 42 342 165 HOH HOH . E 5 HOH A 43 343 2 HOH HOH . E 5 HOH A 44 344 89 HOH HOH . E 5 HOH A 45 345 46 HOH HOH . E 5 HOH A 46 346 121 HOH HOH . E 5 HOH A 47 347 100 HOH HOH . E 5 HOH A 48 348 34 HOH HOH . E 5 HOH A 49 349 69 HOH HOH . E 5 HOH A 50 350 101 HOH HOH . E 5 HOH A 51 351 32 HOH HOH . E 5 HOH A 52 352 108 HOH HOH . E 5 HOH A 53 353 109 HOH HOH . E 5 HOH A 54 354 20 HOH HOH . E 5 HOH A 55 355 92 HOH HOH . E 5 HOH A 56 356 10 HOH HOH . E 5 HOH A 57 357 158 HOH HOH . E 5 HOH A 58 358 26 HOH HOH . E 5 HOH A 59 359 3 HOH HOH . E 5 HOH A 60 360 58 HOH HOH . E 5 HOH A 61 361 47 HOH HOH . E 5 HOH A 62 362 144 HOH HOH . E 5 HOH A 63 363 103 HOH HOH . E 5 HOH A 64 364 13 HOH HOH . E 5 HOH A 65 365 186 HOH HOH . E 5 HOH A 66 366 98 HOH HOH . E 5 HOH A 67 367 179 HOH HOH . E 5 HOH A 68 368 35 HOH HOH . E 5 HOH A 69 369 41 HOH HOH . E 5 HOH A 70 370 104 HOH HOH . E 5 HOH A 71 371 15 HOH HOH . E 5 HOH A 72 372 93 HOH HOH . E 5 HOH A 73 373 75 HOH HOH . E 5 HOH A 74 374 57 HOH HOH . E 5 HOH A 75 375 45 HOH HOH . E 5 HOH A 76 376 122 HOH HOH . E 5 HOH A 77 377 111 HOH HOH . E 5 HOH A 78 378 23 HOH HOH . E 5 HOH A 79 379 42 HOH HOH . E 5 HOH A 80 380 80 HOH HOH . E 5 HOH A 81 381 9 HOH HOH . E 5 HOH A 82 382 44 HOH HOH . E 5 HOH A 83 383 87 HOH HOH . E 5 HOH A 84 384 148 HOH HOH . E 5 HOH A 85 385 159 HOH HOH . E 5 HOH A 86 386 39 HOH HOH . E 5 HOH A 87 387 83 HOH HOH . E 5 HOH A 88 388 66 HOH HOH . E 5 HOH A 89 389 150 HOH HOH . E 5 HOH A 90 390 73 HOH HOH . E 5 HOH A 91 391 61 HOH HOH . E 5 HOH A 92 392 16 HOH HOH . E 5 HOH A 93 393 37 HOH HOH . E 5 HOH A 94 394 43 HOH HOH . E 5 HOH A 95 395 102 HOH HOH . E 5 HOH A 96 396 123 HOH HOH . E 5 HOH A 97 397 156 HOH HOH . E 5 HOH A 98 398 151 HOH HOH . E 5 HOH A 99 399 94 HOH HOH . E 5 HOH A 100 400 96 HOH HOH . E 5 HOH A 101 401 11 HOH HOH . E 5 HOH A 102 402 53 HOH HOH . E 5 HOH A 103 403 126 HOH HOH . E 5 HOH A 104 404 49 HOH HOH . E 5 HOH A 105 405 55 HOH HOH . E 5 HOH A 106 406 18 HOH HOH . E 5 HOH A 107 407 169 HOH HOH . E 5 HOH A 108 408 91 HOH HOH . E 5 HOH A 109 409 86 HOH HOH . E 5 HOH A 110 410 160 HOH HOH . E 5 HOH A 111 411 106 HOH HOH . E 5 HOH A 112 412 67 HOH HOH . E 5 HOH A 113 413 88 HOH HOH . E 5 HOH A 114 414 63 HOH HOH . E 5 HOH A 115 415 38 HOH HOH . E 5 HOH A 116 416 181 HOH HOH . E 5 HOH A 117 417 107 HOH HOH . E 5 HOH A 118 418 113 HOH HOH . E 5 HOH A 119 419 176 HOH HOH . E 5 HOH A 120 420 84 HOH HOH . E 5 HOH A 121 421 183 HOH HOH . E 5 HOH A 122 422 97 HOH HOH . E 5 HOH A 123 423 180 HOH HOH . E 5 HOH A 124 424 154 HOH HOH . E 5 HOH A 125 425 185 HOH HOH . E 5 HOH A 126 426 168 HOH HOH . E 5 HOH A 127 427 182 HOH HOH . E 5 HOH A 128 428 60 HOH HOH . E 5 HOH A 129 429 171 HOH HOH . E 5 HOH A 130 430 71 HOH HOH . E 5 HOH A 131 431 170 HOH HOH . E 5 HOH A 132 432 139 HOH HOH . E 5 HOH A 133 433 140 HOH HOH . E 5 HOH A 134 434 138 HOH HOH . E 5 HOH A 135 435 166 HOH HOH . E 5 HOH A 136 436 82 HOH HOH . E 5 HOH A 137 437 175 HOH HOH . E 5 HOH A 138 438 177 HOH HOH . E 5 HOH A 139 439 65 HOH HOH . E 5 HOH A 140 440 48 HOH HOH . E 5 HOH A 141 441 68 HOH HOH . E 5 HOH A 142 442 163 HOH HOH . E 5 HOH A 143 443 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -8.841 -12.942 19.626 1 18.01 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -7.901 -13.927 19.323 1 19.85 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 -8.9 -12.02 18.358 1 22.08 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 -9.255 -12.74 17.2 1 18.51 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 -9.951 -10.938 18.664 1 18.52 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 -9.677 -9.835 17.789 1 19.45 ? O3 GOL 201 A 1 HETATM 7 H H11 GOL . . . B 2 -8.6 -12.415 20.404 1 21.72 ? H11 GOL 201 A 1 HETATM 8 H H12 GOL . . . B 2 -9.722 -13.303 19.811 1 21.72 ? H12 GOL 201 A 1 HETATM 9 H HO1 GOL . . . B 2 -7.754 -14.353 20.049 1 23.93 ? HO1 GOL 201 A 1 HETATM 10 H H2 GOL . . . B 2 -8.026 -11.63 18.206 1 26.6 ? H2 GOL 201 A 1 HETATM 11 H HO2 GOL . . . B 2 -8.548 -13.097 16.884 1 22.32 ? HO2 GOL 201 A 1 HETATM 12 H H31 GOL . . . B 2 -9.899 -10.706 19.605 1 22.32 ? H31 GOL 201 A 1 HETATM 13 H H32 GOL . . . B 2 -10.836 -11.316 18.543 1 22.32 ? H32 GOL 201 A 1 HETATM 14 H HO3 GOL . . . B 2 -8.903 -9.547 17.993 1 23.45 ? HO3 GOL 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #