data_8BK4 # _model_server_result.job_id PTLYK3NBYPa2TMEp2PoM5Q _model_server_result.datetime_utc '2024-11-21 22:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8BK4 # _exptl.entry_id 8BK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.423 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-[(1~{S})-1-pyridin-2-ylethyl]-3,10-diazabicyclo[4.3.1]decan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BK4 _cell.length_a 42.493 _cell.length_b 57.529 _cell.length_c 67.712 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H25 Cl2 N3 O4 S' _chem_comp.formula_weight 498.423 _chem_comp.id WRL _chem_comp.mon_nstd_flag . _chem_comp.name (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfonyl-5-(hydroxymethyl)-3-[(1~{S})-1-pyridin-2-ylethyl]-3,10-diazabicyclo[4.3.1]decan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C1 WRL sing 393 n n C1 C22 WRL doub 394 n y C1 C2 WRL sing 395 n y C22 C21 WRL sing 396 n y C2 C3 WRL doub 397 n y C21 CL2 WRL sing 398 n n C21 C20 WRL doub 399 n y O4 S1 WRL doub 400 n n C3 C20 WRL sing 401 n y C3 S1 WRL sing 402 n n S1 O1 WRL doub 403 n n S1 N1 WRL sing 404 n n C17 C16 WRL doub 405 n y C17 C18 WRL sing 406 n y C16 C15 WRL sing 407 n y C18 C14 WRL doub 408 n y N1 C4 WRL sing 409 n n N1 C8 WRL sing 410 n n C4 C19 WRL sing 411 n n C4 C5 WRL sing 412 n n C15 N3 WRL doub 413 n y C14 N3 WRL sing 414 n y C14 C12 WRL sing 415 n n C19 O3 WRL doub 416 n n C19 N2 WRL sing 417 n n C11 N2 WRL sing 418 n n C11 C9 WRL sing 419 n n N2 C12 WRL sing 420 n n C8 C9 WRL sing 421 n n C8 C7 WRL sing 422 n n C5 C6 WRL sing 423 n n C12 C13 WRL sing 424 n n C9 C10 WRL sing 425 n n C7 C6 WRL sing 426 n n C10 O2 WRL sing 427 n n C4 H2 WRL sing 428 n n C5 H3 WRL sing 429 n n C5 H4 WRL sing 430 n n C6 H5 WRL sing 431 n n C6 H6 WRL sing 432 n n C7 H7 WRL sing 433 n n C7 H8 WRL sing 434 n n C8 H9 WRL sing 435 n n C10 H12 WRL sing 436 n n C10 H11 WRL sing 437 n n C13 H18 WRL sing 438 n n C13 H17 WRL sing 439 n n C13 H19 WRL sing 440 n n C15 H20 WRL sing 441 n n C17 H22 WRL sing 442 n n C20 H24 WRL sing 443 n n C22 H25 WRL sing 444 n n C11 H15 WRL sing 445 n n C11 H14 WRL sing 446 n n C12 H16 WRL sing 447 n n C16 H21 WRL sing 448 n n C18 H23 WRL sing 449 n n C2 H1 WRL sing 450 n n C9 H10 WRL sing 451 n n O2 H13 WRL sing 452 n n # _atom_sites.entry_id 8BK4 _atom_sites.fract_transf_matrix[1][1] 0.023533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 202 GOL GOL . C 3 WRL A 1 202 206 WRL LIG . D 4 PO4 A 1 203 207 PO4 PO4 . E 5 HOH A 1 301 110 HOH HOH . E 5 HOH A 2 302 56 HOH HOH . E 5 HOH A 3 303 130 HOH HOH . E 5 HOH A 4 304 153 HOH HOH . E 5 HOH A 5 305 164 HOH HOH . E 5 HOH A 6 306 119 HOH HOH . E 5 HOH A 7 307 76 HOH HOH . E 5 HOH A 8 308 40 HOH HOH . E 5 HOH A 9 309 4 HOH HOH . E 5 HOH A 10 310 33 HOH HOH . E 5 HOH A 11 311 157 HOH HOH . E 5 HOH A 12 312 99 HOH HOH . E 5 HOH A 13 313 25 HOH HOH . E 5 HOH A 14 314 62 HOH HOH . E 5 HOH A 15 315 12 HOH HOH . E 5 HOH A 16 316 31 HOH HOH . E 5 HOH A 17 317 79 HOH HOH . E 5 HOH A 18 318 74 HOH HOH . E 5 HOH A 19 319 21 HOH HOH . E 5 HOH A 20 320 6 HOH HOH . E 5 HOH A 21 321 128 HOH HOH . E 5 HOH A 22 322 29 HOH HOH . E 5 HOH A 23 323 17 HOH HOH . E 5 HOH A 24 324 7 HOH HOH . E 5 HOH A 25 325 112 HOH HOH . E 5 HOH A 26 326 174 HOH HOH . E 5 HOH A 27 327 149 HOH HOH . E 5 HOH A 28 328 178 HOH HOH . E 5 HOH A 29 329 95 HOH HOH . E 5 HOH A 30 330 136 HOH HOH . E 5 HOH A 31 331 27 HOH HOH . E 5 HOH A 32 332 173 HOH HOH . E 5 HOH A 33 333 78 HOH HOH . E 5 HOH A 34 334 19 HOH HOH . E 5 HOH A 35 335 152 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 8 HOH HOH . E 5 HOH A 38 338 64 HOH HOH . E 5 HOH A 39 339 90 HOH HOH . E 5 HOH A 40 340 22 HOH HOH . E 5 HOH A 41 341 59 HOH HOH . E 5 HOH A 42 342 165 HOH HOH . E 5 HOH A 43 343 2 HOH HOH . E 5 HOH A 44 344 89 HOH HOH . E 5 HOH A 45 345 46 HOH HOH . E 5 HOH A 46 346 121 HOH HOH . E 5 HOH A 47 347 100 HOH HOH . E 5 HOH A 48 348 34 HOH HOH . E 5 HOH A 49 349 69 HOH HOH . E 5 HOH A 50 350 101 HOH HOH . E 5 HOH A 51 351 32 HOH HOH . E 5 HOH A 52 352 108 HOH HOH . E 5 HOH A 53 353 109 HOH HOH . E 5 HOH A 54 354 20 HOH HOH . E 5 HOH A 55 355 92 HOH HOH . E 5 HOH A 56 356 10 HOH HOH . E 5 HOH A 57 357 158 HOH HOH . E 5 HOH A 58 358 26 HOH HOH . E 5 HOH A 59 359 3 HOH HOH . E 5 HOH A 60 360 58 HOH HOH . E 5 HOH A 61 361 47 HOH HOH . E 5 HOH A 62 362 144 HOH HOH . E 5 HOH A 63 363 103 HOH HOH . E 5 HOH A 64 364 13 HOH HOH . E 5 HOH A 65 365 186 HOH HOH . E 5 HOH A 66 366 98 HOH HOH . E 5 HOH A 67 367 179 HOH HOH . E 5 HOH A 68 368 35 HOH HOH . E 5 HOH A 69 369 41 HOH HOH . E 5 HOH A 70 370 104 HOH HOH . E 5 HOH A 71 371 15 HOH HOH . E 5 HOH A 72 372 93 HOH HOH . E 5 HOH A 73 373 75 HOH HOH . E 5 HOH A 74 374 57 HOH HOH . E 5 HOH A 75 375 45 HOH HOH . E 5 HOH A 76 376 122 HOH HOH . E 5 HOH A 77 377 111 HOH HOH . E 5 HOH A 78 378 23 HOH HOH . E 5 HOH A 79 379 42 HOH HOH . E 5 HOH A 80 380 80 HOH HOH . E 5 HOH A 81 381 9 HOH HOH . E 5 HOH A 82 382 44 HOH HOH . E 5 HOH A 83 383 87 HOH HOH . E 5 HOH A 84 384 148 HOH HOH . E 5 HOH A 85 385 159 HOH HOH . E 5 HOH A 86 386 39 HOH HOH . E 5 HOH A 87 387 83 HOH HOH . E 5 HOH A 88 388 66 HOH HOH . E 5 HOH A 89 389 150 HOH HOH . E 5 HOH A 90 390 73 HOH HOH . E 5 HOH A 91 391 61 HOH HOH . E 5 HOH A 92 392 16 HOH HOH . E 5 HOH A 93 393 37 HOH HOH . E 5 HOH A 94 394 43 HOH HOH . E 5 HOH A 95 395 102 HOH HOH . E 5 HOH A 96 396 123 HOH HOH . E 5 HOH A 97 397 156 HOH HOH . E 5 HOH A 98 398 151 HOH HOH . E 5 HOH A 99 399 94 HOH HOH . E 5 HOH A 100 400 96 HOH HOH . E 5 HOH A 101 401 11 HOH HOH . E 5 HOH A 102 402 53 HOH HOH . E 5 HOH A 103 403 126 HOH HOH . E 5 HOH A 104 404 49 HOH HOH . E 5 HOH A 105 405 55 HOH HOH . E 5 HOH A 106 406 18 HOH HOH . E 5 HOH A 107 407 169 HOH HOH . E 5 HOH A 108 408 91 HOH HOH . E 5 HOH A 109 409 86 HOH HOH . E 5 HOH A 110 410 160 HOH HOH . E 5 HOH A 111 411 106 HOH HOH . E 5 HOH A 112 412 67 HOH HOH . E 5 HOH A 113 413 88 HOH HOH . E 5 HOH A 114 414 63 HOH HOH . E 5 HOH A 115 415 38 HOH HOH . E 5 HOH A 116 416 181 HOH HOH . E 5 HOH A 117 417 107 HOH HOH . E 5 HOH A 118 418 113 HOH HOH . E 5 HOH A 119 419 176 HOH HOH . E 5 HOH A 120 420 84 HOH HOH . E 5 HOH A 121 421 183 HOH HOH . E 5 HOH A 122 422 97 HOH HOH . E 5 HOH A 123 423 180 HOH HOH . E 5 HOH A 124 424 154 HOH HOH . E 5 HOH A 125 425 185 HOH HOH . E 5 HOH A 126 426 168 HOH HOH . E 5 HOH A 127 427 182 HOH HOH . E 5 HOH A 128 428 60 HOH HOH . E 5 HOH A 129 429 171 HOH HOH . E 5 HOH A 130 430 71 HOH HOH . E 5 HOH A 131 431 170 HOH HOH . E 5 HOH A 132 432 139 HOH HOH . E 5 HOH A 133 433 140 HOH HOH . E 5 HOH A 134 434 138 HOH HOH . E 5 HOH A 135 435 166 HOH HOH . E 5 HOH A 136 436 82 HOH HOH . E 5 HOH A 137 437 175 HOH HOH . E 5 HOH A 138 438 177 HOH HOH . E 5 HOH A 139 439 65 HOH HOH . E 5 HOH A 140 440 48 HOH HOH . E 5 HOH A 141 441 68 HOH HOH . E 5 HOH A 142 442 163 HOH HOH . E 5 HOH A 143 443 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 WRL . . . C 3 9.131 6.841 20.575 1 9.89 ? N1 WRL 202 A 1 HETATM 2 N N3 WRL . . . C 3 9.548 12.955 22.009 1 15.56 ? N3 WRL 202 A 1 HETATM 3 C C4 WRL . . . C 3 7.771 7.316 20.829 1 9.89 ? C4 WRL 202 A 1 HETATM 4 C C5 WRL . . . C 3 7.173 6.273 21.78 1 9.54 ? C5 WRL 202 A 1 HETATM 5 C C6 WRL . . . C 3 8.018 6.088 23.041 1 8.95 ? C6 WRL 202 A 1 HETATM 6 C C7 WRL . . . C 3 9.436 5.698 22.667 1 11.96 ? C7 WRL 202 A 1 HETATM 7 C C8 WRL . . . C 3 10.057 6.718 21.719 1 8.31 ? C8 WRL 202 A 1 HETATM 8 C C10 WRL . . . C 3 11.906 8.083 22.688 1 13.66 ? C10 WRL 202 A 1 HETATM 9 C C13 WRL . . . C 3 8.457 11.068 23.648 1 11.2 ? C13 WRL 202 A 1 HETATM 10 C C15 WRL . . . C 3 10.185 13.891 21.281 1 13.59 ? C15 WRL 202 A 1 HETATM 11 C C17 WRL . . . C 3 9.539 12.912 19.244 1 13.35 ? C17 WRL 202 A 1 HETATM 12 C C20 WRL . . . C 3 12.216 6.834 18.626 1 12.97 ? C20 WRL 202 A 1 HETATM 13 C C21 WRL . . . C 3 13.206 7.646 18.101 1 13.42 ? C21 WRL 202 A 1 HETATM 14 C C22 WRL . . . C 3 12.93 8.83 17.452 1 15.54 ? C22 WRL 202 A 1 HETATM 15 C C1 WRL . . . C 3 11.605 9.198 17.35 1 12.82 ? C1 WRL 202 A 1 HETATM 16 C C11 WRL . . . C 3 9.989 9.255 21.538 1 11.4 ? C11 WRL 202 A 1 HETATM 17 C C12 WRL . . . C 3 8.202 10.914 22.157 1 11.07 ? C12 WRL 202 A 1 HETATM 18 C C14 WRL . . . C 3 8.91 11.978 21.344 1 11.61 ? C14 WRL 202 A 1 HETATM 19 C C16 WRL . . . C 3 10.2 13.908 19.91 1 15.06 ? C16 WRL 202 A 1 HETATM 20 C C18 WRL . . . C 3 8.894 11.935 19.974 1 8.35 ? C18 WRL 202 A 1 HETATM 21 C C19 WRL . . . C 3 7.517 8.701 21.414 1 8.35 ? C19 WRL 202 A 1 HETATM 22 C C2 WRL . . . C 3 10.586 8.414 17.859 1 13.12 ? C2 WRL 202 A 1 HETATM 23 C C3 WRL . . . C 3 10.897 7.237 18.516 1 10.08 ? C3 WRL 202 A 1 HETATM 24 C C9 WRL . . . C 3 10.416 8.054 22.389 1 11.08 ? C9 WRL 202 A 1 HETATM 25 N N2 WRL . . . C 3 8.551 9.551 21.672 1 10.09 ? N2 WRL 202 A 1 HETATM 26 O O1 WRL . . . C 3 10.219 4.964 19.448 1 9.71 ? O1 WRL 202 A 1 HETATM 27 O O2 WRL . . . C 3 12.169 9.144 23.598 1 17.16 ? O2 WRL 202 A 1 HETATM 28 O O3 WRL . . . C 3 6.348 9.028 21.614 1 9.46 ? O3 WRL 202 A 1 HETATM 29 O O4 WRL . . . C 3 8.491 6.291 18.283 1 9.17 ? O4 WRL 202 A 1 HETATM 30 S S1 WRL . . . C 3 9.607 6.221 19.167 1 9.65 ? S1 WRL 202 A 1 HETATM 31 CL CL1 WRL . . . C 3 11.201 10.685 16.537 1 16.5 ? CL1 WRL 202 A 1 HETATM 32 CL CL2 WRL . . . C 3 14.864 7.143 18.237 1 23.39 ? CL2 WRL 202 A 1 HETATM 33 H H2 WRL . . . C 3 7.388 7.407 19.922 1 11.97 ? H2 WRL 202 A 1 HETATM 34 H H3 WRL . . . C 3 7.102 5.409 21.308 1 11.55 ? H3 WRL 202 A 1 HETATM 35 H H4 WRL . . . C 3 6.263 6.555 22.039 1 11.55 ? H4 WRL 202 A 1 HETATM 36 H H5 WRL . . . C 3 7.622 5.39 23.605 1 10.85 ? H5 WRL 202 A 1 HETATM 37 H H6 WRL . . . C 3 8.031 6.923 23.556 1 10.85 ? H6 WRL 202 A 1 HETATM 38 H H7 WRL . . . C 3 9.983 5.634 23.477 1 14.46 ? H7 WRL 202 A 1 HETATM 39 H H8 WRL . . . C 3 9.43 4.818 22.235 1 14.46 ? H8 WRL 202 A 1 HETATM 40 H H9 WRL . . . C 3 10.904 6.397 21.347 1 10.07 ? H9 WRL 202 A 1 HETATM 41 H H12 WRL . . . C 3 12.419 8.214 21.861 1 16.49 ? H12 WRL 202 A 1 HETATM 42 H H11 WRL . . . C 3 12.193 7.228 23.076 1 16.49 ? H11 WRL 202 A 1 HETATM 43 H H18 WRL . . . C 3 8.204 11.964 23.93 1 13.54 ? H18 WRL 202 A 1 HETATM 44 H H17 WRL . . . C 3 9.402 10.926 23.833 1 13.54 ? H17 WRL 202 A 1 HETATM 45 H H19 WRL . . . C 3 7.929 10.414 24.138 1 13.54 ? H19 WRL 202 A 1 HETATM 46 H H20 WRL . . . C 3 10.646 14.571 21.744 1 16.41 ? H20 WRL 202 A 1 HETATM 47 H H22 WRL . . . C 3 9.524 12.893 18.301 1 16.12 ? H22 WRL 202 A 1 HETATM 48 H H24 WRL . . . C 3 12.436 6.02 19.05 1 15.67 ? H24 WRL 202 A 1 HETATM 49 H H25 WRL . . . C 3 13.617 9.365 17.092 1 18.75 ? H25 WRL 202 A 1 HETATM 50 H H15 WRL . . . C 3 10.505 10.042 21.812 1 13.78 ? H15 WRL 202 A 1 HETATM 51 H H14 WRL . . . C 3 10.193 9.071 20.598 1 13.78 ? H14 WRL 202 A 1 HETATM 52 H H16 WRL . . . C 3 7.228 11.035 22.038 1 13.39 ? H16 WRL 202 A 1 HETATM 53 H H21 WRL . . . C 3 10.653 14.588 19.44 1 18.17 ? H21 WRL 202 A 1 HETATM 54 H H23 WRL . . . C 3 8.447 11.245 19.538 1 10.12 ? H23 WRL 202 A 1 HETATM 55 H H1 WRL . . . C 3 9.685 8.678 17.759 1 15.85 ? H1 WRL 202 A 1 HETATM 56 H H10 WRL . . . C 3 9.894 8.149 23.227 1 13.4 ? H10 WRL 202 A 1 HETATM 57 H H13 WRL . . . C 3 13.005 9.212 23.709 1 20.7 ? H13 WRL 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 57 #