data_8BKH
#
_model_server_result.job_id            mpWTl2a8LZqc-e7GsU3p6A 
_model_server_result.datetime_utc      '2024-11-05 07:55:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bkh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    8BKH 
#
_exptl.entry_id    8BKH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.9 
_cell.angle_gamma         90 
_cell.entry_id            8BKH 
_cell.length_a            64.1 
_cell.length_b            28.8 
_cell.length_c            35.8 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NE2 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             93 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              93 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              201 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        A 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        A 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.099 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 117 n n 
CHA C4D HEM doub 118 n n 
CHA HHA HEM sing 119 n n 
CHB C4A HEM sing 120 n n 
CHB C1B HEM doub 121 n n 
CHB HHB HEM sing 122 n n 
CHC C4B HEM sing 123 n n 
CHC C1C HEM doub 124 n n 
CHC HHC HEM sing 125 n n 
CHD C4C HEM doub 126 n n 
CHD C1D HEM sing 127 n n 
CHD HHD HEM sing 128 n n 
C1A C2A HEM doub 129 n y 
C1A NA HEM sing 130 n y 
C2A C3A HEM sing 131 n y 
C2A CAA HEM sing 132 n n 
C3A C4A HEM doub 133 n y 
C3A CMA HEM sing 134 n n 
C4A NA HEM sing 135 n y 
CMA HMA HEM sing 136 n n 
CMA HMAA HEM sing 137 n n 
CMA HMAB HEM sing 138 n n 
CAA CBA HEM sing 139 n n 
CAA HAA HEM sing 140 n n 
CAA HAAA HEM sing 141 n n 
CBA CGA HEM sing 142 n n 
CBA HBA HEM sing 143 n n 
CBA HBAA HEM sing 144 n n 
CGA O1A HEM doub 145 n n 
CGA O2A HEM sing 146 n n 
C1B C2B HEM sing 147 n n 
C1B NB HEM sing 148 n n 
C2B C3B HEM doub 149 n n 
C2B CMB HEM sing 150 n n 
C3B C4B HEM sing 151 n n 
C3B CAB HEM sing 152 n n 
C4B NB HEM doub 153 n n 
CMB HMB HEM sing 154 n n 
CMB HMBA HEM sing 155 n n 
CMB HMBB HEM sing 156 n n 
CAB CBB HEM doub 157 n n 
CAB HAB HEM sing 158 n n 
CBB HBB HEM sing 159 n n 
CBB HBBA HEM sing 160 n n 
C1C C2C HEM sing 161 n y 
C1C NC HEM sing 162 n y 
C2C C3C HEM doub 163 n y 
C2C CMC HEM sing 164 n n 
C3C C4C HEM sing 165 n y 
C3C CAC HEM sing 166 n n 
C4C NC HEM sing 167 n y 
CMC HMC HEM sing 168 n n 
CMC HMCA HEM sing 169 n n 
CMC HMCB HEM sing 170 n n 
CAC CBC HEM doub 171 n n 
CAC HAC HEM sing 172 n n 
CBC HBC HEM sing 173 n n 
CBC HBCA HEM sing 174 n n 
C1D C2D HEM sing 175 n n 
C1D ND HEM doub 176 n n 
C2D C3D HEM doub 177 n n 
C2D CMD HEM sing 178 n n 
C3D C4D HEM sing 179 n n 
C3D CAD HEM sing 180 n n 
C4D ND HEM sing 181 n n 
CMD HMD HEM sing 182 n n 
CMD HMDA HEM sing 183 n n 
CMD HMDB HEM sing 184 n n 
CAD CBD HEM sing 185 n n 
CAD HAD HEM sing 186 n n 
CAD HADA HEM sing 187 n n 
CBD CGD HEM sing 188 n n 
CBD HBD HEM sing 189 n n 
CBD HBDA HEM sing 190 n n 
CGD O1D HEM doub 191 n n 
CGD O2D HEM sing 192 n n 
O2A H2A HEM sing 193 n n 
O2D H2D HEM sing 194 n n 
FE NA HEM sing 195 n n 
FE NB HEM sing 196 n n 
FE NC HEM sing 197 n n 
FE ND HEM sing 198 n n 
#
_atom_sites.entry_id                     8BKH 
_atom_sites.fract_transf_matrix[1][1]    0.015601 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00474 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034722 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 201 HEM HEM . 
C 3 SO4 A 1 202 202 SO4 SO4 . 
D 3 SO4 A 1 203 203 SO4 SO4 . 
E 4 CMO A 1 204 204 CMO CMO . 
F 5 HOH A 1 301 54 HOH HOH . 
F 5 HOH A 2 302 71 HOH HOH . 
F 5 HOH A 3 303 75 HOH HOH . 
F 5 HOH A 4 304 7 HOH HOH . 
F 5 HOH A 5 305 85 HOH HOH . 
F 5 HOH A 6 306 105 HOH HOH . 
F 5 HOH A 7 307 63 HOH HOH . 
F 5 HOH A 8 308 10 HOH HOH . 
F 5 HOH A 9 309 57 HOH HOH . 
F 5 HOH A 10 310 66 HOH HOH . 
F 5 HOH A 11 311 38 HOH HOH . 
F 5 HOH A 12 312 30 HOH HOH . 
F 5 HOH A 13 313 47 HOH HOH . 
F 5 HOH A 14 314 35 HOH HOH . 
F 5 HOH A 15 315 25 HOH HOH . 
F 5 HOH A 16 316 31 HOH HOH . 
F 5 HOH A 17 317 53 HOH HOH . 
F 5 HOH A 18 318 41 HOH HOH . 
F 5 HOH A 19 319 16 HOH HOH . 
F 5 HOH A 20 320 45 HOH HOH . 
F 5 HOH A 21 321 107 HOH HOH . 
F 5 HOH A 22 322 44 HOH HOH . 
F 5 HOH A 23 323 102 HOH HOH . 
F 5 HOH A 24 324 29 HOH HOH . 
F 5 HOH A 25 325 93 HOH HOH . 
F 5 HOH A 26 326 19 HOH HOH . 
F 5 HOH A 27 327 37 HOH HOH . 
F 5 HOH A 28 328 109 HOH HOH . 
F 5 HOH A 29 329 8 HOH HOH . 
F 5 HOH A 30 330 103 HOH HOH . 
F 5 HOH A 31 331 50 HOH HOH . 
F 5 HOH A 32 332 77 HOH HOH . 
F 5 HOH A 33 333 90 HOH HOH . 
F 5 HOH A 34 334 9 HOH HOH . 
F 5 HOH A 35 335 13 HOH HOH . 
F 5 HOH A 36 336 82 HOH HOH . 
F 5 HOH A 37 337 28 HOH HOH . 
F 5 HOH A 38 338 88 HOH HOH . 
F 5 HOH A 39 339 12 HOH HOH . 
F 5 HOH A 40 340 52 HOH HOH . 
F 5 HOH A 41 341 18 HOH HOH . 
F 5 HOH A 42 342 4 HOH HOH . 
F 5 HOH A 43 343 78 HOH HOH . 
F 5 HOH A 44 344 110 HOH HOH . 
F 5 HOH A 45 345 27 HOH HOH . 
F 5 HOH A 46 346 14 HOH HOH . 
F 5 HOH A 47 347 1 HOH HOH . 
F 5 HOH A 48 348 24 HOH HOH . 
F 5 HOH A 49 349 84 HOH HOH . 
F 5 HOH A 50 350 86 HOH HOH . 
F 5 HOH A 51 351 48 HOH HOH . 
F 5 HOH A 52 352 60 HOH HOH . 
F 5 HOH A 53 353 21 HOH HOH . 
F 5 HOH A 54 354 2 HOH HOH . 
F 5 HOH A 55 355 68 HOH HOH . 
F 5 HOH A 56 356 5 HOH HOH . 
F 5 HOH A 57 357 69 HOH HOH . 
F 5 HOH A 58 358 26 HOH HOH . 
F 5 HOH A 59 359 40 HOH HOH . 
F 5 HOH A 60 360 15 HOH HOH . 
F 5 HOH A 61 361 61 HOH HOH . 
F 5 HOH A 62 362 73 HOH HOH . 
F 5 HOH A 63 363 56 HOH HOH . 
F 5 HOH A 64 364 46 HOH HOH . 
F 5 HOH A 65 365 32 HOH HOH . 
F 5 HOH A 66 366 81 HOH HOH . 
F 5 HOH A 67 367 42 HOH HOH . 
F 5 HOH A 68 368 36 HOH HOH . 
F 5 HOH A 69 369 72 HOH HOH . 
F 5 HOH A 70 370 97 HOH HOH . 
F 5 HOH A 71 371 70 HOH HOH . 
F 5 HOH A 72 372 92 HOH HOH . 
F 5 HOH A 73 373 20 HOH HOH . 
F 5 HOH A 74 374 58 HOH HOH . 
F 5 HOH A 75 375 43 HOH HOH . 
F 5 HOH A 76 376 34 HOH HOH . 
F 5 HOH A 77 377 111 HOH HOH . 
F 5 HOH A 78 378 3 HOH HOH . 
F 5 HOH A 79 379 17 HOH HOH . 
F 5 HOH A 80 380 87 HOH HOH . 
F 5 HOH A 81 381 89 HOH HOH . 
F 5 HOH A 82 382 100 HOH HOH . 
F 5 HOH A 83 383 33 HOH HOH . 
F 5 HOH A 84 384 6 HOH HOH . 
F 5 HOH A 85 385 95 HOH HOH . 
F 5 HOH A 86 386 22 HOH HOH . 
F 5 HOH A 87 387 59 HOH HOH . 
F 5 HOH A 88 388 11 HOH HOH . 
F 5 HOH A 89 389 98 HOH HOH . 
F 5 HOH A 90 390 99 HOH HOH . 
F 5 HOH A 91 391 51 HOH HOH . 
F 5 HOH A 92 392 80 HOH HOH . 
F 5 HOH A 93 393 39 HOH HOH . 
F 5 HOH A 94 394 67 HOH HOH . 
F 5 HOH A 95 395 23 HOH HOH . 
F 5 HOH A 96 396 112 HOH HOH . 
F 5 HOH A 97 397 49 HOH HOH . 
F 5 HOH A 98 398 94 HOH HOH . 
F 5 HOH A 99 399 65 HOH HOH . 
F 5 HOH A 100 400 55 HOH HOH . 
F 5 HOH A 101 401 62 HOH HOH . 
F 5 HOH A 102 402 64 HOH HOH . 
F 5 HOH A 103 403 91 HOH HOH . 
F 5 HOH A 104 404 79 HOH HOH . 
F 5 HOH A 105 405 108 HOH HOH . 
F 5 HOH A 106 406 74 HOH HOH . 
F 5 HOH A 107 407 96 HOH HOH . 
F 5 HOH A 108 408 83 HOH HOH . 
F 5 HOH A 109 409 101 HOH HOH . 
F 5 HOH A 110 410 106 HOH HOH . 
F 5 HOH A 111 411 76 HOH HOH . 
F 5 HOH A 112 412 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . A . B 2 15.691 3.227 5.171 1 10.97 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . A . B 2 13.689 0.119 8.308 1 10.39 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . A . B 2 13.213 -3.169 4.763 1 10.42 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . A . B 2 15.173 -0.019 1.635 1 12.06 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . A . B 2 15.169 2.657 6.32 1 10.41 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . A . B 2 15.089 3.325 7.594 1 10.49 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . A . B 2 14.556 2.439 8.479 1 11.36 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . A . B 2 14.281 1.242 7.765 1 11.27 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . A . B 2 14.326 2.631 9.976 1 12.71 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . A . B 2 15.52 4.747 7.869 1 11.98 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . A . B 2 14.304 5.696 8.053 1 12.15 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . A . B 2 13.386 5.717 6.851 1 13.66 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . A . B 2 13.837 6.108 5.752 1 14.83 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . A . B 2 12.171 5.404 6.993 1 16.36 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . A . B 2 13.361 -1.03 7.587 1 9.93 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . A . B 2 12.739 -2.162 8.17 1 10.22 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . A . B 2 12.681 -3.132 7.212 1 10.83 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . A . B 2 13.175 -2.494 5.982 1 9.46 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . A . B 2 12.343 -2.302 9.629 1 12.4 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . A . B 2 12.117 -4.489 7.304 1 11.95 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . A . B 2 12.359 -5.327 8.317 1 14.46 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . A . B 2 13.734 -2.62 3.603 1 10.3 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . A . B 2 13.915 -3.282 2.358 1 11.28 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . A . B 2 14.534 -2.39 1.501 1 10.99 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . A . B 2 14.683 -1.172 2.196 1 10.69 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . A . B 2 13.595 -4.727 2.07 1 13.13 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . A . B 2 15.018 -2.561 0.108 1 13.73 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . A . B 2 15.26 -3.699 -0.527 1 17.19 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . A . B 2 15.472 1.101 2.4 1 11.35 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . A . B 2 16.162 2.249 1.79 1 11.36 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . A . B 2 16.371 3.117 2.788 1 12.27 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . A . B 2 15.697 2.545 3.964 1 12.33 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . A . B 2 16.615 2.359 0.354 1 13.72 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . A . B 2 17.144 4.408 2.722 1 14.8 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . A . B 2 18.626 4.153 2.982 1 19.5 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . A . B 2 19.462 5.412 2.966 1 25.33 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . A . B 2 19.753 5.975 4.038 1 26.31 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . A . B 2 19.851 5.918 1.893 1 27.79 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . A . B 2 14.649 1.377 6.444 1 10.31 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . A . B 2 13.563 -1.237 6.292 1 9.88 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . A . B 2 14.147 -1.334 3.459 1 10.33 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . A . B 2 15.186 1.331 3.715 1 12.29 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . A . B 2 14.43 0.084 4.957 1 10.3 ? FE HEM 201 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#