data_8BKN # _model_server_result.job_id b4dEGieSo593a_zNbBE_rg _model_server_result.datetime_utc '2024-11-08 07:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8BKN # _exptl.entry_id 8BKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107 _cell.angle_gamma 90 _cell.entry_id 8BKN _cell.length_a 63 _cell.length_b 28.4 _cell.length_c 35.3 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.022 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 8BKN _atom_sites.fract_transf_matrix[1][1] 0.015873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004853 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 SO4 A 1 202 202 SO4 SO4 . D 3 SO4 A 1 203 203 SO4 SO4 . E 4 CMO A 1 204 204 CMO CMO . F 5 HOH A 1 301 77 HOH HOH . F 5 HOH A 2 302 121 HOH HOH . F 5 HOH A 3 303 114 HOH HOH . F 5 HOH A 4 304 120 HOH HOH . F 5 HOH A 5 305 99 HOH HOH . F 5 HOH A 6 306 125 HOH HOH . F 5 HOH A 7 307 110 HOH HOH . F 5 HOH A 8 308 40 HOH HOH . F 5 HOH A 9 309 130 HOH HOH . F 5 HOH A 10 310 57 HOH HOH . F 5 HOH A 11 311 4 HOH HOH . F 5 HOH A 12 312 102 HOH HOH . F 5 HOH A 13 313 28 HOH HOH . F 5 HOH A 14 314 23 HOH HOH . F 5 HOH A 15 315 117 HOH HOH . F 5 HOH A 16 316 9 HOH HOH . F 5 HOH A 17 317 33 HOH HOH . F 5 HOH A 18 318 10 HOH HOH . F 5 HOH A 19 319 32 HOH HOH . F 5 HOH A 20 320 13 HOH HOH . F 5 HOH A 21 321 21 HOH HOH . F 5 HOH A 22 322 106 HOH HOH . F 5 HOH A 23 323 84 HOH HOH . F 5 HOH A 24 324 37 HOH HOH . F 5 HOH A 25 325 56 HOH HOH . F 5 HOH A 26 326 14 HOH HOH . F 5 HOH A 27 327 109 HOH HOH . F 5 HOH A 28 328 19 HOH HOH . F 5 HOH A 29 329 7 HOH HOH . F 5 HOH A 30 330 45 HOH HOH . F 5 HOH A 31 331 22 HOH HOH . F 5 HOH A 32 332 54 HOH HOH . F 5 HOH A 33 333 20 HOH HOH . F 5 HOH A 34 334 31 HOH HOH . F 5 HOH A 35 335 30 HOH HOH . F 5 HOH A 36 336 95 HOH HOH . F 5 HOH A 37 337 11 HOH HOH . F 5 HOH A 38 338 112 HOH HOH . F 5 HOH A 39 339 67 HOH HOH . F 5 HOH A 40 340 1 HOH HOH . F 5 HOH A 41 341 90 HOH HOH . F 5 HOH A 42 342 52 HOH HOH . F 5 HOH A 43 343 72 HOH HOH . F 5 HOH A 44 344 34 HOH HOH . F 5 HOH A 45 345 82 HOH HOH . F 5 HOH A 46 346 39 HOH HOH . F 5 HOH A 47 347 29 HOH HOH . F 5 HOH A 48 348 6 HOH HOH . F 5 HOH A 49 349 35 HOH HOH . F 5 HOH A 50 350 68 HOH HOH . F 5 HOH A 51 351 85 HOH HOH . F 5 HOH A 52 352 74 HOH HOH . F 5 HOH A 53 353 94 HOH HOH . F 5 HOH A 54 354 101 HOH HOH . F 5 HOH A 55 355 41 HOH HOH . F 5 HOH A 56 356 64 HOH HOH . F 5 HOH A 57 357 36 HOH HOH . F 5 HOH A 58 358 27 HOH HOH . F 5 HOH A 59 359 55 HOH HOH . F 5 HOH A 60 360 2 HOH HOH . F 5 HOH A 61 361 86 HOH HOH . F 5 HOH A 62 362 49 HOH HOH . F 5 HOH A 63 363 50 HOH HOH . F 5 HOH A 64 364 18 HOH HOH . F 5 HOH A 65 365 60 HOH HOH . F 5 HOH A 66 366 70 HOH HOH . F 5 HOH A 67 367 119 HOH HOH . F 5 HOH A 68 368 118 HOH HOH . F 5 HOH A 69 369 66 HOH HOH . F 5 HOH A 70 370 69 HOH HOH . F 5 HOH A 71 371 105 HOH HOH . F 5 HOH A 72 372 17 HOH HOH . F 5 HOH A 73 373 76 HOH HOH . F 5 HOH A 74 374 5 HOH HOH . F 5 HOH A 75 375 12 HOH HOH . F 5 HOH A 76 376 58 HOH HOH . F 5 HOH A 77 377 51 HOH HOH . F 5 HOH A 78 378 78 HOH HOH . F 5 HOH A 79 379 44 HOH HOH . F 5 HOH A 80 380 38 HOH HOH . F 5 HOH A 81 381 47 HOH HOH . F 5 HOH A 82 382 26 HOH HOH . F 5 HOH A 83 383 63 HOH HOH . F 5 HOH A 84 384 3 HOH HOH . F 5 HOH A 85 385 92 HOH HOH . F 5 HOH A 86 386 123 HOH HOH . F 5 HOH A 87 387 65 HOH HOH . F 5 HOH A 88 388 80 HOH HOH . F 5 HOH A 89 389 15 HOH HOH . F 5 HOH A 90 390 96 HOH HOH . F 5 HOH A 91 391 59 HOH HOH . F 5 HOH A 92 392 25 HOH HOH . F 5 HOH A 93 393 48 HOH HOH . F 5 HOH A 94 394 61 HOH HOH . F 5 HOH A 95 395 46 HOH HOH . F 5 HOH A 96 396 24 HOH HOH . F 5 HOH A 97 397 111 HOH HOH . F 5 HOH A 98 398 73 HOH HOH . F 5 HOH A 99 399 43 HOH HOH . F 5 HOH A 100 400 16 HOH HOH . F 5 HOH A 101 401 100 HOH HOH . F 5 HOH A 102 402 8 HOH HOH . F 5 HOH A 103 403 53 HOH HOH . F 5 HOH A 104 404 75 HOH HOH . F 5 HOH A 105 405 42 HOH HOH . F 5 HOH A 106 406 91 HOH HOH . F 5 HOH A 107 407 79 HOH HOH . F 5 HOH A 108 408 115 HOH HOH . F 5 HOH A 109 409 103 HOH HOH . F 5 HOH A 110 410 129 HOH HOH . F 5 HOH A 111 411 71 HOH HOH . F 5 HOH A 112 412 83 HOH HOH . F 5 HOH A 113 413 122 HOH HOH . F 5 HOH A 114 414 108 HOH HOH . F 5 HOH A 115 415 104 HOH HOH . F 5 HOH A 116 416 87 HOH HOH . F 5 HOH A 117 417 98 HOH HOH . F 5 HOH A 118 418 89 HOH HOH . F 5 HOH A 119 419 107 HOH HOH . F 5 HOH A 120 420 62 HOH HOH . F 5 HOH A 121 421 128 HOH HOH . F 5 HOH A 122 422 127 HOH HOH . F 5 HOH A 123 423 93 HOH HOH . F 5 HOH A 124 424 88 HOH HOH . F 5 HOH A 125 425 124 HOH HOH . F 5 HOH A 126 426 97 HOH HOH . F 5 HOH A 127 427 113 HOH HOH . F 5 HOH A 128 428 116 HOH HOH . F 5 HOH A 129 429 81 HOH HOH . F 5 HOH A 130 430 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . A . B 2 15.441 3.115 5.095 0.99 11.03 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . A . B 2 13.42 0.063 8.224 0.99 8.68 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . A . B 2 12.978 -3.218 4.688 0.99 8.79 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . A . B 2 14.933 -0.097 1.588 0.99 10.61 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . A . B 2 14.917 2.539 6.217 0.99 8.82 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . A . B 2 14.832 3.215 7.465 0.99 8.35 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . A . B 2 14.289 2.358 8.347 0.99 9.17 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . A . B 2 14.005 1.16 7.651 0.99 8.88 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . A . B 2 13.998 2.567 9.811 0.99 10.95 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . A . B 2 15.233 4.644 7.718 0.99 10.27 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . A . B 2 13.986 5.51 7.945 0.99 10.27 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . A . B 2 13.106 5.532 6.736 0.99 12.21 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . A . B 2 13.58 5.924 5.662 0.99 13.87 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . A . B 2 11.913 5.226 6.869 0.99 13.58 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . A . B 2 13.113 -1.09 7.5 0.99 9.14 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . A . B 2 12.519 -2.228 8.079 0.99 8.36 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . A . B 2 12.41 -3.185 7.111 0.99 9.84 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . A . B 2 12.932 -2.562 5.903 0.99 8.8 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . A . B 2 12.08 -2.333 9.518 0.99 10.15 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . A . B 2 11.906 -4.567 7.174 0.99 12.21 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . A . B 2 12.135 -5.368 8.205 0.99 12.89 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . A . B 2 13.503 -2.675 3.549 0.99 9.19 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . A . B 2 13.709 -3.364 2.345 0.99 9.78 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . A . B 2 14.276 -2.459 1.468 0.99 8.75 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . A . B 2 14.415 -1.231 2.143 0.99 9.26 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . A . B 2 13.367 -4.811 2.101 0.99 12.33 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . A . B 2 14.773 -2.666 0.088 0.99 11.89 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . A . B 2 14.949 -3.836 -0.516 0.99 14.36 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . A . B 2 15.235 1.008 2.348 0.99 10.07 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . A . B 2 15.962 2.139 1.761 0.99 9.79 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . A . B 2 16.101 3.028 2.734 0.99 12.06 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . A . B 2 15.469 2.437 3.905 0.99 10.74 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . A . B 2 16.362 2.286 0.32 0.99 13.48 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . A . B 2 16.831 4.329 2.697 0.99 12.71 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . A . B 2 18.29 4.025 3.023 0.99 15.65 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . A . B 2 19.135 5.266 2.962 0.99 20.78 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . A . B 2 19.588 5.762 4.009 0.99 24.73 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . A . B 2 19.346 5.815 1.869 0.99 24.92 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . A . B 2 14.396 1.271 6.344 0.99 8.48 ? NA HEM 201 A 1 HETATM 40 N NB HEM . A . B 2 13.331 -1.335 6.207 0.99 8.76 ? NB HEM 201 A 1 HETATM 41 N NC HEM . A . B 2 13.914 -1.401 3.408 0.99 8.74 ? NC HEM 201 A 1 HETATM 42 N ND HEM . A . B 2 14.946 1.224 3.648 0.99 10.6 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . A . B 2 14.155 -0.018 4.881 0.99 8.8 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #