data_8BLO # _model_server_result.job_id QTXexZLa6KI3pKUE0q3QZw _model_server_result.datetime_utc '2024-12-26 20:50:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8blo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1003}' # _entry.id 8BLO # _exptl.entry_id 8BLO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 875.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'di-heneicosanoyl phosphatidyl choline' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BLO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BLO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 T N N ? 2 U N N ? 2 V N N # _chem_comp.formula 'C50 H101 N O8 P 1' _chem_comp.formula_weight 875.313 _chem_comp.id PLD _chem_comp.mon_nstd_flag . _chem_comp.name 'di-heneicosanoyl phosphatidyl choline' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLD sing 420 n n C1 O3P PLD sing 421 n n C1 H11 PLD sing 422 n n C1 H12 PLD sing 423 n n C2 C3 PLD sing 424 n n C2 O2 PLD sing 425 n n C2 H2 PLD sing 426 n n C3 O3 PLD sing 427 n n C3 H31 PLD sing 428 n n C3 H32 PLD sing 429 n n C4 C5 PLD sing 430 n n C4 O4P PLD sing 431 n n C4 H41 PLD sing 432 n n C4 H42 PLD sing 433 n n C5 N PLD sing 434 n n C5 H51 PLD sing 435 n n C5 H52 PLD sing 436 n n C6 N PLD sing 437 n n C6 H61 PLD sing 438 n n C6 H62 PLD sing 439 n n C6 H63 PLD sing 440 n n C7 N PLD sing 441 n n C7 H71 PLD sing 442 n n C7 H72 PLD sing 443 n n C7 H73 PLD sing 444 n n C8 N PLD sing 445 n n C8 H81 PLD sing 446 n n C8 H82 PLD sing 447 n n C8 H83 PLD sing 448 n n C' C1' PLD sing 449 n n C' O' PLD doub 450 n n C' O2 PLD sing 451 n n C1' C2' PLD sing 452 n n C1' "H1'1" PLD sing 453 n n C1' "H1'2" PLD sing 454 n n C2' C3' PLD sing 455 n n C2' "H2'1" PLD sing 456 n n C2' "H2'2" PLD sing 457 n n C3' C4' PLD sing 458 n n C3' "H3'1" PLD sing 459 n n C3' "H3'2" PLD sing 460 n n C4' C5' PLD sing 461 n n C4' "H4'1" PLD sing 462 n n C4' "H4'2" PLD sing 463 n n C5' C6' PLD sing 464 n n C5' "H5'1" PLD sing 465 n n C5' "H5'2" PLD sing 466 n n C6' C7' PLD sing 467 n n C6' "H6'1" PLD sing 468 n n C6' "H6'2" PLD sing 469 n n C7' C8' PLD sing 470 n n C7' "H7'1" PLD sing 471 n n C7' "H7'2" PLD sing 472 n n C8' C9' PLD sing 473 n n C8' "H8'1" PLD sing 474 n n C8' "H8'2" PLD sing 475 n n C9' CA' PLD sing 476 n n C9' "H9'1" PLD sing 477 n n C9' "H9'2" PLD sing 478 n n CA' CB' PLD sing 479 n n CA' "HT'1" PLD sing 480 n n CA' "HT'2" PLD sing 481 n n CB' CC' PLD sing 482 n n CB' "HE'1" PLD sing 483 n n CB' "HE'2" PLD sing 484 n n CB C1B PLD sing 485 n n CB OB PLD doub 486 n n CB O3 PLD sing 487 n n C1B C2B PLD sing 488 n n C1B H1A1 PLD sing 489 n n C1B H1A2 PLD sing 490 n n C2B C3B PLD sing 491 n n C2B H2A1 PLD sing 492 n n C2B H2A2 PLD sing 493 n n C3B C4B PLD sing 494 n n C3B H3A1 PLD sing 495 n n C3B H3A2 PLD sing 496 n n C4B C5B PLD sing 497 n n C4B H4A1 PLD sing 498 n n C4B H4A2 PLD sing 499 n n C5B C6B PLD sing 500 n n C5B H5A1 PLD sing 501 n n C5B H5A2 PLD sing 502 n n C6B C7B PLD sing 503 n n C6B H6A1 PLD sing 504 n n C6B H6A2 PLD sing 505 n n C7B C8B PLD sing 506 n n C7B H7A1 PLD sing 507 n n C7B H7A2 PLD sing 508 n n C8B C9B PLD sing 509 n n C8B H8A1 PLD sing 510 n n C8B H8A2 PLD sing 511 n n C9B CAA PLD sing 512 n n C9B H9A1 PLD sing 513 n n C9B H9A2 PLD sing 514 n n CAA CBA PLD sing 515 n n CAA HTA1 PLD sing 516 n n CAA HTA2 PLD sing 517 n n CBA CCA PLD sing 518 n n CBA HEA1 PLD sing 519 n n CBA HEA2 PLD sing 520 n n O1P P PLD doub 521 n n O2P P PLD sing 522 n n O2P HOP2 PLD sing 523 n n O3P P PLD sing 524 n n O4P P PLD sing 525 n n CC' CD' PLD sing 526 n n CC' "HA'1" PLD sing 527 n n CC' "HA'2" PLD sing 528 n n CD' CE' PLD sing 529 n n CD' "HB'1" PLD sing 530 n n CD' "HB'2" PLD sing 531 n n CE' CF' PLD sing 532 n n CE' "HC'1" PLD sing 533 n n CE' "HC'2" PLD sing 534 n n CF' CG' PLD sing 535 n n CF' "HD'1" PLD sing 536 n n CF' "HD'2" PLD sing 537 n n CG' CH' PLD sing 538 n n CG' "HF'1" PLD sing 539 n n CG' "HF'2" PLD sing 540 n n CH' CI' PLD sing 541 n n CH' "HG'1" PLD sing 542 n n CH' "HG'2" PLD sing 543 n n CI' CJ' PLD sing 544 n n CI' "HH'1" PLD sing 545 n n CI' "HH'2" PLD sing 546 n n CJ' CK' PLD sing 547 n n CJ' "HI'1" PLD sing 548 n n CJ' "HI'2" PLD sing 549 n n CK' "HJ'1" PLD sing 550 n n CK' "HJ'2" PLD sing 551 n n CK' "HJ'3" PLD sing 552 n n CCA CDA PLD sing 553 n n CCA HAA1 PLD sing 554 n n CCA HAA2 PLD sing 555 n n CDA CEA PLD sing 556 n n CDA HBA1 PLD sing 557 n n CDA HBA2 PLD sing 558 n n CEA CFA PLD sing 559 n n CEA HCA1 PLD sing 560 n n CEA HCA2 PLD sing 561 n n CFA CGA PLD sing 562 n n CFA HDA1 PLD sing 563 n n CFA HDA2 PLD sing 564 n n CGA CHA PLD sing 565 n n CGA HFA1 PLD sing 566 n n CGA HFA2 PLD sing 567 n n CHA CIA PLD sing 568 n n CHA HGA1 PLD sing 569 n n CHA HGA2 PLD sing 570 n n CIA CJA PLD sing 571 n n CIA HHA1 PLD sing 572 n n CIA HHA2 PLD sing 573 n n CJA CKA PLD sing 574 n n CJA HIA1 PLD sing 575 n n CJA HIA2 PLD sing 576 n n CKA HJA1 PLD sing 577 n n CKA HJA2 PLD sing 578 n n CKA HJA3 PLD sing 579 n n # _atom_sites.entry_id 8BLO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PLD A 1 1001 501 PLD PLD . E 2 PLD A 1 1002 502 PLD PLD . F 2 PLD A 1 1003 503 PLD PLD . G 3 LMN A 1 1004 504 LMN LMN . H 3 LMN A 1 1005 505 LMN LMN . I 3 LMN A 1 1006 506 LMN LMN . J 3 LMN A 1 1007 507 LMN LMN . K 3 LMN A 1 1008 508 LMN LMN . L 2 PLD C 1 1001 501 PLD PLD . M 2 PLD C 1 1002 502 PLD PLD . N 2 PLD C 1 1003 503 PLD PLD . O 3 LMN C 1 1004 504 LMN LMN . P 3 LMN C 1 1005 505 LMN LMN . Q 3 LMN C 1 1006 506 LMN LMN . R 3 LMN C 1 1007 507 LMN LMN . S 3 LMN C 1 1008 508 LMN LMN . T 2 PLD B 1 1001 501 PLD PLD . U 2 PLD B 1 1002 502 PLD PLD . V 2 PLD B 1 1003 503 PLD PLD . W 3 LMN B 1 1004 504 LMN LMN . X 3 LMN B 1 1005 505 LMN LMN . Y 3 LMN B 1 1006 506 LMN LMN . Z 3 LMN B 1 1007 507 LMN LMN . AA 3 LMN B 1 1008 508 LMN LMN . BA 4 HOH A 1 1101 601 HOH HOH . BA 4 HOH A 2 1102 602 HOH HOH . BA 4 HOH A 3 1103 605 HOH HOH . BA 4 HOH A 4 1104 604 HOH HOH . BA 4 HOH A 5 1105 603 HOH HOH . BA 4 HOH A 6 1106 606 HOH HOH . CA 4 HOH C 1 1101 601 HOH HOH . CA 4 HOH C 2 1102 602 HOH HOH . CA 4 HOH C 3 1103 605 HOH HOH . CA 4 HOH C 4 1104 604 HOH HOH . CA 4 HOH C 5 1105 603 HOH HOH . CA 4 HOH C 6 1106 606 HOH HOH . DA 4 HOH B 1 1101 601 HOH HOH . DA 4 HOH B 2 1102 602 HOH HOH . DA 4 HOH B 3 1103 605 HOH HOH . DA 4 HOH B 4 1104 604 HOH HOH . DA 4 HOH B 5 1105 603 HOH HOH . DA 4 HOH B 6 1106 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C' PLD . . . V 2 151.105 147.582 107.867 1 59.88 ? C' PLD 1003 B 1 HETATM 2 C C1' PLD . . . V 2 152.193 147.515 108.963 1 59.88 ? C1' PLD 1003 B 1 HETATM 3 C C2' PLD . . . V 2 152.559 146.037 109.236 1 59.88 ? C2' PLD 1003 B 1 HETATM 4 C C3' PLD . . . V 2 153.517 145.957 110.461 1 59.88 ? C3' PLD 1003 B 1 HETATM 5 C C4' PLD . . . V 2 152.796 146.498 111.719 1 59.88 ? C4' PLD 1003 B 1 HETATM 6 C C5' PLD . . . V 2 153.06 145.534 112.916 1 59.88 ? C5' PLD 1003 B 1 HETATM 7 C C6' PLD . . . V 2 153.607 146.338 114.123 1 59.88 ? C6' PLD 1003 B 1 HETATM 8 C C7' PLD . . . V 2 152.707 146.081 115.368 1 59.88 ? C7' PLD 1003 B 1 HETATM 9 C C8' PLD . . . V 2 153.467 145.167 116.369 1 59.88 ? C8' PLD 1003 B 1 HETATM 10 C C9' PLD . . . V 2 153.769 145.952 117.682 1 59.88 ? C9' PLD 1003 B 1 HETATM 11 C CA' PLD . . . V 2 154.173 144.943 118.796 1 59.88 ? CA' PLD 1003 B 1 HETATM 12 C CB' PLD . . . V 2 153.337 145.212 120.088 1 59.88 ? CB' PLD 1003 B 1 HETATM 13 O O' PLD . . . V 2 150.725 146.577 107.339 1 59.88 ? O' PLD 1003 B 1 HETATM 14 O O2 PLD . . . V 2 150.562 148.823 107.491 1 59.88 ? O2 PLD 1003 B 1 HETATM 15 C CC' PLD . . . V 2 154.297 145.612 121.26 1 59.88 ? CC' PLD 1003 B 1 HETATM 16 C CD' PLD . . . V 2 153.45 145.976 122.524 1 59.88 ? CD' PLD 1003 B 1 HETATM 17 C CE' PLD . . . V 2 154.403 146.252 123.751 1 59.88 ? CE' PLD 1003 B 1 HETATM 18 C CF' PLD . . . V 2 154.15 145.178 124.863 1 59.88 ? CF' PLD 1003 B 1 HETATM 19 C CG' PLD . . . V 2 155.156 145.41 126.057 1 59.88 ? CG' PLD 1003 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #