data_8BMS # _model_server_result.job_id ZclTeOE-NkS1PcrkfTOWag _model_server_result.datetime_utc '2025-02-05 12:45:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8BMS # _exptl.entry_id 8BMS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BMS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 47 A SER 47 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A OE1 GLN 91 A GLN 91 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc3 D O1G ATP . A ATP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc4 D O2B ATP . A ATP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc5 D O3B ATP . A ATP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc6 B OG SER 47 B SER 47 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc7 B OE1 GLN 92 B GLN 92 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 F O3G ATP . B ATP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc9 F O2B ATP . B ATP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8BMS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP A 1 301 301 ATP ATP . E 5 MG A 1 302 302 MG MG . F 4 ATP B 1 301 301 ATP ATP . G 5 MG B 1 302 302 MG MG . H 6 HOH A 1 401 32 HOH HOH . H 6 HOH A 2 402 18 HOH HOH . H 6 HOH A 3 403 13 HOH HOH . H 6 HOH A 4 404 33 HOH HOH . H 6 HOH A 5 405 6 HOH HOH . H 6 HOH A 6 406 26 HOH HOH . H 6 HOH A 7 407 29 HOH HOH . H 6 HOH A 8 408 36 HOH HOH . H 6 HOH A 9 409 15 HOH HOH . H 6 HOH A 10 410 23 HOH HOH . H 6 HOH A 11 411 27 HOH HOH . H 6 HOH A 12 412 17 HOH HOH . H 6 HOH A 13 413 8 HOH HOH . H 6 HOH A 14 414 9 HOH HOH . H 6 HOH A 15 415 3 HOH HOH . H 6 HOH A 16 416 30 HOH HOH . H 6 HOH A 17 417 12 HOH HOH . H 6 HOH A 18 418 22 HOH HOH . H 6 HOH A 19 419 34 HOH HOH . H 6 HOH A 20 420 4 HOH HOH . H 6 HOH A 21 421 10 HOH HOH . H 6 HOH A 22 422 19 HOH HOH . H 6 HOH A 23 423 25 HOH HOH . H 6 HOH A 24 424 11 HOH HOH . H 6 HOH A 25 425 16 HOH HOH . H 6 HOH A 26 426 7 HOH HOH . H 6 HOH A 27 427 20 HOH HOH . H 6 HOH A 28 428 28 HOH HOH . H 6 HOH A 29 429 21 HOH HOH . H 6 HOH A 30 430 5 HOH HOH . H 6 HOH A 31 431 31 HOH HOH . H 6 HOH A 32 432 14 HOH HOH . H 6 HOH A 33 433 24 HOH HOH . H 6 HOH A 34 434 2 HOH HOH . H 6 HOH A 35 435 35 HOH HOH . I 6 HOH B 1 401 47 HOH HOH . I 6 HOH B 2 402 63 HOH HOH . I 6 HOH B 3 403 41 HOH HOH . I 6 HOH B 4 404 43 HOH HOH . I 6 HOH B 5 405 53 HOH HOH . I 6 HOH B 6 406 57 HOH HOH . I 6 HOH B 7 407 45 HOH HOH . I 6 HOH B 8 408 40 HOH HOH . I 6 HOH B 9 409 55 HOH HOH . I 6 HOH B 10 410 37 HOH HOH . I 6 HOH B 11 411 65 HOH HOH . I 6 HOH B 12 412 52 HOH HOH . I 6 HOH B 13 413 49 HOH HOH . I 6 HOH B 14 414 62 HOH HOH . I 6 HOH B 15 415 39 HOH HOH . I 6 HOH B 16 416 60 HOH HOH . I 6 HOH B 17 417 54 HOH HOH . I 6 HOH B 18 418 58 HOH HOH . I 6 HOH B 19 419 51 HOH HOH . I 6 HOH B 20 420 38 HOH HOH . I 6 HOH B 21 421 61 HOH HOH . I 6 HOH B 22 422 56 HOH HOH . I 6 HOH B 23 423 50 HOH HOH . I 6 HOH B 24 424 42 HOH HOH . I 6 HOH B 25 425 48 HOH HOH . I 6 HOH B 26 426 44 HOH HOH . I 6 HOH B 27 427 46 HOH HOH . I 6 HOH B 28 428 59 HOH HOH . J 6 HOH C 1 301 70 HOH HOH . J 6 HOH C 2 302 66 HOH HOH . J 6 HOH C 3 303 68 HOH HOH . J 6 HOH C 4 304 64 HOH HOH . J 6 HOH C 5 305 67 HOH HOH . J 6 HOH C 6 306 69 HOH HOH . J 6 HOH C 7 307 72 HOH HOH . J 6 HOH C 8 308 71 HOH HOH . J 6 HOH C 9 309 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 168.86 162.191 131.562 1 17.68 ? PG ATP 301 A 1 HETATM 2 O O1G ATP . . . D 4 167.852 162.287 132.653 1 29.21 ? O1G ATP 301 A 1 HETATM 3 O O2G ATP . . . D 4 169.453 160.799 131.4 1 27.39 ? O2G ATP 301 A 1 HETATM 4 O O3G ATP . . . D 4 168.346 162.676 130.209 1 26.11 ? O3G ATP 301 A 1 HETATM 5 P PB ATP . . . D 4 170.655 164.566 131.529 1 18.5 ? PB ATP 301 A 1 HETATM 6 O O1B ATP . . . D 4 170.412 164.877 130.113 1 22.7 ? O1B ATP 301 A 1 HETATM 7 O O2B ATP . . . D 4 170.038 165.526 132.539 1 36.3 ? O2B ATP 301 A 1 HETATM 8 O O3B ATP . . . D 4 170.112 163.123 131.871 1 18.01 ? O3B ATP 301 A 1 HETATM 9 P PA ATP . . . D 4 173.149 164.676 133.137 1 11.42 ? PA ATP 301 A 1 HETATM 10 O O1A ATP . . . D 4 172.528 164.207 134.391 1 13.6 ? O1A ATP 301 A 1 HETATM 11 O O2A ATP . . . D 4 173.55 166.145 133.129 1 26.85 ? O2A ATP 301 A 1 HETATM 12 O O3A ATP . . . D 4 172.204 164.43 131.871 1 16.45 ? O3A ATP 301 A 1 HETATM 13 O O5' ATP . . . D 4 174.434 163.825 132.798 1 28.6 ? O5' ATP 301 A 1 HETATM 14 C C5' ATP . . . D 4 175.633 164.445 132.288 1 12.92 ? C5' ATP 301 A 1 HETATM 15 C C4' ATP . . . D 4 176.817 163.525 132.482 1 15.43 ? C4' ATP 301 A 1 HETATM 16 O O4' ATP . . . D 4 177.299 163.625 133.84 1 28.66 ? O4' ATP 301 A 1 HETATM 17 C C3' ATP . . . D 4 176.565 162.039 132.232 1 27.06 ? C3' ATP 301 A 1 HETATM 18 O O3' ATP . . . D 4 177.702 161.424 131.638 1 30.51 ? O3' ATP 301 A 1 HETATM 19 C C2' ATP . . . D 4 176.296 161.498 133.638 1 23.85 ? C2' ATP 301 A 1 HETATM 20 O O2' ATP . . . D 4 176.65 160.124 133.751 1 28.79 ? O2' ATP 301 A 1 HETATM 21 C C1' ATP . . . D 4 177.222 162.369 134.487 1 16.45 ? C1' ATP 301 A 1 HETATM 22 N N9 ATP . . . D 4 176.744 162.588 135.846 1 8.63 ? N9 ATP 301 A 1 HETATM 23 C C8 ATP . . . D 4 175.477 162.945 136.226 1 17.24 ? C8 ATP 301 A 1 HETATM 24 N N7 ATP . . . D 4 175.323 163.077 137.52 1 23.04 ? N7 ATP 301 A 1 HETATM 25 C C5 ATP . . . D 4 176.58 162.789 138.03 1 21.59 ? C5 ATP 301 A 1 HETATM 26 C C6 ATP . . . D 4 177.086 162.753 139.343 1 18.53 ? C6 ATP 301 A 1 HETATM 27 N N6 ATP . . . D 4 176.356 163.02 140.43 1 22.68 ? N6 ATP 301 A 1 HETATM 28 N N1 ATP . . . D 4 178.388 162.428 139.506 1 20.43 ? N1 ATP 301 A 1 HETATM 29 C C2 ATP . . . D 4 179.123 162.16 138.424 1 19.26 ? C2 ATP 301 A 1 HETATM 30 N N3 ATP . . . D 4 178.756 162.163 137.141 1 23.68 ? N3 ATP 301 A 1 HETATM 31 C C4 ATP . . . D 4 177.465 162.486 137.01 1 23.18 ? C4 ATP 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #