data_8BMS # _model_server_result.job_id cF4V4PAVNYRDrtxkjgYuzg _model_server_result.datetime_utc '2025-02-05 12:41:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8BMS # _exptl.entry_id 8BMS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BMS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 47 A SER 47 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A OE1 GLN 91 A GLN 91 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc3 D O1G ATP . A ATP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc4 D O2B ATP . A ATP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc5 D O3B ATP . A ATP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc6 B OG SER 47 B SER 47 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc7 B OE1 GLN 92 B GLN 92 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc8 F O3G ATP . B ATP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc9 F O2B ATP . B ATP 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8BMS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP A 1 301 301 ATP ATP . E 5 MG A 1 302 302 MG MG . F 4 ATP B 1 301 301 ATP ATP . G 5 MG B 1 302 302 MG MG . H 6 HOH A 1 401 32 HOH HOH . H 6 HOH A 2 402 18 HOH HOH . H 6 HOH A 3 403 13 HOH HOH . H 6 HOH A 4 404 33 HOH HOH . H 6 HOH A 5 405 6 HOH HOH . H 6 HOH A 6 406 26 HOH HOH . H 6 HOH A 7 407 29 HOH HOH . H 6 HOH A 8 408 36 HOH HOH . H 6 HOH A 9 409 15 HOH HOH . H 6 HOH A 10 410 23 HOH HOH . H 6 HOH A 11 411 27 HOH HOH . H 6 HOH A 12 412 17 HOH HOH . H 6 HOH A 13 413 8 HOH HOH . H 6 HOH A 14 414 9 HOH HOH . H 6 HOH A 15 415 3 HOH HOH . H 6 HOH A 16 416 30 HOH HOH . H 6 HOH A 17 417 12 HOH HOH . H 6 HOH A 18 418 22 HOH HOH . H 6 HOH A 19 419 34 HOH HOH . H 6 HOH A 20 420 4 HOH HOH . H 6 HOH A 21 421 10 HOH HOH . H 6 HOH A 22 422 19 HOH HOH . H 6 HOH A 23 423 25 HOH HOH . H 6 HOH A 24 424 11 HOH HOH . H 6 HOH A 25 425 16 HOH HOH . H 6 HOH A 26 426 7 HOH HOH . H 6 HOH A 27 427 20 HOH HOH . H 6 HOH A 28 428 28 HOH HOH . H 6 HOH A 29 429 21 HOH HOH . H 6 HOH A 30 430 5 HOH HOH . H 6 HOH A 31 431 31 HOH HOH . H 6 HOH A 32 432 14 HOH HOH . H 6 HOH A 33 433 24 HOH HOH . H 6 HOH A 34 434 2 HOH HOH . H 6 HOH A 35 435 35 HOH HOH . I 6 HOH B 1 401 47 HOH HOH . I 6 HOH B 2 402 63 HOH HOH . I 6 HOH B 3 403 41 HOH HOH . I 6 HOH B 4 404 43 HOH HOH . I 6 HOH B 5 405 53 HOH HOH . I 6 HOH B 6 406 57 HOH HOH . I 6 HOH B 7 407 45 HOH HOH . I 6 HOH B 8 408 40 HOH HOH . I 6 HOH B 9 409 55 HOH HOH . I 6 HOH B 10 410 37 HOH HOH . I 6 HOH B 11 411 65 HOH HOH . I 6 HOH B 12 412 52 HOH HOH . I 6 HOH B 13 413 49 HOH HOH . I 6 HOH B 14 414 62 HOH HOH . I 6 HOH B 15 415 39 HOH HOH . I 6 HOH B 16 416 60 HOH HOH . I 6 HOH B 17 417 54 HOH HOH . I 6 HOH B 18 418 58 HOH HOH . I 6 HOH B 19 419 51 HOH HOH . I 6 HOH B 20 420 38 HOH HOH . I 6 HOH B 21 421 61 HOH HOH . I 6 HOH B 22 422 56 HOH HOH . I 6 HOH B 23 423 50 HOH HOH . I 6 HOH B 24 424 42 HOH HOH . I 6 HOH B 25 425 48 HOH HOH . I 6 HOH B 26 426 44 HOH HOH . I 6 HOH B 27 427 46 HOH HOH . I 6 HOH B 28 428 59 HOH HOH . J 6 HOH C 1 301 70 HOH HOH . J 6 HOH C 2 302 66 HOH HOH . J 6 HOH C 3 303 68 HOH HOH . J 6 HOH C 4 304 64 HOH HOH . J 6 HOH C 5 305 67 HOH HOH . J 6 HOH C 6 306 69 HOH HOH . J 6 HOH C 7 307 72 HOH HOH . J 6 HOH C 8 308 71 HOH HOH . J 6 HOH C 9 309 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 4 151.258 158.371 139.612 1 24.07 ? PG ATP 301 B 1 HETATM 2 O O1G ATP . . . F 4 151.317 159.804 140.009 1 31.62 ? O1G ATP 301 B 1 HETATM 3 O O2G ATP . . . F 4 150.785 158.152 138.178 1 24.92 ? O2G ATP 301 B 1 HETATM 4 O O3G ATP . . . F 4 152.57 157.621 139.828 1 26.68 ? O3G ATP 301 B 1 HETATM 5 P PB ATP . . . F 4 149.85 156.107 140.965 1 11.16 ? PB ATP 301 B 1 HETATM 6 O O1B ATP . . . F 4 148.725 155.552 140.196 1 19.74 ? O1B ATP 301 B 1 HETATM 7 O O2B ATP . . . F 4 151.146 155.306 140.91 1 31.94 ? O2B ATP 301 B 1 HETATM 8 O O3B ATP . . . F 4 150.197 157.586 140.51 1 32.24 ? O3B ATP 301 B 1 HETATM 9 P PA ATP . . . F 4 149.879 155.647 143.889 1 19.2 ? PA ATP 301 B 1 HETATM 10 O O1A ATP . . . F 4 151.318 155.79 144.184 1 28.16 ? O1A ATP 301 B 1 HETATM 11 O O2A ATP . . . F 4 149.37 154.212 143.865 1 28 ? O2A ATP 301 B 1 HETATM 12 O O3A ATP . . . F 4 149.487 156.316 142.5 1 12.24 ? O3A ATP 301 B 1 HETATM 13 O O5' ATP . . . F 4 149.013 156.453 144.933 1 37.59 ? O5' ATP 301 B 1 HETATM 14 C C5' ATP . . . F 4 147.601 156.201 145.095 1 26.27 ? C5' ATP 301 B 1 HETATM 15 C C4' ATP . . . F 4 147.045 157.105 146.169 1 24.44 ? C4' ATP 301 B 1 HETATM 16 O O4' ATP . . . F 4 147.664 156.795 147.437 1 29.21 ? O4' ATP 301 B 1 HETATM 17 C C3' ATP . . . F 4 147.25 158.603 145.951 1 25.53 ? C3' ATP 301 B 1 HETATM 18 O O3' ATP . . . F 4 146.132 159.352 146.41 1 32.2 ? O3' ATP 301 B 1 HETATM 19 C C2' ATP . . . F 4 148.509 158.897 146.77 1 25.34 ? C2' ATP 301 B 1 HETATM 20 O O2' ATP . . . F 4 148.537 160.241 147.235 1 32.01 ? O2' ATP 301 B 1 HETATM 21 C C1' ATP . . . F 4 148.349 157.927 147.941 1 22.98 ? C1' ATP 301 B 1 HETATM 22 N N9 ATP . . . F 4 149.613 157.478 148.511 1 19.87 ? N9 ATP 301 B 1 HETATM 23 C C8 ATP . . . F 4 150.699 156.996 147.829 1 23.51 ? C8 ATP 301 B 1 HETATM 24 N N7 ATP . . . F 4 151.708 156.662 148.595 1 28.77 ? N7 ATP 301 B 1 HETATM 25 C C5 ATP . . . F 4 151.254 156.944 149.875 1 23.38 ? C5 ATP 301 B 1 HETATM 26 C C6 ATP . . . F 4 151.849 156.813 151.144 1 31.31 ? C6 ATP 301 B 1 HETATM 27 N N6 ATP . . . F 4 153.084 156.343 151.341 1 33.69 ? N6 ATP 301 B 1 HETATM 28 N N1 ATP . . . F 4 151.121 157.184 152.221 1 24.37 ? N1 ATP 301 B 1 HETATM 29 C C2 ATP . . . F 4 149.886 157.655 152.03 1 22.91 ? C2 ATP 301 B 1 HETATM 30 N N3 ATP . . . F 4 149.222 157.823 150.885 1 25.87 ? N3 ATP 301 B 1 HETATM 31 C C4 ATP . . . F 4 149.964 157.447 149.838 1 26.46 ? C4 ATP 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #