data_8BN5 # _model_server_result.job_id drQtPoAOSPZezDXr4DssHQ _model_server_result.datetime_utc '2024-11-23 03:37:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":902}' # _entry.id 8BN5 # _exptl.entry_id 8BN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BN5 _cell.length_a 45.838 _cell.length_b 66.967 _cell.length_c 175.413 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 756 1_555 A SG CYS 262 A CYS 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 B SG CYS 207 B CYS 756 1_555 B SG CYS 262 B CYS 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 63 A ASN 498 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A O GLU 92 A GLU 527 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 A OE2 GLU 92 A GLU 527 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A O VAL 95 A VAL 530 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc4 A OD1 ASP 96 A ASP 531 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 C CA CA . A CA 901 1_555 N O HOH . A HOH 1038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc6 C CA CA . A CA 901 1_555 N O HOH . A HOH 1058 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc7 C CA CA . A CA 901 1_555 O O HOH . B HOH 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc8 N O HOH . A HOH 1001 1_555 J CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc9 N O HOH . A HOH 1107 1_555 J CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc10 B O GLU 92 B GLU 527 1_555 I CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc11 B OE2 GLU 92 B GLU 527 1_555 I CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc12 B O VAL 95 B VAL 530 1_555 I CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc13 B OD1 ASP 96 B ASP 531 1_555 I CA CA . B CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc14 B OD2 ASP 233 B ASP 782 1_555 J CA CA . B CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc15 I CA CA . B CA 901 1_555 O O HOH . B HOH 1038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc16 I CA CA . B CA 901 1_555 O O HOH . B HOH 1060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc17 I CA CA . B CA 901 1_555 O O HOH . B HOH 1075 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc18 J CA CA . B CA 902 1_555 O O HOH . B HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BN5 _atom_sites.fract_transf_matrix[1][1] 0.021816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 901 2 CA CA . D 3 CL A 1 902 1 CL CL . E 4 NAG A 1 903 1 NAG NAG . F 5 ABU A 1 904 2 ABU ABU . G 6 EDO A 1 905 4 EDO EDO . H 6 EDO A 1 906 6 EDO EDO . I 2 CA B 1 901 1 CA CA . J 2 CA B 1 902 3 CA CA . K 3 CL B 1 903 2 CL CL . L 5 ABU B 1 904 3 ABU ABU . M 6 EDO B 1 905 5 EDO EDO . N 7 HOH A 1 1001 153 HOH HOH . N 7 HOH A 2 1002 195 HOH HOH . N 7 HOH A 3 1003 208 HOH HOH . N 7 HOH A 4 1004 212 HOH HOH . N 7 HOH A 5 1005 84 HOH HOH . N 7 HOH A 6 1006 7 HOH HOH . N 7 HOH A 7 1007 119 HOH HOH . N 7 HOH A 8 1008 13 HOH HOH . N 7 HOH A 9 1009 197 HOH HOH . N 7 HOH A 10 1010 157 HOH HOH . N 7 HOH A 11 1011 25 HOH HOH . N 7 HOH A 12 1012 214 HOH HOH . N 7 HOH A 13 1013 12 HOH HOH . N 7 HOH A 14 1014 173 HOH HOH . N 7 HOH A 15 1015 56 HOH HOH . N 7 HOH A 16 1016 46 HOH HOH . N 7 HOH A 17 1017 121 HOH HOH . N 7 HOH A 18 1018 124 HOH HOH . N 7 HOH A 19 1019 209 HOH HOH . N 7 HOH A 20 1020 14 HOH HOH . N 7 HOH A 21 1021 31 HOH HOH . N 7 HOH A 22 1022 130 HOH HOH . N 7 HOH A 23 1023 64 HOH HOH . N 7 HOH A 24 1024 85 HOH HOH . N 7 HOH A 25 1025 164 HOH HOH . N 7 HOH A 26 1026 45 HOH HOH . N 7 HOH A 27 1027 183 HOH HOH . N 7 HOH A 28 1028 128 HOH HOH . N 7 HOH A 29 1029 170 HOH HOH . N 7 HOH A 30 1030 62 HOH HOH . N 7 HOH A 31 1031 61 HOH HOH . N 7 HOH A 32 1032 22 HOH HOH . N 7 HOH A 33 1033 133 HOH HOH . N 7 HOH A 34 1034 66 HOH HOH . N 7 HOH A 35 1035 95 HOH HOH . N 7 HOH A 36 1036 131 HOH HOH . N 7 HOH A 37 1037 108 HOH HOH . N 7 HOH A 38 1038 4 HOH HOH . N 7 HOH A 39 1039 10 HOH HOH . N 7 HOH A 40 1040 21 HOH HOH . N 7 HOH A 41 1041 37 HOH HOH . N 7 HOH A 42 1042 120 HOH HOH . N 7 HOH A 43 1043 50 HOH HOH . N 7 HOH A 44 1044 71 HOH HOH . N 7 HOH A 45 1045 91 HOH HOH . N 7 HOH A 46 1046 82 HOH HOH . N 7 HOH A 47 1047 74 HOH HOH . N 7 HOH A 48 1048 210 HOH HOH . N 7 HOH A 49 1049 98 HOH HOH . N 7 HOH A 50 1050 129 HOH HOH . N 7 HOH A 51 1051 106 HOH HOH . N 7 HOH A 52 1052 44 HOH HOH . N 7 HOH A 53 1053 184 HOH HOH . N 7 HOH A 54 1054 65 HOH HOH . N 7 HOH A 55 1055 135 HOH HOH . N 7 HOH A 56 1056 43 HOH HOH . N 7 HOH A 57 1057 17 HOH HOH . N 7 HOH A 58 1058 5 HOH HOH . N 7 HOH A 59 1059 107 HOH HOH . N 7 HOH A 60 1060 3 HOH HOH . N 7 HOH A 61 1061 57 HOH HOH . N 7 HOH A 62 1062 101 HOH HOH . N 7 HOH A 63 1063 96 HOH HOH . N 7 HOH A 64 1064 125 HOH HOH . N 7 HOH A 65 1065 35 HOH HOH . N 7 HOH A 66 1066 143 HOH HOH . N 7 HOH A 67 1067 211 HOH HOH . N 7 HOH A 68 1068 200 HOH HOH . N 7 HOH A 69 1069 42 HOH HOH . N 7 HOH A 70 1070 72 HOH HOH . N 7 HOH A 71 1071 67 HOH HOH . N 7 HOH A 72 1072 169 HOH HOH . N 7 HOH A 73 1073 127 HOH HOH . N 7 HOH A 74 1074 9 HOH HOH . N 7 HOH A 75 1075 75 HOH HOH . N 7 HOH A 76 1076 213 HOH HOH . N 7 HOH A 77 1077 179 HOH HOH . N 7 HOH A 78 1078 19 HOH HOH . N 7 HOH A 79 1079 158 HOH HOH . N 7 HOH A 80 1080 187 HOH HOH . N 7 HOH A 81 1081 94 HOH HOH . N 7 HOH A 82 1082 47 HOH HOH . N 7 HOH A 83 1083 123 HOH HOH . N 7 HOH A 84 1084 146 HOH HOH . N 7 HOH A 85 1085 33 HOH HOH . N 7 HOH A 86 1086 196 HOH HOH . N 7 HOH A 87 1087 73 HOH HOH . N 7 HOH A 88 1088 225 HOH HOH . N 7 HOH A 89 1089 29 HOH HOH . N 7 HOH A 90 1090 201 HOH HOH . N 7 HOH A 91 1091 198 HOH HOH . N 7 HOH A 92 1092 86 HOH HOH . N 7 HOH A 93 1093 20 HOH HOH . N 7 HOH A 94 1094 63 HOH HOH . N 7 HOH A 95 1095 156 HOH HOH . N 7 HOH A 96 1096 136 HOH HOH . N 7 HOH A 97 1097 60 HOH HOH . N 7 HOH A 98 1098 148 HOH HOH . N 7 HOH A 99 1099 159 HOH HOH . N 7 HOH A 100 1100 132 HOH HOH . N 7 HOH A 101 1101 176 HOH HOH . N 7 HOH A 102 1102 161 HOH HOH . N 7 HOH A 103 1103 105 HOH HOH . N 7 HOH A 104 1104 199 HOH HOH . N 7 HOH A 105 1105 126 HOH HOH . N 7 HOH A 106 1106 154 HOH HOH . N 7 HOH A 107 1107 162 HOH HOH . N 7 HOH A 108 1108 88 HOH HOH . N 7 HOH A 109 1109 190 HOH HOH . N 7 HOH A 110 1110 87 HOH HOH . N 7 HOH A 111 1111 8 HOH HOH . O 7 HOH B 1 1001 52 HOH HOH . O 7 HOH B 2 1002 163 HOH HOH . O 7 HOH B 3 1003 103 HOH HOH . O 7 HOH B 4 1004 204 HOH HOH . O 7 HOH B 5 1005 116 HOH HOH . O 7 HOH B 6 1006 160 HOH HOH . O 7 HOH B 7 1007 77 HOH HOH . O 7 HOH B 8 1008 175 HOH HOH . O 7 HOH B 9 1009 185 HOH HOH . O 7 HOH B 10 1010 207 HOH HOH . O 7 HOH B 11 1011 219 HOH HOH . O 7 HOH B 12 1012 165 HOH HOH . O 7 HOH B 13 1013 26 HOH HOH . O 7 HOH B 14 1014 100 HOH HOH . O 7 HOH B 15 1015 166 HOH HOH . O 7 HOH B 16 1016 27 HOH HOH . O 7 HOH B 17 1017 109 HOH HOH . O 7 HOH B 18 1018 203 HOH HOH . O 7 HOH B 19 1019 140 HOH HOH . O 7 HOH B 20 1020 79 HOH HOH . O 7 HOH B 21 1021 11 HOH HOH . O 7 HOH B 22 1022 202 HOH HOH . O 7 HOH B 23 1023 34 HOH HOH . O 7 HOH B 24 1024 38 HOH HOH . O 7 HOH B 25 1025 206 HOH HOH . O 7 HOH B 26 1026 92 HOH HOH . O 7 HOH B 27 1027 90 HOH HOH . O 7 HOH B 28 1028 55 HOH HOH . O 7 HOH B 29 1029 23 HOH HOH . O 7 HOH B 30 1030 89 HOH HOH . O 7 HOH B 31 1031 145 HOH HOH . O 7 HOH B 32 1032 39 HOH HOH . O 7 HOH B 33 1033 144 HOH HOH . O 7 HOH B 34 1034 155 HOH HOH . O 7 HOH B 35 1035 188 HOH HOH . O 7 HOH B 36 1036 24 HOH HOH . O 7 HOH B 37 1037 218 HOH HOH . O 7 HOH B 38 1038 1 HOH HOH . O 7 HOH B 39 1039 70 HOH HOH . O 7 HOH B 40 1040 83 HOH HOH . O 7 HOH B 41 1041 99 HOH HOH . O 7 HOH B 42 1042 81 HOH HOH . O 7 HOH B 43 1043 41 HOH HOH . O 7 HOH B 44 1044 6 HOH HOH . O 7 HOH B 45 1045 32 HOH HOH . O 7 HOH B 46 1046 16 HOH HOH . O 7 HOH B 47 1047 122 HOH HOH . O 7 HOH B 48 1048 174 HOH HOH . O 7 HOH B 49 1049 48 HOH HOH . O 7 HOH B 50 1050 114 HOH HOH . O 7 HOH B 51 1051 93 HOH HOH . O 7 HOH B 52 1052 180 HOH HOH . O 7 HOH B 53 1053 30 HOH HOH . O 7 HOH B 54 1054 28 HOH HOH . O 7 HOH B 55 1055 69 HOH HOH . O 7 HOH B 56 1056 111 HOH HOH . O 7 HOH B 57 1057 18 HOH HOH . O 7 HOH B 58 1058 220 HOH HOH . O 7 HOH B 59 1059 76 HOH HOH . O 7 HOH B 60 1060 2 HOH HOH . O 7 HOH B 61 1061 191 HOH HOH . O 7 HOH B 62 1062 150 HOH HOH . O 7 HOH B 63 1063 167 HOH HOH . O 7 HOH B 64 1064 40 HOH HOH . O 7 HOH B 65 1065 113 HOH HOH . O 7 HOH B 66 1066 49 HOH HOH . O 7 HOH B 67 1067 78 HOH HOH . O 7 HOH B 68 1068 152 HOH HOH . O 7 HOH B 69 1069 221 HOH HOH . O 7 HOH B 70 1070 186 HOH HOH . O 7 HOH B 71 1071 97 HOH HOH . O 7 HOH B 72 1072 215 HOH HOH . O 7 HOH B 73 1073 68 HOH HOH . O 7 HOH B 74 1074 138 HOH HOH . O 7 HOH B 75 1075 54 HOH HOH . O 7 HOH B 76 1076 171 HOH HOH . O 7 HOH B 77 1077 141 HOH HOH . O 7 HOH B 78 1078 53 HOH HOH . O 7 HOH B 79 1079 181 HOH HOH . O 7 HOH B 80 1080 142 HOH HOH . O 7 HOH B 81 1081 194 HOH HOH . O 7 HOH B 82 1082 104 HOH HOH . O 7 HOH B 83 1083 137 HOH HOH . O 7 HOH B 84 1084 51 HOH HOH . O 7 HOH B 85 1085 139 HOH HOH . O 7 HOH B 86 1086 118 HOH HOH . O 7 HOH B 87 1087 192 HOH HOH . O 7 HOH B 88 1088 102 HOH HOH . O 7 HOH B 89 1089 15 HOH HOH . O 7 HOH B 90 1090 59 HOH HOH . O 7 HOH B 91 1091 223 HOH HOH . O 7 HOH B 92 1092 58 HOH HOH . O 7 HOH B 93 1093 217 HOH HOH . O 7 HOH B 94 1094 178 HOH HOH . O 7 HOH B 95 1095 110 HOH HOH . O 7 HOH B 96 1096 216 HOH HOH . O 7 HOH B 97 1097 205 HOH HOH . O 7 HOH B 98 1098 36 HOH HOH . O 7 HOH B 99 1099 193 HOH HOH . O 7 HOH B 100 1100 80 HOH HOH . O 7 HOH B 101 1101 134 HOH HOH . O 7 HOH B 102 1102 151 HOH HOH . O 7 HOH B 103 1103 149 HOH HOH . O 7 HOH B 104 1104 172 HOH HOH . O 7 HOH B 105 1105 182 HOH HOH . O 7 HOH B 106 1106 189 HOH HOH . O 7 HOH B 107 1107 177 HOH HOH . O 7 HOH B 108 1108 147 HOH HOH . O 7 HOH B 109 1109 112 HOH HOH . O 7 HOH B 110 1110 168 HOH HOH . O 7 HOH B 111 1111 115 HOH HOH . O 7 HOH B 112 1112 117 HOH HOH . O 7 HOH B 113 1113 222 HOH HOH . O 7 HOH B 114 1114 224 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.485 _atom_site.Cartn_y 60.899 _atom_site.Cartn_z 39.707 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 902 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #