data_8BNW # _model_server_result.job_id m5qq1tF0xh3KfTM1YKjljA _model_server_result.datetime_utc '2024-11-15 18:34:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8BNW # _exptl.entry_id 8BNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BNW _cell.length_a 35.369 _cell.length_b 118.433 _cell.length_c 141.046 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 54 A LEU 54 1_555 D NI NI . A NI 303 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 A OD2 ASP 88 A ASP 88 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc3 A OD2 ASP 88 A ASP 88 1_555 B NI NI . A NI 301 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 A OE2 GLU 90 A GLU 90 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 A OE1 GLU 94 A GLU 94 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 A OE2 GLU 94 A GLU 94 1_555 E NI NI . A NI 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc7 A OE1 GLU 94 A GLU 94 1_555 E NI NI . A NI 304 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc8 A OE1 GLU 111 A GLU 111 1_555 D NI NI . A NI 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc9 A NZ LYS 146 A LYS 146 1_555 D NI NI . A NI 303 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc10 A OE2 GLU 149 A GLU 149 1_555 D NI NI . A NI 303 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? metalc ? metalc11 A OE1 GLU 151 A GLU 151 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc12 A OE2 GLU 151 A GLU 151 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc13 A OE2 GLU 151 A GLU 151 1_555 C NI NI . A NI 302 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc14 A OE2 GLU 155 A GLU 155 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc15 A OE2 GLU 211 A GLU 211 1_555 F NI NI . A NI 305 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc16 A NZ LYS 294 A LYS 294 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc17 A OE1 GLU 297 A GLU 297 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc18 B NI NI . A NI 301 1_555 G O2 SO4 . A SO4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc19 B NI NI . A NI 301 1_555 G S SO4 . A SO4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc20 B NI NI . A NI 301 1_555 G O4 SO4 . A SO4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc21 B NI NI . A NI 301 1_555 G O4 SO4 . A SO4 306 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc22 B NI NI . A NI 301 1_555 I O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc23 E NI NI . A NI 304 1_555 G O1 SO4 . A SO4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc24 E NI NI . A NI 304 1_555 G O3 SO4 . A SO4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc25 E NI NI . A NI 304 1_555 G S SO4 . A SO4 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc26 E NI NI . A NI 304 1_555 G O1 SO4 . A SO4 306 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BNW _atom_sites.fract_transf_matrix[1][1] 0.028273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 301 1 NI NI . C 2 NI A 1 302 2 NI NI . D 2 NI A 1 303 3 NI NI . E 2 NI A 1 304 4 NI NI . F 2 NI A 1 305 5 NI NI . G 3 SO4 A 1 306 1 SO4 SO4 . H 3 SO4 A 1 307 2 SO4 SO4 . I 4 HOH A 1 401 8 HOH HOH . I 4 HOH A 2 402 3 HOH HOH . I 4 HOH A 3 403 4 HOH HOH . I 4 HOH A 4 404 2 HOH HOH . I 4 HOH A 5 405 11 HOH HOH . I 4 HOH A 6 406 7 HOH HOH . I 4 HOH A 7 407 1 HOH HOH . I 4 HOH A 8 408 9 HOH HOH . I 4 HOH A 9 409 10 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.991 _atom_site.Cartn_y -14.284 _atom_site.Cartn_z -34.915 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 58.33 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #