data_8BNX # _model_server_result.job_id dz3-uKJrb94XBht-dxtoiQ _model_server_result.datetime_utc '2024-12-26 14:32:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1501}' # _entry.id 8BNX # _exptl.entry_id 8BNX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BNX _cell.length_a 143.797 _cell.length_b 151.376 _cell.length_c 51.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8BNX _atom_sites.fract_transf_matrix[1][1] 0.006954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ANP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1501 _pdbx_nonpoly_scheme.auth_seq_num 1501 _pdbx_nonpoly_scheme.pdb_mon_id ANP _pdbx_nonpoly_scheme.auth_mon_id ANP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 26.09 8.108 -1.434 1 152.49 ? PG ANP 1501 A 1 HETATM 2 O O1G ANP . . . C 2 24.646 8.391 -1.162 1 139.18 ? O1G ANP 1501 A 1 HETATM 3 O O2G ANP . . . C 2 26.388 6.584 -1.157 1 145.98 ? O2G ANP 1501 A 1 HETATM 4 O O3G ANP . . . C 2 26.395 8.44 -2.95 1 166.5 ? O3G ANP 1501 A 1 HETATM 5 P PB ANP . . . C 2 26.812 8.918 1.161 1 157.15 ? PB ANP 1501 A 1 HETATM 6 O O1B ANP . . . C 2 27.785 7.946 1.742 1 139.02 ? O1B ANP 1501 A 1 HETATM 7 O O2B ANP . . . C 2 27.002 10.301 1.849 1 176.98 ? O2B ANP 1501 A 1 HETATM 8 N N3B ANP . . . C 2 27.098 9.086 -0.484 1 163.5 ? N3B ANP 1501 A 1 HETATM 9 P PA ANP . . . C 2 24.771 8.301 2.862 1 156.74 ? PA ANP 1501 A 1 HETATM 10 O O1A ANP . . . C 2 24.067 7.012 3.055 1 152.15 -1 O1A ANP 1501 A 1 HETATM 11 O O2A ANP . . . C 2 25.938 8.522 3.829 1 147.44 ? O2A ANP 1501 A 1 HETATM 12 O O3A ANP . . . C 2 25.358 8.414 1.396 1 134.01 ? O3A ANP 1501 A 1 HETATM 13 O O5' ANP . . . C 2 23.704 9.468 2.956 1 159.43 ? O5' ANP 1501 A 1 HETATM 14 C C5' ANP . . . C 2 24.105 10.851 3.059 1 147.4 ? C5' ANP 1501 A 1 HETATM 15 C C4' ANP . . . C 2 23.623 11.392 4.381 1 156.52 ? C4' ANP 1501 A 1 HETATM 16 O O4' ANP . . . C 2 22.303 11.955 4.213 1 153.91 ? O4' ANP 1501 A 1 HETATM 17 C C3' ANP . . . C 2 23.495 10.355 5.493 1 159.33 ? C3' ANP 1501 A 1 HETATM 18 O O3' ANP . . . C 2 24.702 10.261 6.241 1 141.66 ? O3' ANP 1501 A 1 HETATM 19 C C2' ANP . . . C 2 22.347 10.908 6.336 1 153.96 ? C2' ANP 1501 A 1 HETATM 20 O O2' ANP . . . C 2 22.806 11.89 7.257 1 166.89 ? O2' ANP 1501 A 1 HETATM 21 C C1' ANP . . . C 2 21.454 11.545 5.269 1 152.41 ? C1' ANP 1501 A 1 HETATM 22 N N9 ANP . . . C 2 20.446 10.644 4.723 1 150.21 ? N9 ANP 1501 A 1 HETATM 23 C C8 ANP . . . C 2 20.593 9.77 3.677 1 154.07 ? C8 ANP 1501 A 1 HETATM 24 N N7 ANP . . . C 2 19.515 9.078 3.396 1 151.37 ? N7 ANP 1501 A 1 HETATM 25 C C5 ANP . . . C 2 18.59 9.531 4.328 1 150.51 ? C5 ANP 1501 A 1 HETATM 26 C C6 ANP . . . C 2 17.242 9.191 4.563 1 157.82 ? C6 ANP 1501 A 1 HETATM 27 N N6 ANP . . . C 2 16.569 8.282 3.854 1 150.23 ? N6 ANP 1501 A 1 HETATM 28 N N1 ANP . . . C 2 16.603 9.829 5.57 1 170.83 ? N1 ANP 1501 A 1 HETATM 29 C C2 ANP . . . C 2 17.272 10.741 6.282 1 164.71 ? C2 ANP 1501 A 1 HETATM 30 N N3 ANP . . . C 2 18.54 11.141 6.152 1 159.38 ? N3 ANP 1501 A 1 HETATM 31 C C4 ANP . . . C 2 19.146 10.492 5.148 1 153.98 ? C4 ANP 1501 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #