data_8BO4
#
_model_server_result.job_id            IrK2UX-bo-b2jfdIlAqd0A 
_model_server_result.datetime_utc      '2024-12-16 18:52:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bo4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    8BO4 
#
_exptl.entry_id    8BO4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BO4 
_cell.length_a            59.303 
_cell.length_b            59.449 
_cell.length_c            68.148 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BO4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 AAA CYS 416 1_555 A SG CYS 45 AAA CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf2 A SG CYS 127 AAA CYS 514 1_555 A SG CYS 194 AAA CYS 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
disulf ? disulf3 A SG CYS 158 AAA CYS 545 1_555 A SG CYS 173 AAA CYS 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 A SG CYS 184 AAA CYS 571 1_555 A SG CYS 212 AAA CYS 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8BO4 
_atom_sites.fract_transf_matrix[1][1]    0.016863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL AAA 1 701 701 GOL GOL . 
C 3 QVI AAA 1 702 1 QVI INX . 
D 4 HOH AAA 1 801 70 HOH HOH . 
D 4 HOH AAA 2 802 132 HOH HOH . 
D 4 HOH AAA 3 803 61 HOH HOH . 
D 4 HOH AAA 4 804 106 HOH HOH . 
D 4 HOH AAA 5 805 172 HOH HOH . 
D 4 HOH AAA 6 806 34 HOH HOH . 
D 4 HOH AAA 7 807 168 HOH HOH . 
D 4 HOH AAA 8 808 116 HOH HOH . 
D 4 HOH AAA 9 809 105 HOH HOH . 
D 4 HOH AAA 10 810 87 HOH HOH . 
D 4 HOH AAA 11 811 129 HOH HOH . 
D 4 HOH AAA 12 812 169 HOH HOH . 
D 4 HOH AAA 13 813 90 HOH HOH . 
D 4 HOH AAA 14 814 128 HOH HOH . 
D 4 HOH AAA 15 815 71 HOH HOH . 
D 4 HOH AAA 16 816 56 HOH HOH . 
D 4 HOH AAA 17 817 122 HOH HOH . 
D 4 HOH AAA 18 818 117 HOH HOH . 
D 4 HOH AAA 19 819 20 HOH HOH . 
D 4 HOH AAA 20 820 142 HOH HOH . 
D 4 HOH AAA 21 821 77 HOH HOH . 
D 4 HOH AAA 22 822 176 HOH HOH . 
D 4 HOH AAA 23 823 3 HOH HOH . 
D 4 HOH AAA 24 824 22 HOH HOH . 
D 4 HOH AAA 25 825 152 HOH HOH . 
D 4 HOH AAA 26 826 83 HOH HOH . 
D 4 HOH AAA 27 827 76 HOH HOH . 
D 4 HOH AAA 28 828 9 HOH HOH . 
D 4 HOH AAA 29 829 31 HOH HOH . 
D 4 HOH AAA 30 830 114 HOH HOH . 
D 4 HOH AAA 31 831 62 HOH HOH . 
D 4 HOH AAA 32 832 16 HOH HOH . 
D 4 HOH AAA 33 833 50 HOH HOH . 
D 4 HOH AAA 34 834 124 HOH HOH . 
D 4 HOH AAA 35 835 146 HOH HOH . 
D 4 HOH AAA 36 836 15 HOH HOH . 
D 4 HOH AAA 37 837 133 HOH HOH . 
D 4 HOH AAA 38 838 18 HOH HOH . 
D 4 HOH AAA 39 839 134 HOH HOH . 
D 4 HOH AAA 40 840 10 HOH HOH . 
D 4 HOH AAA 41 841 99 HOH HOH . 
D 4 HOH AAA 42 842 19 HOH HOH . 
D 4 HOH AAA 43 843 149 HOH HOH . 
D 4 HOH AAA 44 844 125 HOH HOH . 
D 4 HOH AAA 45 845 67 HOH HOH . 
D 4 HOH AAA 46 846 49 HOH HOH . 
D 4 HOH AAA 47 847 127 HOH HOH . 
D 4 HOH AAA 48 848 12 HOH HOH . 
D 4 HOH AAA 49 849 58 HOH HOH . 
D 4 HOH AAA 50 850 57 HOH HOH . 
D 4 HOH AAA 51 851 28 HOH HOH . 
D 4 HOH AAA 52 852 145 HOH HOH . 
D 4 HOH AAA 53 853 143 HOH HOH . 
D 4 HOH AAA 54 854 74 HOH HOH . 
D 4 HOH AAA 55 855 69 HOH HOH . 
D 4 HOH AAA 56 856 65 HOH HOH . 
D 4 HOH AAA 57 857 97 HOH HOH . 
D 4 HOH AAA 58 858 24 HOH HOH . 
D 4 HOH AAA 59 859 36 HOH HOH . 
D 4 HOH AAA 60 860 108 HOH HOH . 
D 4 HOH AAA 61 861 5 HOH HOH . 
D 4 HOH AAA 62 862 33 HOH HOH . 
D 4 HOH AAA 63 863 102 HOH HOH . 
D 4 HOH AAA 64 864 120 HOH HOH . 
D 4 HOH AAA 65 865 113 HOH HOH . 
D 4 HOH AAA 66 866 80 HOH HOH . 
D 4 HOH AAA 67 867 73 HOH HOH . 
D 4 HOH AAA 68 868 141 HOH HOH . 
D 4 HOH AAA 69 869 94 HOH HOH . 
D 4 HOH AAA 70 870 52 HOH HOH . 
D 4 HOH AAA 71 871 11 HOH HOH . 
D 4 HOH AAA 72 872 30 HOH HOH . 
D 4 HOH AAA 73 873 4 HOH HOH . 
D 4 HOH AAA 74 874 63 HOH HOH . 
D 4 HOH AAA 75 875 46 HOH HOH . 
D 4 HOH AAA 76 876 32 HOH HOH . 
D 4 HOH AAA 77 877 53 HOH HOH . 
D 4 HOH AAA 78 878 158 HOH HOH . 
D 4 HOH AAA 79 879 101 HOH HOH . 
D 4 HOH AAA 80 880 103 HOH HOH . 
D 4 HOH AAA 81 881 88 HOH HOH . 
D 4 HOH AAA 82 882 25 HOH HOH . 
D 4 HOH AAA 83 883 17 HOH HOH . 
D 4 HOH AAA 84 884 136 HOH HOH . 
D 4 HOH AAA 85 885 130 HOH HOH . 
D 4 HOH AAA 86 886 60 HOH HOH . 
D 4 HOH AAA 87 887 119 HOH HOH . 
D 4 HOH AAA 88 888 98 HOH HOH . 
D 4 HOH AAA 89 889 8 HOH HOH . 
D 4 HOH AAA 90 890 45 HOH HOH . 
D 4 HOH AAA 91 891 177 HOH HOH . 
D 4 HOH AAA 92 892 27 HOH HOH . 
D 4 HOH AAA 93 893 6 HOH HOH . 
D 4 HOH AAA 94 894 165 HOH HOH . 
D 4 HOH AAA 95 895 48 HOH HOH . 
D 4 HOH AAA 96 896 29 HOH HOH . 
D 4 HOH AAA 97 897 157 HOH HOH . 
D 4 HOH AAA 98 898 100 HOH HOH . 
D 4 HOH AAA 99 899 178 HOH HOH . 
D 4 HOH AAA 100 900 115 HOH HOH . 
D 4 HOH AAA 101 901 40 HOH HOH . 
D 4 HOH AAA 102 902 55 HOH HOH . 
D 4 HOH AAA 103 903 140 HOH HOH . 
D 4 HOH AAA 104 904 75 HOH HOH . 
D 4 HOH AAA 105 905 148 HOH HOH . 
D 4 HOH AAA 106 906 13 HOH HOH . 
D 4 HOH AAA 107 907 39 HOH HOH . 
D 4 HOH AAA 108 908 44 HOH HOH . 
D 4 HOH AAA 109 909 156 HOH HOH . 
D 4 HOH AAA 110 910 81 HOH HOH . 
D 4 HOH AAA 111 911 66 HOH HOH . 
D 4 HOH AAA 112 912 42 HOH HOH . 
D 4 HOH AAA 113 913 162 HOH HOH . 
D 4 HOH AAA 114 914 35 HOH HOH . 
D 4 HOH AAA 115 915 92 HOH HOH . 
D 4 HOH AAA 116 916 38 HOH HOH . 
D 4 HOH AAA 117 917 78 HOH HOH . 
D 4 HOH AAA 118 918 68 HOH HOH . 
D 4 HOH AAA 119 919 123 HOH HOH . 
D 4 HOH AAA 120 920 150 HOH HOH . 
D 4 HOH AAA 121 921 72 HOH HOH . 
D 4 HOH AAA 122 922 104 HOH HOH . 
D 4 HOH AAA 123 923 95 HOH HOH . 
D 4 HOH AAA 124 924 138 HOH HOH . 
D 4 HOH AAA 125 925 14 HOH HOH . 
D 4 HOH AAA 126 926 43 HOH HOH . 
D 4 HOH AAA 127 927 26 HOH HOH . 
D 4 HOH AAA 128 928 84 HOH HOH . 
D 4 HOH AAA 129 929 107 HOH HOH . 
D 4 HOH AAA 130 930 151 HOH HOH . 
D 4 HOH AAA 131 931 59 HOH HOH . 
D 4 HOH AAA 132 932 21 HOH HOH . 
D 4 HOH AAA 133 933 160 HOH HOH . 
D 4 HOH AAA 134 934 41 HOH HOH . 
D 4 HOH AAA 135 935 109 HOH HOH . 
D 4 HOH AAA 136 936 7 HOH HOH . 
D 4 HOH AAA 137 937 89 HOH HOH . 
D 4 HOH AAA 138 938 118 HOH HOH . 
D 4 HOH AAA 139 939 137 HOH HOH . 
D 4 HOH AAA 140 940 110 HOH HOH . 
D 4 HOH AAA 141 941 85 HOH HOH . 
D 4 HOH AAA 142 942 126 HOH HOH . 
D 4 HOH AAA 143 943 91 HOH HOH . 
D 4 HOH AAA 144 944 147 HOH HOH . 
D 4 HOH AAA 145 945 79 HOH HOH . 
D 4 HOH AAA 146 946 54 HOH HOH . 
D 4 HOH AAA 147 947 139 HOH HOH . 
D 4 HOH AAA 148 948 37 HOH HOH . 
D 4 HOH AAA 149 949 1 HOH HOH . 
D 4 HOH AAA 150 950 111 HOH HOH . 
D 4 HOH AAA 151 951 153 HOH HOH . 
D 4 HOH AAA 152 952 166 HOH HOH . 
D 4 HOH AAA 153 953 51 HOH HOH . 
D 4 HOH AAA 154 954 82 HOH HOH . 
D 4 HOH AAA 155 955 23 HOH HOH . 
D 4 HOH AAA 156 956 173 HOH HOH . 
D 4 HOH AAA 157 957 131 HOH HOH . 
D 4 HOH AAA 158 958 135 HOH HOH . 
D 4 HOH AAA 159 959 154 HOH HOH . 
D 4 HOH AAA 160 960 96 HOH HOH . 
D 4 HOH AAA 161 961 47 HOH HOH . 
D 4 HOH AAA 162 962 112 HOH HOH . 
D 4 HOH AAA 163 963 164 HOH HOH . 
D 4 HOH AAA 164 964 167 HOH HOH . 
D 4 HOH AAA 165 965 163 HOH HOH . 
D 4 HOH AAA 166 966 93 HOH HOH . 
D 4 HOH AAA 167 967 121 HOH HOH . 
D 4 HOH AAA 168 968 2 HOH HOH . 
D 4 HOH AAA 169 969 159 HOH HOH . 
D 4 HOH AAA 170 970 155 HOH HOH . 
D 4 HOH AAA 171 971 86 HOH HOH . 
D 4 HOH AAA 172 972 175 HOH HOH . 
D 4 HOH AAA 173 973 161 HOH HOH . 
D 4 HOH AAA 174 974 171 HOH HOH . 
D 4 HOH AAA 175 975 144 HOH HOH . 
D 4 HOH AAA 176 976 64 HOH HOH . 
D 4 HOH AAA 177 977 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -21.994 8.041 -25.514 1 54.42 0 C1 GOL 701 AAA 1 
HETATM 2 O O1 GOL . . . B 2 -20.957 8.014 -26.493 1 54.7 0 O1 GOL 701 AAA 1 
HETATM 3 C C2 GOL . . . B 2 -22.63 9.399 -25.376 1 53.41 0 C2 GOL 701 AAA 1 
HETATM 4 O O2 GOL . . . B 2 -22.775 9.714 -23.989 1 53.31 0 O2 GOL 701 AAA 1 
HETATM 5 C C3 GOL . . . B 2 -23.972 9.484 -26.08 1 54.37 0 C3 GOL 701 AAA 1 
HETATM 6 O O3 GOL . . . B 2 -24.851 8.429 -25.684 1 48.77 0 O3 GOL 701 AAA 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#