data_8BOB # _model_server_result.job_id jjNCDjswWp5QtvVxeTHLUg _model_server_result.datetime_utc '2025-04-18 06:46:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":400}' # _entry.id 8BOB # _exptl.entry_id 8BOB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BOB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 302 n y N1 C6 PLP sing 303 n y C2 C2A PLP sing 304 n n C2 C3 PLP sing 305 n y C2A H2A1 PLP sing 306 n n C2A H2A2 PLP sing 307 n n C2A H2A3 PLP sing 308 n n C3 O3 PLP sing 309 n n C3 C4 PLP doub 310 n y O3 HO3 PLP sing 311 n n C4 C4A PLP sing 312 n n C4 C5 PLP sing 313 n y C4A O4A PLP doub 314 n n C4A H4A PLP sing 315 n n C5 C6 PLP doub 316 n y C5 C5A PLP sing 317 n n C6 H6 PLP sing 318 n n C5A O4P PLP sing 319 n n C5A H5A1 PLP sing 320 n n C5A H5A2 PLP sing 321 n n O4P P PLP sing 322 n n P O1P PLP doub 323 n n P O2P PLP sing 324 n n P O3P PLP sing 325 n n O2P HOP2 PLP sing 326 n n O3P HOP3 PLP sing 327 n n # _atom_sites.entry_id 8BOB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PLP A 1 400 400 PLP PLP . F 3 PLP B 1 400 400 PLP PLP . G 4 ADP C 1 501 516 ADP ADP . H 4 ADP D 1 501 516 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . F 3 156.458 161.919 154.836 1 21.11 ? N1 PLP 400 B 1 HETATM 2 C C2 PLP . . . F 3 157.483 162.512 155.522 1 18.55 ? C2 PLP 400 B 1 HETATM 3 C C2A PLP . . . F 3 158.078 163.785 155.013 1 17.31 ? C2A PLP 400 B 1 HETATM 4 C C3 PLP . . . F 3 157.96 161.933 156.68 1 19.68 ? C3 PLP 400 B 1 HETATM 5 O O3 PLP . . . F 3 158.979 162.519 157.369 1 25.72 ? O3 PLP 400 B 1 HETATM 6 C C4 PLP . . . F 3 157.414 160.76 157.155 1 21.6 ? C4 PLP 400 B 1 HETATM 7 C C4A PLP . . . F 3 158.178 159.973 158.169 1 17.6 ? C4A PLP 400 B 1 HETATM 8 C C5 PLP . . . F 3 156.382 160.161 156.457 1 27.17 ? C5 PLP 400 B 1 HETATM 9 C C6 PLP . . . F 3 155.909 160.75 155.301 1 20.73 ? C6 PLP 400 B 1 HETATM 10 C C5A PLP . . . F 3 155.749 158.882 156.953 1 28.16 ? C5A PLP 400 B 1 HETATM 11 O O4P PLP . . . F 3 156.623 157.781 156.904 1 39.44 ? O4P PLP 400 B 1 HETATM 12 P P PLP . . . F 3 156.446 156.581 157.961 1 50.83 ? P PLP 400 B 1 HETATM 13 O O1P PLP . . . F 3 155.178 155.832 157.649 1 36.43 ? O1P PLP 400 B 1 HETATM 14 O O2P PLP . . . F 3 156.369 157.144 159.355 1 35.93 ? O2P PLP 400 B 1 HETATM 15 O O3P PLP . . . F 3 157.62 155.643 157.865 1 27.13 ? O3P PLP 400 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 15 #