data_8BP7
#
_model_server_result.job_id            EkncC6C4qwEWTSfEF2a6mQ 
_model_server_result.datetime_utc      '2024-12-02 16:11:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bp7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":403}' 
#
_entry.id    8BP7 
#
_exptl.entry_id    8BP7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8BP7 
_cell.length_a            170.46 
_cell.length_b            170.46 
_cell.length_c            545.44 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BP7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 M N N 
? 3 P N N 
? 3 T N N 
? 3 W N N 
? 3 X N N 
? 3 AA N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE1 GLU 187 B GLU 187 1_555 N MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc2 B OE2 GLU 187 B GLU 187 1_555 N MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc3 B O THR 189 B THR 189 1_555 N MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? 
metalc ? metalc4 C OD2 ASP 378 C ASP 378 1_555 Q MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc5 Q MG MG . C MG 403 1_555 E O PRO 60 E PRO 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc6 D O THR 374 D THR 374 1_555 U MG MG . D MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc7 F OD2 ASP 179 F ASP 179 1_555 DA MG MG . F MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc8 DA MG MG . F MG 406 1_555 JA O HOH . F HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     8BP7 
_atom_sites.fract_transf_matrix[1][1]    0.005866 
_atom_sites.fract_transf_matrix[1][2]    0.003387 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SO4 A 1 401 1 SO4 SO4 . 
H 3 CIT A 1 402 10 CIT CIT . 
I 3 CIT A 1 403 17 CIT CIT . 
J 2 SO4 A 1 404 1 SO4 SO4 . 
K 2 SO4 B 1 401 2 SO4 SO4 . 
L 2 SO4 B 1 402 7 SO4 SO4 . 
M 3 CIT B 1 403 11 CIT CIT . 
N 4 MG B 1 404 5 MG MG . 
O 2 SO4 C 1 401 8 SO4 SO4 . 
P 3 CIT C 1 402 12 CIT CIT . 
Q 4 MG C 1 403 2 MG MG . 
R 2 SO4 D 1 401 4 SO4 SO4 . 
S 2 SO4 D 1 402 5 SO4 SO4 . 
T 3 CIT D 1 403 13 CIT CIT . 
U 4 MG D 1 404 1 MG MG . 
V 2 SO4 E 1 401 6 SO4 SO4 . 
W 3 CIT E 1 402 14 CIT CIT . 
X 3 CIT E 1 403 15 CIT CIT . 
Y 2 SO4 F 1 401 3 SO4 SO4 . 
Z 2 SO4 F 1 402 9 SO4 SO4 . 
AA 3 CIT F 1 403 16 CIT CIT . 
BA 3 CIT F 1 404 18 CIT CIT . 
CA 4 MG F 1 405 3 MG MG . 
DA 4 MG F 1 406 4 MG MG . 
EA 5 HOH A 1 501 2 HOH HOH . 
EA 5 HOH A 2 502 99 HOH HOH . 
EA 5 HOH A 3 503 24 HOH HOH . 
EA 5 HOH A 4 504 56 HOH HOH . 
EA 5 HOH A 5 505 31 HOH HOH . 
EA 5 HOH A 6 506 68 HOH HOH . 
EA 5 HOH A 7 507 76 HOH HOH . 
EA 5 HOH A 8 508 49 HOH HOH . 
EA 5 HOH A 9 509 26 HOH HOH . 
EA 5 HOH A 10 510 89 HOH HOH . 
EA 5 HOH A 11 511 45 HOH HOH . 
EA 5 HOH A 12 512 59 HOH HOH . 
EA 5 HOH A 13 513 19 HOH HOH . 
EA 5 HOH A 14 514 142 HOH HOH . 
EA 5 HOH A 15 515 91 HOH HOH . 
EA 5 HOH A 16 516 114 HOH HOH . 
EA 5 HOH A 17 517 62 HOH HOH . 
EA 5 HOH A 18 518 86 HOH HOH . 
EA 5 HOH A 19 519 124 HOH HOH . 
EA 5 HOH A 20 520 126 HOH HOH . 
EA 5 HOH A 21 521 155 HOH HOH . 
EA 5 HOH A 22 522 53 HOH HOH . 
EA 5 HOH A 23 523 88 HOH HOH . 
EA 5 HOH A 24 524 121 HOH HOH . 
EA 5 HOH A 25 525 141 HOH HOH . 
EA 5 HOH A 26 526 65 HOH HOH . 
EA 5 HOH A 27 527 63 HOH HOH . 
FA 5 HOH B 1 501 10 HOH HOH . 
FA 5 HOH B 2 502 21 HOH HOH . 
FA 5 HOH B 3 503 37 HOH HOH . 
FA 5 HOH B 4 504 22 HOH HOH . 
FA 5 HOH B 5 505 40 HOH HOH . 
FA 5 HOH B 6 506 152 HOH HOH . 
FA 5 HOH B 7 507 94 HOH HOH . 
FA 5 HOH B 8 508 28 HOH HOH . 
FA 5 HOH B 9 509 25 HOH HOH . 
FA 5 HOH B 10 510 72 HOH HOH . 
FA 5 HOH B 11 511 133 HOH HOH . 
FA 5 HOH B 12 512 29 HOH HOH . 
GA 5 HOH C 1 501 33 HOH HOH . 
GA 5 HOH C 2 502 97 HOH HOH . 
GA 5 HOH C 3 503 151 HOH HOH . 
GA 5 HOH C 4 504 150 HOH HOH . 
GA 5 HOH C 5 505 159 HOH HOH . 
GA 5 HOH C 6 506 64 HOH HOH . 
GA 5 HOH C 7 507 160 HOH HOH . 
GA 5 HOH C 8 508 95 HOH HOH . 
GA 5 HOH C 9 509 127 HOH HOH . 
GA 5 HOH C 10 510 115 HOH HOH . 
GA 5 HOH C 11 511 81 HOH HOH . 
GA 5 HOH C 12 512 106 HOH HOH . 
GA 5 HOH C 13 513 110 HOH HOH . 
GA 5 HOH C 14 514 7 HOH HOH . 
GA 5 HOH C 15 515 140 HOH HOH . 
GA 5 HOH C 16 516 96 HOH HOH . 
GA 5 HOH C 17 517 73 HOH HOH . 
GA 5 HOH C 18 518 146 HOH HOH . 
GA 5 HOH C 19 519 35 HOH HOH . 
GA 5 HOH C 20 520 66 HOH HOH . 
GA 5 HOH C 21 521 83 HOH HOH . 
GA 5 HOH C 22 522 3 HOH HOH . 
GA 5 HOH C 23 523 36 HOH HOH . 
GA 5 HOH C 24 524 71 HOH HOH . 
GA 5 HOH C 25 525 161 HOH HOH . 
GA 5 HOH C 26 526 11 HOH HOH . 
GA 5 HOH C 27 527 143 HOH HOH . 
GA 5 HOH C 28 528 131 HOH HOH . 
GA 5 HOH C 29 529 105 HOH HOH . 
GA 5 HOH C 30 530 15 HOH HOH . 
GA 5 HOH C 31 531 116 HOH HOH . 
GA 5 HOH C 32 532 118 HOH HOH . 
GA 5 HOH C 33 533 125 HOH HOH . 
GA 5 HOH C 34 534 163 HOH HOH . 
GA 5 HOH C 35 535 101 HOH HOH . 
HA 5 HOH D 1 501 12 HOH HOH . 
HA 5 HOH D 2 502 30 HOH HOH . 
HA 5 HOH D 3 503 23 HOH HOH . 
HA 5 HOH D 4 504 18 HOH HOH . 
HA 5 HOH D 5 505 17 HOH HOH . 
HA 5 HOH D 6 506 80 HOH HOH . 
HA 5 HOH D 7 507 119 HOH HOH . 
HA 5 HOH D 8 508 13 HOH HOH . 
HA 5 HOH D 9 509 138 HOH HOH . 
HA 5 HOH D 10 510 107 HOH HOH . 
HA 5 HOH D 11 511 8 HOH HOH . 
HA 5 HOH D 12 512 20 HOH HOH . 
HA 5 HOH D 13 513 67 HOH HOH . 
HA 5 HOH D 14 514 130 HOH HOH . 
HA 5 HOH D 15 515 90 HOH HOH . 
HA 5 HOH D 16 516 43 HOH HOH . 
HA 5 HOH D 17 517 136 HOH HOH . 
HA 5 HOH D 18 518 69 HOH HOH . 
HA 5 HOH D 19 519 102 HOH HOH . 
HA 5 HOH D 20 520 129 HOH HOH . 
HA 5 HOH D 21 521 1 HOH HOH . 
HA 5 HOH D 22 522 42 HOH HOH . 
HA 5 HOH D 23 523 75 HOH HOH . 
HA 5 HOH D 24 524 148 HOH HOH . 
HA 5 HOH D 25 525 79 HOH HOH . 
HA 5 HOH D 26 526 117 HOH HOH . 
HA 5 HOH D 27 527 156 HOH HOH . 
HA 5 HOH D 28 528 87 HOH HOH . 
HA 5 HOH D 29 529 113 HOH HOH . 
HA 5 HOH D 30 530 92 HOH HOH . 
IA 5 HOH E 1 501 34 HOH HOH . 
IA 5 HOH E 2 502 51 HOH HOH . 
IA 5 HOH E 3 503 78 HOH HOH . 
IA 5 HOH E 4 504 44 HOH HOH . 
IA 5 HOH E 5 505 104 HOH HOH . 
IA 5 HOH E 6 506 32 HOH HOH . 
IA 5 HOH E 7 507 6 HOH HOH . 
IA 5 HOH E 8 508 77 HOH HOH . 
IA 5 HOH E 9 509 134 HOH HOH . 
IA 5 HOH E 10 510 14 HOH HOH . 
IA 5 HOH E 11 511 52 HOH HOH . 
IA 5 HOH E 12 512 103 HOH HOH . 
IA 5 HOH E 13 513 149 HOH HOH . 
IA 5 HOH E 14 514 132 HOH HOH . 
IA 5 HOH E 15 515 158 HOH HOH . 
IA 5 HOH E 16 516 109 HOH HOH . 
IA 5 HOH E 17 517 48 HOH HOH . 
IA 5 HOH E 18 518 38 HOH HOH . 
IA 5 HOH E 19 519 128 HOH HOH . 
IA 5 HOH E 20 520 46 HOH HOH . 
IA 5 HOH E 21 521 54 HOH HOH . 
IA 5 HOH E 22 522 135 HOH HOH . 
IA 5 HOH E 23 523 137 HOH HOH . 
IA 5 HOH E 24 524 60 HOH HOH . 
IA 5 HOH E 25 525 111 HOH HOH . 
IA 5 HOH E 26 526 55 HOH HOH . 
IA 5 HOH E 27 527 153 HOH HOH . 
IA 5 HOH E 28 528 145 HOH HOH . 
JA 5 HOH F 1 501 98 HOH HOH . 
JA 5 HOH F 2 502 100 HOH HOH . 
JA 5 HOH F 3 503 57 HOH HOH . 
JA 5 HOH F 4 504 85 HOH HOH . 
JA 5 HOH F 5 505 5 HOH HOH . 
JA 5 HOH F 6 506 39 HOH HOH . 
JA 5 HOH F 7 507 9 HOH HOH . 
JA 5 HOH F 8 508 47 HOH HOH . 
JA 5 HOH F 9 509 58 HOH HOH . 
JA 5 HOH F 10 510 4 HOH HOH . 
JA 5 HOH F 11 511 123 HOH HOH . 
JA 5 HOH F 12 512 139 HOH HOH . 
JA 5 HOH F 13 513 74 HOH HOH . 
JA 5 HOH F 14 514 84 HOH HOH . 
JA 5 HOH F 15 515 147 HOH HOH . 
JA 5 HOH F 16 516 50 HOH HOH . 
JA 5 HOH F 17 517 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . T 3 -42.095 58.312 -21.062 1 72.66 ? C1 CIT 403 D 1 
HETATM 2 O O1 CIT . . . T 3 -42.359 57.153 -20.686 1 70.49 ? O1 CIT 403 D 1 
HETATM 3 O O2 CIT . . . T 3 -41.347 59.031 -20.347 1 91.5 ? O2 CIT 403 D 1 
HETATM 4 C C2 CIT . . . T 3 -42.649 58.832 -22.388 1 83.23 ? C2 CIT 403 D 1 
HETATM 5 C C3 CIT . . . T 3 -44.088 59.365 -22.299 1 93.32 ? C3 CIT 403 D 1 
HETATM 6 O O7 CIT . . . T 3 -44.517 59.603 -20.982 1 103.33 ? O7 CIT 403 D 1 
HETATM 7 C C4 CIT . . . T 3 -44.184 60.665 -23.112 1 86.5 ? C4 CIT 403 D 1 
HETATM 8 C C5 CIT . . . T 3 -44.174 61.884 -22.178 1 108.16 ? C5 CIT 403 D 1 
HETATM 9 O O3 CIT . . . T 3 -45.261 62.413 -21.823 1 120.06 ? O3 CIT 403 D 1 
HETATM 10 O O4 CIT . . . T 3 -43.084 62.371 -21.763 1 108.9 ? O4 CIT 403 D 1 
HETATM 11 C C6 CIT . . . T 3 -45.001 58.291 -22.886 1 79.06 ? C6 CIT 403 D 1 
HETATM 12 O O5 CIT . . . T 3 -44.875 57.951 -24.088 1 79.17 ? O5 CIT 403 D 1 
HETATM 13 O O6 CIT . . . T 3 -45.864 57.732 -22.163 1 70.98 ? O6 CIT 403 D 1 
HETATM 14 H H21 CIT . . . T 3 -42.631 58.107 -23.032 1 99.83 ? H21 CIT 403 D 1 
HETATM 15 H H22 CIT . . . T 3 -42.076 59.552 -22.696 1 99.83 ? H22 CIT 403 D 1 
HETATM 16 H HO7 CIT . . . T 3 -44.752 58.869 -20.621 1 123.96 ? HO7 CIT 403 D 1 
HETATM 17 H H41 CIT . . . T 3 -45.008 60.662 -23.624 1 103.76 ? H41 CIT 403 D 1 
HETATM 18 H H42 CIT . . . T 3 -43.428 60.72 -23.717 1 103.76 ? H42 CIT 403 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           18 
#