data_8BPH # _model_server_result.job_id MER9mI4ho-Qvl4JZpgm2WA _model_server_result.datetime_utc '2024-11-05 08:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8BPH # _exptl.entry_id 8BPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.199 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Ru2-(OH)8 cluster' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BPH _cell.length_a 77.19 _cell.length_b 77.19 _cell.length_c 37.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc1 A NZ LYS 33 AAA LYS 33 1_555 D RU1 R3D . AAA R3D 203 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc2 A O ASP 101 AAA ASP 101 1_555 C RU2 R3D . AAA R3D 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'H8 O8 Ru2' _chem_comp.formula_weight 338.199 _chem_comp.id R3D _chem_comp.mon_nstd_flag . _chem_comp.name 'Ru2-(OH)8 cluster' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 RU2 R3D sing 277 n n O8 RU2 R3D sing 278 n n RU2 O4 R3D sing 279 n n RU2 O6 R3D sing 280 n n RU2 RU1 R3D sing 281 n n O1 RU1 R3D sing 282 n n O3 RU1 R3D sing 283 n n RU1 O7 R3D sing 284 n n RU1 O5 R3D sing 285 n n O1 H1 R3D sing 286 n n O2 H2 R3D sing 287 n n O3 H3 R3D sing 288 n n O4 H4 R3D sing 289 n n O5 H5 R3D sing 290 n n O6 H6 R3D sing 291 n n O7 H7 R3D sing 292 n n O8 H8 R3D sing 293 n n # _atom_sites.entry_id 8BPH _atom_sites.fract_transf_matrix[1][1] 0.012955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIN AAA 1 201 203 SIN SIN . C 3 R3D AAA 1 202 1 R3D DWR . D 3 R3D AAA 1 203 1 R3D DWR . E 4 HOH AAA 1 301 151 HOH HOH . E 4 HOH AAA 2 302 40 HOH HOH . E 4 HOH AAA 3 303 119 HOH HOH . E 4 HOH AAA 4 304 224 HOH HOH . E 4 HOH AAA 5 305 24 HOH HOH . E 4 HOH AAA 6 306 73 HOH HOH . E 4 HOH AAA 7 307 233 HOH HOH . E 4 HOH AAA 8 308 200 HOH HOH . E 4 HOH AAA 9 309 205 HOH HOH . E 4 HOH AAA 10 310 249 HOH HOH . E 4 HOH AAA 11 311 270 HOH HOH . E 4 HOH AAA 12 312 209 HOH HOH . E 4 HOH AAA 13 313 135 HOH HOH . E 4 HOH AAA 14 314 198 HOH HOH . E 4 HOH AAA 15 315 253 HOH HOH . E 4 HOH AAA 16 316 84 HOH HOH . E 4 HOH AAA 17 317 27 HOH HOH . E 4 HOH AAA 18 318 98 HOH HOH . E 4 HOH AAA 19 319 152 HOH HOH . E 4 HOH AAA 20 320 75 HOH HOH . E 4 HOH AAA 21 321 4 HOH HOH . E 4 HOH AAA 22 322 250 HOH HOH . E 4 HOH AAA 23 323 136 HOH HOH . E 4 HOH AAA 24 324 150 HOH HOH . E 4 HOH AAA 25 325 216 HOH HOH . E 4 HOH AAA 26 326 258 HOH HOH . E 4 HOH AAA 27 327 87 HOH HOH . E 4 HOH AAA 28 328 105 HOH HOH . E 4 HOH AAA 29 329 109 HOH HOH . E 4 HOH AAA 30 330 83 HOH HOH . E 4 HOH AAA 31 331 164 HOH HOH . E 4 HOH AAA 32 332 37 HOH HOH . E 4 HOH AAA 33 333 2 HOH HOH . E 4 HOH AAA 34 334 188 HOH HOH . E 4 HOH AAA 35 335 206 HOH HOH . E 4 HOH AAA 36 336 32 HOH HOH . E 4 HOH AAA 37 337 230 HOH HOH . E 4 HOH AAA 38 338 197 HOH HOH . E 4 HOH AAA 39 339 85 HOH HOH . E 4 HOH AAA 40 340 41 HOH HOH . E 4 HOH AAA 41 341 122 HOH HOH . E 4 HOH AAA 42 342 94 HOH HOH . E 4 HOH AAA 43 343 195 HOH HOH . E 4 HOH AAA 44 344 1 HOH HOH . E 4 HOH AAA 45 345 8 HOH HOH . E 4 HOH AAA 46 346 273 HOH HOH . E 4 HOH AAA 47 347 39 HOH HOH . E 4 HOH AAA 48 348 180 HOH HOH . E 4 HOH AAA 49 349 177 HOH HOH . E 4 HOH AAA 50 350 23 HOH HOH . E 4 HOH AAA 51 351 186 HOH HOH . E 4 HOH AAA 52 352 57 HOH HOH . E 4 HOH AAA 53 353 53 HOH HOH . E 4 HOH AAA 54 354 34 HOH HOH . E 4 HOH AAA 55 355 79 HOH HOH . E 4 HOH AAA 56 356 194 HOH HOH . E 4 HOH AAA 57 357 133 HOH HOH . E 4 HOH AAA 58 358 54 HOH HOH . E 4 HOH AAA 59 359 110 HOH HOH . E 4 HOH AAA 60 360 33 HOH HOH . E 4 HOH AAA 61 361 82 HOH HOH . E 4 HOH AAA 62 362 81 HOH HOH . E 4 HOH AAA 63 363 161 HOH HOH . E 4 HOH AAA 64 364 44 HOH HOH . E 4 HOH AAA 65 365 14 HOH HOH . E 4 HOH AAA 66 366 257 HOH HOH . E 4 HOH AAA 67 367 48 HOH HOH . E 4 HOH AAA 68 368 103 HOH HOH . E 4 HOH AAA 69 369 171 HOH HOH . E 4 HOH AAA 70 370 15 HOH HOH . E 4 HOH AAA 71 371 19 HOH HOH . E 4 HOH AAA 72 372 263 HOH HOH . E 4 HOH AAA 73 373 139 HOH HOH . E 4 HOH AAA 74 374 42 HOH HOH . E 4 HOH AAA 75 375 5 HOH HOH . E 4 HOH AAA 76 376 207 HOH HOH . E 4 HOH AAA 77 377 22 HOH HOH . E 4 HOH AAA 78 378 240 HOH HOH . E 4 HOH AAA 79 379 131 HOH HOH . E 4 HOH AAA 80 380 45 HOH HOH . E 4 HOH AAA 81 381 46 HOH HOH . E 4 HOH AAA 82 382 272 HOH HOH . E 4 HOH AAA 83 383 51 HOH HOH . E 4 HOH AAA 84 384 244 HOH HOH . E 4 HOH AAA 85 385 25 HOH HOH . E 4 HOH AAA 86 386 50 HOH HOH . E 4 HOH AAA 87 387 52 HOH HOH . E 4 HOH AAA 88 388 148 HOH HOH . E 4 HOH AAA 89 389 18 HOH HOH . E 4 HOH AAA 90 390 212 HOH HOH . E 4 HOH AAA 91 391 276 HOH HOH . E 4 HOH AAA 92 392 9 HOH HOH . E 4 HOH AAA 93 393 26 HOH HOH . E 4 HOH AAA 94 394 3 HOH HOH . E 4 HOH AAA 95 395 7 HOH HOH . E 4 HOH AAA 96 396 245 HOH HOH . E 4 HOH AAA 97 397 104 HOH HOH . E 4 HOH AAA 98 398 168 HOH HOH . E 4 HOH AAA 99 399 20 HOH HOH . E 4 HOH AAA 100 400 11 HOH HOH . E 4 HOH AAA 101 401 229 HOH HOH . E 4 HOH AAA 102 402 77 HOH HOH . E 4 HOH AAA 103 403 264 HOH HOH . E 4 HOH AAA 104 404 38 HOH HOH . E 4 HOH AAA 105 405 190 HOH HOH . E 4 HOH AAA 106 406 191 HOH HOH . E 4 HOH AAA 107 407 166 HOH HOH . E 4 HOH AAA 108 408 13 HOH HOH . E 4 HOH AAA 109 409 241 HOH HOH . E 4 HOH AAA 110 410 55 HOH HOH . E 4 HOH AAA 111 411 43 HOH HOH . E 4 HOH AAA 112 412 95 HOH HOH . E 4 HOH AAA 113 413 64 HOH HOH . E 4 HOH AAA 114 414 17 HOH HOH . E 4 HOH AAA 115 415 88 HOH HOH . E 4 HOH AAA 116 416 278 HOH HOH . E 4 HOH AAA 117 417 63 HOH HOH . E 4 HOH AAA 118 418 279 HOH HOH . E 4 HOH AAA 119 419 10 HOH HOH . E 4 HOH AAA 120 420 61 HOH HOH . E 4 HOH AAA 121 421 60 HOH HOH . E 4 HOH AAA 122 422 72 HOH HOH . E 4 HOH AAA 123 423 113 HOH HOH . E 4 HOH AAA 124 424 149 HOH HOH . E 4 HOH AAA 125 425 35 HOH HOH . E 4 HOH AAA 126 426 108 HOH HOH . E 4 HOH AAA 127 427 123 HOH HOH . E 4 HOH AAA 128 428 47 HOH HOH . E 4 HOH AAA 129 429 80 HOH HOH . E 4 HOH AAA 130 430 30 HOH HOH . E 4 HOH AAA 131 431 31 HOH HOH . E 4 HOH AAA 132 432 97 HOH HOH . E 4 HOH AAA 133 433 254 HOH HOH . E 4 HOH AAA 134 434 193 HOH HOH . E 4 HOH AAA 135 435 127 HOH HOH . E 4 HOH AAA 136 436 211 HOH HOH . E 4 HOH AAA 137 437 70 HOH HOH . E 4 HOH AAA 138 438 236 HOH HOH . E 4 HOH AAA 139 439 196 HOH HOH . E 4 HOH AAA 140 440 218 HOH HOH . E 4 HOH AAA 141 441 86 HOH HOH . E 4 HOH AAA 142 442 259 HOH HOH . E 4 HOH AAA 143 443 252 HOH HOH . E 4 HOH AAA 144 444 114 HOH HOH . E 4 HOH AAA 145 445 255 HOH HOH . E 4 HOH AAA 146 446 220 HOH HOH . E 4 HOH AAA 147 447 237 HOH HOH . E 4 HOH AAA 148 448 239 HOH HOH . E 4 HOH AAA 149 449 129 HOH HOH . E 4 HOH AAA 150 450 277 HOH HOH . E 4 HOH AAA 151 451 12 HOH HOH . E 4 HOH AAA 152 452 265 HOH HOH . E 4 HOH AAA 153 453 217 HOH HOH . E 4 HOH AAA 154 454 219 HOH HOH . E 4 HOH AAA 155 455 128 HOH HOH . E 4 HOH AAA 156 456 185 HOH HOH . E 4 HOH AAA 157 457 58 HOH HOH . E 4 HOH AAA 158 458 173 HOH HOH . E 4 HOH AAA 159 459 222 HOH HOH . E 4 HOH AAA 160 460 202 HOH HOH . E 4 HOH AAA 161 461 117 HOH HOH . E 4 HOH AAA 162 462 213 HOH HOH . E 4 HOH AAA 163 463 172 HOH HOH . E 4 HOH AAA 164 464 56 HOH HOH . E 4 HOH AAA 165 465 235 HOH HOH . E 4 HOH AAA 166 466 201 HOH HOH . E 4 HOH AAA 167 467 116 HOH HOH . E 4 HOH AAA 168 468 66 HOH HOH . E 4 HOH AAA 169 469 96 HOH HOH . E 4 HOH AAA 170 470 155 HOH HOH . E 4 HOH AAA 171 471 208 HOH HOH . E 4 HOH AAA 172 472 225 HOH HOH . E 4 HOH AAA 173 473 92 HOH HOH . E 4 HOH AAA 174 474 138 HOH HOH . E 4 HOH AAA 175 475 169 HOH HOH . E 4 HOH AAA 176 476 71 HOH HOH . E 4 HOH AAA 177 477 199 HOH HOH . E 4 HOH AAA 178 478 124 HOH HOH . E 4 HOH AAA 179 479 256 HOH HOH . E 4 HOH AAA 180 480 187 HOH HOH . E 4 HOH AAA 181 481 89 HOH HOH . E 4 HOH AAA 182 482 115 HOH HOH . E 4 HOH AAA 183 483 189 HOH HOH . E 4 HOH AAA 184 484 102 HOH HOH . E 4 HOH AAA 185 485 210 HOH HOH . E 4 HOH AAA 186 486 120 HOH HOH . E 4 HOH AAA 187 487 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 R3D . . . D 3 -22.266 2.271 11.715 0.2 18.88 0 O1 R3D 203 AAA 1 HETATM 2 O O2 R3D . . . D 3 -23.123 2.768 10.014 0.2 18.26 0 O2 R3D 203 AAA 1 HETATM 3 O O3 R3D . . . D 3 -23.382 4.704 12.727 0.2 18.41 0 O3 R3D 203 AAA 1 HETATM 4 O O4 R3D . . . D 3 -24.668 4.925 10.846 0.2 19.2 0 O4 R3D 203 AAA 1 HETATM 5 O O5 R3D . . . D 3 -25.597 3.26 13.756 0.2 19.3 0 O5 R3D 203 AAA 1 HETATM 6 O O6 R3D . . . D 3 -26.736 3.138 11.744 0.2 20.01 0 O6 R3D 203 AAA 1 HETATM 7 O O7 R3D . . . D 3 -24.449 0.809 12.836 0.2 18.91 0 O7 R3D 203 AAA 1 HETATM 8 O O8 R3D . . . D 3 -25.25 0.926 10.711 0.2 19.2 0 O8 R3D 203 AAA 1 HETATM 9 RU RU1 R3D . . . D 3 -23.898 2.752 12.799 0.2 17.52 0 RU1 R3D 203 AAA 1 HETATM 10 RU RU2 R3D . . . D 3 -24.967 2.926 10.802 0.2 19.21 0 RU2 R3D 203 AAA 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #