data_8BPJ # _model_server_result.job_id 1Kk2pJNkuUQrQuQuIqj-5Q _model_server_result.datetime_utc '2024-11-05 06:55:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8BPJ # _exptl.entry_id 8BPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BPJ _cell.length_a 77.48 _cell.length_b 77.48 _cell.length_c 37.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc3 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 A OD1 ASP 101 AAA ASP 101 1_555 I RU2 TZ6 . AAA TZ6 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.263 ? metalc ? metalc6 A OD2 ASP 101 AAA ASP 101 1_555 I RU1 TZ6 . AAA TZ6 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.144 ? metalc ? metalc7 A OD1 ASP 119 AAA ASP 119 1_555 H RU2 TZ6 . AAA TZ6 207 4_544 ? A ? ? A ? ? ? ? ? ? ? 2.174 ? metalc ? metalc8 A OD2 ASP 119 AAA ASP 119 1_555 H RU1 TZ6 . AAA TZ6 207 4_544 ? A ? ? A ? ? ? ? ? ? ? 2.033 ? metalc ? metalc9 B NA NA . AAA NA 201 1_555 C O3 NO3 . AAA NO3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc10 B NA NA . AAA NA 201 1_555 J O HOH . AAA HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc11 H RU2 TZ6 . AAA TZ6 207 1_555 J O HOH . AAA HOH 339 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc12 H RU1 TZ6 . AAA TZ6 207 1_555 J O HOH . AAA HOH 340 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8BPJ _atom_sites.fract_transf_matrix[1][1] 0.012907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA AAA 1 201 131 NA NA . C 3 NO3 AAA 1 202 132 NO3 NO3 . D 3 NO3 AAA 1 203 133 NO3 NO3 . E 3 NO3 AAA 1 204 134 NO3 NO3 . F 3 NO3 AAA 1 205 135 NO3 NO3 . G 3 NO3 AAA 1 206 136 NO3 NO3 . H 4 TZ6 AAA 1 207 1 TZ6 TM5 . I 4 TZ6 AAA 1 208 2 TZ6 TM5 . J 5 HOH AAA 1 301 56 HOH HOH . J 5 HOH AAA 2 302 111 HOH HOH . J 5 HOH AAA 3 303 38 HOH HOH . J 5 HOH AAA 4 304 108 HOH HOH . J 5 HOH AAA 5 305 148 HOH HOH . J 5 HOH AAA 6 306 27 HOH HOH . J 5 HOH AAA 7 307 75 HOH HOH . J 5 HOH AAA 8 308 24 HOH HOH . J 5 HOH AAA 9 309 85 HOH HOH . J 5 HOH AAA 10 310 46 HOH HOH . J 5 HOH AAA 11 311 69 HOH HOH . J 5 HOH AAA 12 312 130 HOH HOH . J 5 HOH AAA 13 313 29 HOH HOH . J 5 HOH AAA 14 314 50 HOH HOH . J 5 HOH AAA 15 315 4 HOH HOH . J 5 HOH AAA 16 316 128 HOH HOH . J 5 HOH AAA 17 317 53 HOH HOH . J 5 HOH AAA 18 318 5 HOH HOH . J 5 HOH AAA 19 319 101 HOH HOH . J 5 HOH AAA 20 320 23 HOH HOH . J 5 HOH AAA 21 321 99 HOH HOH . J 5 HOH AAA 22 322 96 HOH HOH . J 5 HOH AAA 23 323 134 HOH HOH . J 5 HOH AAA 24 324 110 HOH HOH . J 5 HOH AAA 25 325 20 HOH HOH . J 5 HOH AAA 26 326 74 HOH HOH . J 5 HOH AAA 27 327 100 HOH HOH . J 5 HOH AAA 28 328 6 HOH HOH . J 5 HOH AAA 29 329 55 HOH HOH . J 5 HOH AAA 30 330 41 HOH HOH . J 5 HOH AAA 31 331 36 HOH HOH . J 5 HOH AAA 32 332 57 HOH HOH . J 5 HOH AAA 33 333 44 HOH HOH . J 5 HOH AAA 34 334 25 HOH HOH . J 5 HOH AAA 35 335 77 HOH HOH . J 5 HOH AAA 36 336 2 HOH HOH . J 5 HOH AAA 37 337 70 HOH HOH . J 5 HOH AAA 38 338 71 HOH HOH . J 5 HOH AAA 39 339 81 HOH HOH . J 5 HOH AAA 40 340 80 HOH HOH . J 5 HOH AAA 41 341 16 HOH HOH . J 5 HOH AAA 42 342 3 HOH HOH . J 5 HOH AAA 43 343 15 HOH HOH . J 5 HOH AAA 44 344 7 HOH HOH . J 5 HOH AAA 45 345 103 HOH HOH . J 5 HOH AAA 46 346 12 HOH HOH . J 5 HOH AAA 47 347 67 HOH HOH . J 5 HOH AAA 48 348 33 HOH HOH . J 5 HOH AAA 49 349 22 HOH HOH . J 5 HOH AAA 50 350 87 HOH HOH . J 5 HOH AAA 51 351 1 HOH HOH . J 5 HOH AAA 52 352 45 HOH HOH . J 5 HOH AAA 53 353 17 HOH HOH . J 5 HOH AAA 54 354 98 HOH HOH . J 5 HOH AAA 55 355 37 HOH HOH . J 5 HOH AAA 56 356 10 HOH HOH . J 5 HOH AAA 57 357 91 HOH HOH . J 5 HOH AAA 58 358 88 HOH HOH . J 5 HOH AAA 59 359 30 HOH HOH . J 5 HOH AAA 60 360 59 HOH HOH . J 5 HOH AAA 61 361 42 HOH HOH . J 5 HOH AAA 62 362 14 HOH HOH . J 5 HOH AAA 63 363 84 HOH HOH . J 5 HOH AAA 64 364 13 HOH HOH . J 5 HOH AAA 65 365 26 HOH HOH . J 5 HOH AAA 66 366 151 HOH HOH . J 5 HOH AAA 67 367 63 HOH HOH . J 5 HOH AAA 68 368 82 HOH HOH . J 5 HOH AAA 69 369 65 HOH HOH . J 5 HOH AAA 70 370 149 HOH HOH . J 5 HOH AAA 71 371 60 HOH HOH . J 5 HOH AAA 72 372 92 HOH HOH . J 5 HOH AAA 73 373 106 HOH HOH . J 5 HOH AAA 74 374 58 HOH HOH . J 5 HOH AAA 75 375 54 HOH HOH . J 5 HOH AAA 76 376 66 HOH HOH . J 5 HOH AAA 77 377 136 HOH HOH . J 5 HOH AAA 78 378 107 HOH HOH . J 5 HOH AAA 79 379 32 HOH HOH . J 5 HOH AAA 80 380 94 HOH HOH . J 5 HOH AAA 81 381 72 HOH HOH . J 5 HOH AAA 82 382 34 HOH HOH . J 5 HOH AAA 83 383 78 HOH HOH . J 5 HOH AAA 84 384 127 HOH HOH . J 5 HOH AAA 85 385 8 HOH HOH . J 5 HOH AAA 86 386 95 HOH HOH . J 5 HOH AAA 87 387 68 HOH HOH . J 5 HOH AAA 88 388 83 HOH HOH . J 5 HOH AAA 89 389 104 HOH HOH . J 5 HOH AAA 90 390 19 HOH HOH . J 5 HOH AAA 91 391 143 HOH HOH . J 5 HOH AAA 92 392 48 HOH HOH . J 5 HOH AAA 93 393 140 HOH HOH . J 5 HOH AAA 94 394 89 HOH HOH . J 5 HOH AAA 95 395 90 HOH HOH . J 5 HOH AAA 96 396 76 HOH HOH . J 5 HOH AAA 97 397 49 HOH HOH . J 5 HOH AAA 98 398 133 HOH HOH . J 5 HOH AAA 99 399 40 HOH HOH . J 5 HOH AAA 100 400 126 HOH HOH . J 5 HOH AAA 101 401 150 HOH HOH . J 5 HOH AAA 102 402 93 HOH HOH . J 5 HOH AAA 103 403 39 HOH HOH . J 5 HOH AAA 104 404 141 HOH HOH . J 5 HOH AAA 105 405 86 HOH HOH . J 5 HOH AAA 106 406 64 HOH HOH . J 5 HOH AAA 107 407 43 HOH HOH . J 5 HOH AAA 108 408 51 HOH HOH . J 5 HOH AAA 109 409 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.292 _atom_site.Cartn_y -13.874 _atom_site.Cartn_z 12.998 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.17 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #