data_8BPP # _model_server_result.job_id AgTuPlnXIlIOx20NpaXfWQ _model_server_result.datetime_utc '2024-11-16 10:00:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8BPP # _exptl.entry_id 8BPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.02 _cell.angle_gamma 90 _cell.entry_id 8BPP _cell.length_a 128.488 _cell.length_b 142.069 _cell.length_c 87.871 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 8BPP _atom_sites.fract_transf_matrix[1][1] 0.007783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002382 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FMN A 1 401 384 FMN FMN . E 2 FMN B 1 401 384 FMN FMN . F 2 FMN C 1 401 384 FMN FMN . G 3 HOH A 1 501 16 HOH HOH . G 3 HOH A 2 502 30 HOH HOH . G 3 HOH A 3 503 28 HOH HOH . G 3 HOH A 4 504 11 HOH HOH . G 3 HOH A 5 505 31 HOH HOH . G 3 HOH A 6 506 20 HOH HOH . G 3 HOH A 7 507 3 HOH HOH . G 3 HOH A 8 508 23 HOH HOH . G 3 HOH A 9 509 2 HOH HOH . G 3 HOH A 10 510 12 HOH HOH . G 3 HOH A 11 511 6 HOH HOH . G 3 HOH A 12 512 14 HOH HOH . G 3 HOH A 13 513 1 HOH HOH . H 3 HOH B 1 501 15 HOH HOH . H 3 HOH B 2 502 5 HOH HOH . H 3 HOH B 3 503 10 HOH HOH . H 3 HOH B 4 504 25 HOH HOH . H 3 HOH B 5 505 26 HOH HOH . H 3 HOH B 6 506 9 HOH HOH . H 3 HOH B 7 507 34 HOH HOH . H 3 HOH B 8 508 27 HOH HOH . H 3 HOH B 9 509 13 HOH HOH . H 3 HOH B 10 510 35 HOH HOH . H 3 HOH B 11 511 32 HOH HOH . I 3 HOH C 1 501 4 HOH HOH . I 3 HOH C 2 502 22 HOH HOH . I 3 HOH C 3 503 19 HOH HOH . I 3 HOH C 4 504 29 HOH HOH . I 3 HOH C 5 505 18 HOH HOH . I 3 HOH C 6 506 24 HOH HOH . I 3 HOH C 7 507 21 HOH HOH . I 3 HOH C 8 508 8 HOH HOH . I 3 HOH C 9 509 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 -2.999 9.953 34.065 1 40.42 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . D 2 -2.304 10.727 33.004 1 41.36 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . D 2 -2.86 10.965 31.98 1 42.19 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . D 2 -0.908 11.203 33.23 1 41.19 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . D 2 -0.237 10.902 34.494 1 39.6 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . D 2 0.87 11.272 34.691 1 44.28 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . D 2 -0.965 10.107 35.568 1 41.16 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . D 2 -0.297 9.808 36.831 1 38.5 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . D 2 -0.963 8.914 37.836 1 42.31 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . D 2 -0.27 8.527 39 1 44.93 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . D 2 -0.896 7.691 39.938 1 44.75 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . D 2 0.032 7.381 41.145 1 47.16 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . D 2 -2.213 7.24 39.715 1 42.33 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . D 2 -2.963 6.318 40.706 1 40.79 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . D 2 -2.906 7.625 38.557 1 42.99 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . D 2 -2.281 8.465 37.613 1 44.57 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . D 2 -3.014 8.884 36.371 1 43.67 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . D 2 -2.321 9.651 35.337 1 41.12 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . D 2 -4.392 8.411 36.126 1 46.7 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . D 2 -4.319 7.051 35.4 1 50.75 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . D 2 -3.779 7.22 34.128 1 44.45 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . D 2 -5.712 6.443 35.273 1 55.37 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . D 2 -6.474 7.207 34.393 1 60.45 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . D 2 -6.408 6.422 36.636 1 46.91 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . D 2 -5.581 5.805 37.578 1 43.39 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . D 2 -7.712 5.639 36.496 1 48.32 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . D 2 -7.904 4.823 37.636 1 57 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . D 2 -8.013 3.173 37.423 1 58.6 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . D 2 -6.69 2.537 37.773 1 37.6 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . D 2 -8.352 2.872 35.983 1 53.66 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . D 2 -9.097 2.626 38.328 1 70.49 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #