data_8BPS # _model_server_result.job_id d9gdCj6PQ5Ut8iglLFLkBA _model_server_result.datetime_utc '2024-11-03 23:56:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2303}' # _entry.id 8BPS # _exptl.entry_id 8BPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BPS _cell.length_a 138.829 _cell.length_b 138.829 _cell.length_c 138.829 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall 'P 4acd 2ab 3' _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -z,x+1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 0 69.4145 69.4145 3 'crystal symmetry operation' 11_455 y-1/2,-z+1/2,-x 0 1 0 0 0 -1 -1 0 0 -69.4145 69.4145 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 107 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 2045 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 300 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 2238 _struct_conn.ptnr2_symmetry 8_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.082 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8BPS _atom_sites.fract_transf_matrix[1][1] 0.007203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 2301 2301 GOL GOL . C 2 GOL A 1 2302 2401 GOL GOL . D 2 GOL A 1 2303 2501 GOL GOL . E 2 GOL A 1 2304 2601 GOL GOL . F 2 GOL A 1 2305 2701 GOL GOL . G 2 GOL A 1 2306 2801 GOL GOL . H 3 HOH A 1 2401 8 HOH HOH . H 3 HOH A 2 2402 41 HOH HOH . H 3 HOH A 3 2403 106 HOH HOH . H 3 HOH A 4 2404 88 HOH HOH . H 3 HOH A 5 2405 34 HOH HOH . H 3 HOH A 6 2406 1 HOH HOH . H 3 HOH A 7 2407 40 HOH HOH . H 3 HOH A 8 2408 2 HOH HOH . H 3 HOH A 9 2409 37 HOH HOH . H 3 HOH A 10 2410 64 HOH HOH . H 3 HOH A 11 2411 5 HOH HOH . H 3 HOH A 12 2412 36 HOH HOH . H 3 HOH A 13 2413 86 HOH HOH . H 3 HOH A 14 2414 35 HOH HOH . H 3 HOH A 15 2415 108 HOH HOH . H 3 HOH A 16 2416 136 HOH HOH . H 3 HOH A 17 2417 128 HOH HOH . H 3 HOH A 18 2418 43 HOH HOH . H 3 HOH A 19 2419 63 HOH HOH . H 3 HOH A 20 2420 7 HOH HOH . H 3 HOH A 21 2421 144 HOH HOH . H 3 HOH A 22 2422 20 HOH HOH . H 3 HOH A 23 2423 11 HOH HOH . H 3 HOH A 24 2424 104 HOH HOH . H 3 HOH A 25 2425 80 HOH HOH . H 3 HOH A 26 2426 44 HOH HOH . H 3 HOH A 27 2427 30 HOH HOH . H 3 HOH A 28 2428 13 HOH HOH . H 3 HOH A 29 2429 90 HOH HOH . H 3 HOH A 30 2430 142 HOH HOH . H 3 HOH A 31 2431 16 HOH HOH . H 3 HOH A 32 2432 14 HOH HOH . H 3 HOH A 33 2433 115 HOH HOH . H 3 HOH A 34 2434 24 HOH HOH . H 3 HOH A 35 2435 109 HOH HOH . H 3 HOH A 36 2436 66 HOH HOH . H 3 HOH A 37 2437 60 HOH HOH . H 3 HOH A 38 2438 52 HOH HOH . H 3 HOH A 39 2439 9 HOH HOH . H 3 HOH A 40 2440 87 HOH HOH . H 3 HOH A 41 2441 15 HOH HOH . H 3 HOH A 42 2442 10 HOH HOH . H 3 HOH A 43 2443 27 HOH HOH . H 3 HOH A 44 2444 46 HOH HOH . H 3 HOH A 45 2445 48 HOH HOH . H 3 HOH A 46 2446 62 HOH HOH . H 3 HOH A 47 2447 21 HOH HOH . H 3 HOH A 48 2448 17 HOH HOH . H 3 HOH A 49 2449 6 HOH HOH . H 3 HOH A 50 2450 3 HOH HOH . H 3 HOH A 51 2451 29 HOH HOH . H 3 HOH A 52 2452 59 HOH HOH . H 3 HOH A 53 2453 83 HOH HOH . H 3 HOH A 54 2454 117 HOH HOH . H 3 HOH A 55 2455 4 HOH HOH . H 3 HOH A 56 2456 42 HOH HOH . H 3 HOH A 57 2457 26 HOH HOH . H 3 HOH A 58 2458 18 HOH HOH . H 3 HOH A 59 2459 69 HOH HOH . H 3 HOH A 60 2460 54 HOH HOH . H 3 HOH A 61 2461 45 HOH HOH . H 3 HOH A 62 2462 125 HOH HOH . H 3 HOH A 63 2463 131 HOH HOH . H 3 HOH A 64 2464 28 HOH HOH . H 3 HOH A 65 2465 67 HOH HOH . H 3 HOH A 66 2466 50 HOH HOH . H 3 HOH A 67 2467 57 HOH HOH . H 3 HOH A 68 2468 31 HOH HOH . H 3 HOH A 69 2469 126 HOH HOH . H 3 HOH A 70 2470 89 HOH HOH . H 3 HOH A 71 2471 12 HOH HOH . H 3 HOH A 72 2472 95 HOH HOH . H 3 HOH A 73 2473 72 HOH HOH . H 3 HOH A 74 2474 55 HOH HOH . H 3 HOH A 75 2475 25 HOH HOH . H 3 HOH A 76 2476 70 HOH HOH . H 3 HOH A 77 2477 114 HOH HOH . H 3 HOH A 78 2478 81 HOH HOH . H 3 HOH A 79 2479 23 HOH HOH . H 3 HOH A 80 2480 53 HOH HOH . H 3 HOH A 81 2481 127 HOH HOH . H 3 HOH A 82 2482 119 HOH HOH . H 3 HOH A 83 2483 139 HOH HOH . H 3 HOH A 84 2484 120 HOH HOH . H 3 HOH A 85 2485 97 HOH HOH . H 3 HOH A 86 2486 61 HOH HOH . H 3 HOH A 87 2487 68 HOH HOH . H 3 HOH A 88 2488 133 HOH HOH . H 3 HOH A 89 2489 47 HOH HOH . H 3 HOH A 90 2490 111 HOH HOH . H 3 HOH A 91 2491 116 HOH HOH . H 3 HOH A 92 2492 140 HOH HOH . H 3 HOH A 93 2493 113 HOH HOH . H 3 HOH A 94 2494 39 HOH HOH . H 3 HOH A 95 2495 103 HOH HOH . H 3 HOH A 96 2496 121 HOH HOH . H 3 HOH A 97 2497 71 HOH HOH . H 3 HOH A 98 2498 138 HOH HOH . H 3 HOH A 99 2499 130 HOH HOH . H 3 HOH A 100 2500 101 HOH HOH . H 3 HOH A 101 2501 137 HOH HOH . H 3 HOH A 102 2502 76 HOH HOH . H 3 HOH A 103 2503 98 HOH HOH . H 3 HOH A 104 2504 56 HOH HOH . H 3 HOH A 105 2505 102 HOH HOH . H 3 HOH A 106 2506 19 HOH HOH . H 3 HOH A 107 2507 22 HOH HOH . H 3 HOH A 108 2508 77 HOH HOH . H 3 HOH A 109 2509 91 HOH HOH . H 3 HOH A 110 2510 51 HOH HOH . H 3 HOH A 111 2511 84 HOH HOH . H 3 HOH A 112 2512 65 HOH HOH . H 3 HOH A 113 2513 82 HOH HOH . H 3 HOH A 114 2514 124 HOH HOH . H 3 HOH A 115 2515 75 HOH HOH . H 3 HOH A 116 2516 134 HOH HOH . H 3 HOH A 117 2517 58 HOH HOH . H 3 HOH A 118 2518 93 HOH HOH . H 3 HOH A 119 2519 33 HOH HOH . H 3 HOH A 120 2520 49 HOH HOH . H 3 HOH A 121 2521 73 HOH HOH . H 3 HOH A 122 2522 32 HOH HOH . H 3 HOH A 123 2523 85 HOH HOH . H 3 HOH A 124 2524 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -27.412 35.066 25.956 1 74.43 ? C1 GOL 2303 A 1 HETATM 2 O O1 GOL . . . D 2 -26.255 34.33 25.418 1 68.74 ? O1 GOL 2303 A 1 HETATM 3 C C2 GOL . . . D 2 -28.031 36.1 24.871 1 76.15 ? C2 GOL 2303 A 1 HETATM 4 O O2 GOL . . . D 2 -28.176 37.39 25.395 1 76.58 ? O2 GOL 2303 A 1 HETATM 5 C C3 GOL . . . D 2 -27.07 35.981 23.647 1 77.94 ? C3 GOL 2303 A 1 HETATM 6 O O3 GOL . . . D 2 -27.2 37.116 22.753 1 80.54 ? O3 GOL 2303 A 1 HETATM 7 H H11 GOL . . . D 2 -27.173 35.574 26.747 1 89.25 ? H11 GOL 2303 A 1 HETATM 8 H H12 GOL . . . D 2 -28.12 34.464 26.23 1 89.25 ? H12 GOL 2303 A 1 HETATM 9 H HO1 GOL . . . D 2 -25.879 33.946 26.071 1 82.42 ? HO1 GOL 2303 A 1 HETATM 10 H H2 GOL . . . D 2 -28.933 35.861 24.604 1 91.31 ? H2 GOL 2303 A 1 HETATM 11 H HO2 GOL . . . D 2 -27.634 37.898 25.001 1 91.84 ? HO2 GOL 2303 A 1 HETATM 12 H H31 GOL . . . D 2 -27.265 35.139 23.207 1 93.47 ? H31 GOL 2303 A 1 HETATM 13 H H32 GOL . . . D 2 -26.169 35.886 23.995 1 93.47 ? H32 GOL 2303 A 1 HETATM 14 H HO3 GOL . . . D 2 -26.683 37.734 23.014 1 96.59 ? HO3 GOL 2303 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #