data_8BPU # _model_server_result.job_id ihFyf9v7UWNbHijlq8NxKw _model_server_result.datetime_utc '2024-11-18 00:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8BPU # _exptl.entry_id 8BPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BPU _cell.length_a 78.36 _cell.length_b 78.36 _cell.length_c 37.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A OD1 ASP 18 AAA ASP 18 1_555 F RU2 R2U . AAA R2U 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc2 A OD2 ASP 18 AAA ASP 18 1_555 F RU1 R2U . AAA R2U 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc3 A OD2 ASP 18 AAA ASP 18 1_555 F RU2 R2U . AAA R2U 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc4 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc7 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 A OD1 ASP 101 AAA ASP 101 1_555 D RU2 R2I . AAA R2I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 A OD2 ASP 101 AAA ASP 101 1_555 D RU1 R2I . AAA R2I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 A OD1 ASP 119 AAA ASP 119 1_555 E RU1 R2U . AAA R2U 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc11 A OD1 ASP 119 AAA ASP 119 1_555 E RU2 R2U . AAA R2U 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 A OD2 ASP 119 AAA ASP 119 1_555 E RU1 R2U . AAA R2U 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc13 B NA NA . AAA NA 201 1_555 G O HOH . AAA HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc14 B NA NA . AAA NA 201 1_555 G O HOH . AAA HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc15 D RU2 R2I . AAA R2I 203 1_555 G O HOH . AAA HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc16 D RU1 R2I . AAA R2I 203 1_555 G O HOH . AAA HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 8BPU _atom_sites.fract_transf_matrix[1][1] 0.012762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA AAA 1 201 131 NA NA . C 3 EPE AAA 1 202 133 EPE EPE . D 4 R2I AAA 1 203 1 R2I TM5 . E 5 R2U AAA 1 204 1 R2U DWR . F 5 R2U AAA 1 205 1 R2U DWR . G 6 HOH AAA 1 301 60 HOH HOH . G 6 HOH AAA 2 302 27 HOH HOH . G 6 HOH AAA 3 303 68 HOH HOH . G 6 HOH AAA 4 304 33 HOH HOH . G 6 HOH AAA 5 305 26 HOH HOH . G 6 HOH AAA 6 306 40 HOH HOH . G 6 HOH AAA 7 307 69 HOH HOH . G 6 HOH AAA 8 308 45 HOH HOH . G 6 HOH AAA 9 309 8 HOH HOH . G 6 HOH AAA 10 310 31 HOH HOH . G 6 HOH AAA 11 311 59 HOH HOH . G 6 HOH AAA 12 312 20 HOH HOH . G 6 HOH AAA 13 313 56 HOH HOH . G 6 HOH AAA 14 314 34 HOH HOH . G 6 HOH AAA 15 315 30 HOH HOH . G 6 HOH AAA 16 316 46 HOH HOH . G 6 HOH AAA 17 317 7 HOH HOH . G 6 HOH AAA 18 318 16 HOH HOH . G 6 HOH AAA 19 319 1 HOH HOH . G 6 HOH AAA 20 320 13 HOH HOH . G 6 HOH AAA 21 321 23 HOH HOH . G 6 HOH AAA 22 322 95 HOH HOH . G 6 HOH AAA 23 323 2 HOH HOH . G 6 HOH AAA 24 324 96 HOH HOH . G 6 HOH AAA 25 325 19 HOH HOH . G 6 HOH AAA 26 326 49 HOH HOH . G 6 HOH AAA 27 327 18 HOH HOH . G 6 HOH AAA 28 328 47 HOH HOH . G 6 HOH AAA 29 329 25 HOH HOH . G 6 HOH AAA 30 330 79 HOH HOH . G 6 HOH AAA 31 331 55 HOH HOH . G 6 HOH AAA 32 332 37 HOH HOH . G 6 HOH AAA 33 333 57 HOH HOH . G 6 HOH AAA 34 334 22 HOH HOH . G 6 HOH AAA 35 335 6 HOH HOH . G 6 HOH AAA 36 336 92 HOH HOH . G 6 HOH AAA 37 337 17 HOH HOH . G 6 HOH AAA 38 338 36 HOH HOH . G 6 HOH AAA 39 339 14 HOH HOH . G 6 HOH AAA 40 340 63 HOH HOH . G 6 HOH AAA 41 341 82 HOH HOH . G 6 HOH AAA 42 342 12 HOH HOH . G 6 HOH AAA 43 343 93 HOH HOH . G 6 HOH AAA 44 344 51 HOH HOH . G 6 HOH AAA 45 345 72 HOH HOH . G 6 HOH AAA 46 346 5 HOH HOH . G 6 HOH AAA 47 347 44 HOH HOH . G 6 HOH AAA 48 348 94 HOH HOH . G 6 HOH AAA 49 349 35 HOH HOH . G 6 HOH AAA 50 350 29 HOH HOH . G 6 HOH AAA 51 351 28 HOH HOH . G 6 HOH AAA 52 352 98 HOH HOH . G 6 HOH AAA 53 353 64 HOH HOH . G 6 HOH AAA 54 354 86 HOH HOH . G 6 HOH AAA 55 355 76 HOH HOH . G 6 HOH AAA 56 356 77 HOH HOH . G 6 HOH AAA 57 357 52 HOH HOH . G 6 HOH AAA 58 358 39 HOH HOH . G 6 HOH AAA 59 359 11 HOH HOH . G 6 HOH AAA 60 360 48 HOH HOH . G 6 HOH AAA 61 361 58 HOH HOH . G 6 HOH AAA 62 362 83 HOH HOH . G 6 HOH AAA 63 363 89 HOH HOH . G 6 HOH AAA 64 364 74 HOH HOH . G 6 HOH AAA 65 365 97 HOH HOH . G 6 HOH AAA 66 366 88 HOH HOH . G 6 HOH AAA 67 367 50 HOH HOH . G 6 HOH AAA 68 368 38 HOH HOH . G 6 HOH AAA 69 369 90 HOH HOH . G 6 HOH AAA 70 370 70 HOH HOH . G 6 HOH AAA 71 371 100 HOH HOH . G 6 HOH AAA 72 372 32 HOH HOH . G 6 HOH AAA 73 373 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 -9.796 3.144 10.075 0.7 58.54 0 N1 EPE 202 AAA 1 HETATM 2 C C2 EPE . . . C 3 -10.966 2.725 10.869 0.7 57.32 0 C2 EPE 202 AAA 1 HETATM 3 C C3 EPE . . . C 3 -11.622 1.485 10.308 0.7 54.03 0 C3 EPE 202 AAA 1 HETATM 4 N N4 EPE . . . C 3 -10.66 0.391 10.08 0.7 54.52 0 N4 EPE 202 AAA 1 HETATM 5 C C5 EPE . . . C 3 -9.335 0.757 10.602 0.7 54.84 0 C5 EPE 202 AAA 1 HETATM 6 C C6 EPE . . . C 3 -8.832 2.029 9.962 0.7 58.68 0 C6 EPE 202 AAA 1 HETATM 7 C C7 EPE . . . C 3 -11.142 -0.88 10.634 0.7 51.49 0 C7 EPE 202 AAA 1 HETATM 8 C C8 EPE . . . C 3 -10.303 -2.085 10.274 0.7 50.25 0 C8 EPE 202 AAA 1 HETATM 9 O O8 EPE . . . C 3 -11.044 -3.278 10.422 0.7 47.54 0 O8 EPE 202 AAA 1 HETATM 10 C C9 EPE . . . C 3 -9.145 4.362 10.62 0.7 62.26 0 C9 EPE 202 AAA 1 HETATM 11 C C10 EPE . . . C 3 -10.017 5.615 10.71 0.7 68.28 0 C10 EPE 202 AAA 1 HETATM 12 S S EPE . . . C 3 -9.308 6.914 11.699 0.7 76.63 0 S EPE 202 AAA 1 HETATM 13 O O1S EPE . . . C 3 -7.993 6.306 12.266 0.7 72.76 0 O1S EPE 202 AAA 1 HETATM 14 O O2S EPE . . . C 3 -8.973 7.983 10.8 0.7 68.95 0 O2S EPE 202 AAA 1 HETATM 15 O O3S EPE . . . C 3 -10.229 7.176 12.772 0.7 70.44 0 O3S EPE 202 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #