data_8BPU # _model_server_result.job_id CE8hzJ2aiKAhZEMKv63PoQ _model_server_result.datetime_utc '2024-11-18 00:13:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 8BPU # _exptl.entry_id 8BPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.184 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Ru2-(OH)6 cluster' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BPU _cell.length_a 78.36 _cell.length_b 78.36 _cell.length_c 37.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A OD1 ASP 18 AAA ASP 18 1_555 F RU2 R2U . AAA R2U 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc2 A OD2 ASP 18 AAA ASP 18 1_555 F RU1 R2U . AAA R2U 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc3 A OD2 ASP 18 AAA ASP 18 1_555 F RU2 R2U . AAA R2U 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc4 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc7 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 A OD1 ASP 101 AAA ASP 101 1_555 D RU2 R2I . AAA R2I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 A OD2 ASP 101 AAA ASP 101 1_555 D RU1 R2I . AAA R2I 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 A OD1 ASP 119 AAA ASP 119 1_555 E RU1 R2U . AAA R2U 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc11 A OD1 ASP 119 AAA ASP 119 1_555 E RU2 R2U . AAA R2U 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 A OD2 ASP 119 AAA ASP 119 1_555 E RU1 R2U . AAA R2U 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc13 B NA NA . AAA NA 201 1_555 G O HOH . AAA HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc14 B NA NA . AAA NA 201 1_555 G O HOH . AAA HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc15 D RU2 R2I . AAA R2I 203 1_555 G O HOH . AAA HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc16 D RU1 R2I . AAA R2I 203 1_555 G O HOH . AAA HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? # _chem_comp.formula 'H6 O6 Ru2' _chem_comp.formula_weight 304.184 _chem_comp.id R2U _chem_comp.mon_nstd_flag . _chem_comp.name 'Ru2-(OH)6 cluster' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 RU1 R2U sing 353 n n O4 RU2 R2U sing 354 n n RU1 O5 R2U sing 355 n n RU1 RU2 R2U sing 356 n n RU1 O7 R2U sing 357 n n RU2 O6 R2U sing 358 n n RU2 O8 R2U sing 359 n n O3 H1 R2U sing 360 n n O4 H2 R2U sing 361 n n O5 H3 R2U sing 362 n n O6 H4 R2U sing 363 n n O7 H5 R2U sing 364 n n O8 H6 R2U sing 365 n n # _atom_sites.entry_id 8BPU _atom_sites.fract_transf_matrix[1][1] 0.012762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA AAA 1 201 131 NA NA . C 3 EPE AAA 1 202 133 EPE EPE . D 4 R2I AAA 1 203 1 R2I TM5 . E 5 R2U AAA 1 204 1 R2U DWR . F 5 R2U AAA 1 205 1 R2U DWR . G 6 HOH AAA 1 301 60 HOH HOH . G 6 HOH AAA 2 302 27 HOH HOH . G 6 HOH AAA 3 303 68 HOH HOH . G 6 HOH AAA 4 304 33 HOH HOH . G 6 HOH AAA 5 305 26 HOH HOH . G 6 HOH AAA 6 306 40 HOH HOH . G 6 HOH AAA 7 307 69 HOH HOH . G 6 HOH AAA 8 308 45 HOH HOH . G 6 HOH AAA 9 309 8 HOH HOH . G 6 HOH AAA 10 310 31 HOH HOH . G 6 HOH AAA 11 311 59 HOH HOH . G 6 HOH AAA 12 312 20 HOH HOH . G 6 HOH AAA 13 313 56 HOH HOH . G 6 HOH AAA 14 314 34 HOH HOH . G 6 HOH AAA 15 315 30 HOH HOH . G 6 HOH AAA 16 316 46 HOH HOH . G 6 HOH AAA 17 317 7 HOH HOH . G 6 HOH AAA 18 318 16 HOH HOH . G 6 HOH AAA 19 319 1 HOH HOH . G 6 HOH AAA 20 320 13 HOH HOH . G 6 HOH AAA 21 321 23 HOH HOH . G 6 HOH AAA 22 322 95 HOH HOH . G 6 HOH AAA 23 323 2 HOH HOH . G 6 HOH AAA 24 324 96 HOH HOH . G 6 HOH AAA 25 325 19 HOH HOH . G 6 HOH AAA 26 326 49 HOH HOH . G 6 HOH AAA 27 327 18 HOH HOH . G 6 HOH AAA 28 328 47 HOH HOH . G 6 HOH AAA 29 329 25 HOH HOH . G 6 HOH AAA 30 330 79 HOH HOH . G 6 HOH AAA 31 331 55 HOH HOH . G 6 HOH AAA 32 332 37 HOH HOH . G 6 HOH AAA 33 333 57 HOH HOH . G 6 HOH AAA 34 334 22 HOH HOH . G 6 HOH AAA 35 335 6 HOH HOH . G 6 HOH AAA 36 336 92 HOH HOH . G 6 HOH AAA 37 337 17 HOH HOH . G 6 HOH AAA 38 338 36 HOH HOH . G 6 HOH AAA 39 339 14 HOH HOH . G 6 HOH AAA 40 340 63 HOH HOH . G 6 HOH AAA 41 341 82 HOH HOH . G 6 HOH AAA 42 342 12 HOH HOH . G 6 HOH AAA 43 343 93 HOH HOH . G 6 HOH AAA 44 344 51 HOH HOH . G 6 HOH AAA 45 345 72 HOH HOH . G 6 HOH AAA 46 346 5 HOH HOH . G 6 HOH AAA 47 347 44 HOH HOH . G 6 HOH AAA 48 348 94 HOH HOH . G 6 HOH AAA 49 349 35 HOH HOH . G 6 HOH AAA 50 350 29 HOH HOH . G 6 HOH AAA 51 351 28 HOH HOH . G 6 HOH AAA 52 352 98 HOH HOH . G 6 HOH AAA 53 353 64 HOH HOH . G 6 HOH AAA 54 354 86 HOH HOH . G 6 HOH AAA 55 355 76 HOH HOH . G 6 HOH AAA 56 356 77 HOH HOH . G 6 HOH AAA 57 357 52 HOH HOH . G 6 HOH AAA 58 358 39 HOH HOH . G 6 HOH AAA 59 359 11 HOH HOH . G 6 HOH AAA 60 360 48 HOH HOH . G 6 HOH AAA 61 361 58 HOH HOH . G 6 HOH AAA 62 362 83 HOH HOH . G 6 HOH AAA 63 363 89 HOH HOH . G 6 HOH AAA 64 364 74 HOH HOH . G 6 HOH AAA 65 365 97 HOH HOH . G 6 HOH AAA 66 366 88 HOH HOH . G 6 HOH AAA 67 367 50 HOH HOH . G 6 HOH AAA 68 368 38 HOH HOH . G 6 HOH AAA 69 369 90 HOH HOH . G 6 HOH AAA 70 370 70 HOH HOH . G 6 HOH AAA 71 371 100 HOH HOH . G 6 HOH AAA 72 372 32 HOH HOH . G 6 HOH AAA 73 373 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 R2U . . . F 5 -26.407 -18.238 -15.197 0.2 34.92 0 O3 R2U 205 AAA 1 HETATM 2 O O4 R2U . . . F 5 -27.435 -16.423 -15.209 0.2 38.7 0 O4 R2U 205 AAA 1 HETATM 3 O O5 R2U . . . F 5 -23.965 -17.199 -16.372 0.2 31.12 0 O5 R2U 205 AAA 1 HETATM 4 O O6 R2U . . . F 5 -25.228 -15.478 -16.768 0.2 36.33 0 O6 R2U 205 AAA 1 HETATM 5 RU RU1 R2U . . . F 5 -24.682 -17.464 -14.502 0.2 34.87 0 RU1 R2U 205 AAA 1 HETATM 6 RU RU2 R2U . . . F 5 -25.709 -15.464 -14.805 0.2 33.38 0 RU2 R2U 205 AAA 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #