data_8BQA # _model_server_result.job_id QNDLAnVelGDKrPmtPqSPAw _model_server_result.datetime_utc '2024-11-13 09:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8BQA # _exptl.entry_id 8BQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-xylopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.427 _cell.angle_gamma 90 _cell.entry_id 8BQA _cell.length_a 45.49 _cell.length_b 51.83 _cell.length_c 64.56 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE2 GLU 220 AAA GLU 220 1_555 D C1 YLL . AAA YLL 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale2 B O6 RBH . AAA RBH 401 1_555 C C1 XYS . AAA XYS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale3 B C1 RBH . AAA RBH 401 1_555 D O4 YLL . AAA YLL 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id XYS _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-xylopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-xylose;D-xylose;xylose;XYLOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XYS sing 417 n n C1 O1 XYS sing 418 n n C1 O5 XYS sing 419 n n C1 H1 XYS sing 420 n n C2 C3 XYS sing 421 n n C2 O2 XYS sing 422 n n C2 H2 XYS sing 423 n n C3 C4 XYS sing 424 n n C3 O3 XYS sing 425 n n C3 H3 XYS sing 426 n n C4 C5 XYS sing 427 n n C4 O4 XYS sing 428 n n C4 H4 XYS sing 429 n n C5 O5 XYS sing 430 n n C5 H51 XYS sing 431 n n C5 H52 XYS sing 432 n n O1 HO1 XYS sing 433 n n O2 HO2 XYS sing 434 n n O3 HO3 XYS sing 435 n n O4 HO4 XYS sing 436 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version XYS DXylpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 XYS a-D-xylopyranose 'COMMON NAME' GMML 1 XYS a-D-Xylp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 XYS Xyl 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8BQA _atom_sites.fract_transf_matrix[1][1] 0.021983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBH AAA 1 401 301 RBH BGZ . C 3 XYS AAA 1 402 401 XYS XYS . D 4 YLL AAA 1 403 501 YLL YLL . E 5 HOH AAA 1 501 19 HOH HOH . E 5 HOH AAA 2 502 149 HOH HOH . E 5 HOH AAA 3 503 181 HOH HOH . E 5 HOH AAA 4 504 58 HOH HOH . E 5 HOH AAA 5 505 101 HOH HOH . E 5 HOH AAA 6 506 128 HOH HOH . E 5 HOH AAA 7 507 106 HOH HOH . E 5 HOH AAA 8 508 68 HOH HOH . E 5 HOH AAA 9 509 103 HOH HOH . E 5 HOH AAA 10 510 27 HOH HOH . E 5 HOH AAA 11 511 139 HOH HOH . E 5 HOH AAA 12 512 32 HOH HOH . E 5 HOH AAA 13 513 166 HOH HOH . E 5 HOH AAA 14 514 123 HOH HOH . E 5 HOH AAA 15 515 121 HOH HOH . E 5 HOH AAA 16 516 76 HOH HOH . E 5 HOH AAA 17 517 23 HOH HOH . E 5 HOH AAA 18 518 77 HOH HOH . E 5 HOH AAA 19 519 56 HOH HOH . E 5 HOH AAA 20 520 130 HOH HOH . E 5 HOH AAA 21 521 99 HOH HOH . E 5 HOH AAA 22 522 39 HOH HOH . E 5 HOH AAA 23 523 138 HOH HOH . E 5 HOH AAA 24 524 46 HOH HOH . E 5 HOH AAA 25 525 102 HOH HOH . E 5 HOH AAA 26 526 162 HOH HOH . E 5 HOH AAA 27 527 38 HOH HOH . E 5 HOH AAA 28 528 64 HOH HOH . E 5 HOH AAA 29 529 161 HOH HOH . E 5 HOH AAA 30 530 125 HOH HOH . E 5 HOH AAA 31 531 4 HOH HOH . E 5 HOH AAA 32 532 195 HOH HOH . E 5 HOH AAA 33 533 89 HOH HOH . E 5 HOH AAA 34 534 164 HOH HOH . E 5 HOH AAA 35 535 124 HOH HOH . E 5 HOH AAA 36 536 75 HOH HOH . E 5 HOH AAA 37 537 173 HOH HOH . E 5 HOH AAA 38 538 112 HOH HOH . E 5 HOH AAA 39 539 16 HOH HOH . E 5 HOH AAA 40 540 62 HOH HOH . E 5 HOH AAA 41 541 180 HOH HOH . E 5 HOH AAA 42 542 126 HOH HOH . E 5 HOH AAA 43 543 31 HOH HOH . E 5 HOH AAA 44 544 171 HOH HOH . E 5 HOH AAA 45 545 20 HOH HOH . E 5 HOH AAA 46 546 60 HOH HOH . E 5 HOH AAA 47 547 116 HOH HOH . E 5 HOH AAA 48 548 10 HOH HOH . E 5 HOH AAA 49 549 14 HOH HOH . E 5 HOH AAA 50 550 87 HOH HOH . E 5 HOH AAA 51 551 142 HOH HOH . E 5 HOH AAA 52 552 13 HOH HOH . E 5 HOH AAA 53 553 30 HOH HOH . E 5 HOH AAA 54 554 18 HOH HOH . E 5 HOH AAA 55 555 168 HOH HOH . E 5 HOH AAA 56 556 117 HOH HOH . E 5 HOH AAA 57 557 37 HOH HOH . E 5 HOH AAA 58 558 86 HOH HOH . E 5 HOH AAA 59 559 47 HOH HOH . E 5 HOH AAA 60 560 119 HOH HOH . E 5 HOH AAA 61 561 105 HOH HOH . E 5 HOH AAA 62 562 11 HOH HOH . E 5 HOH AAA 63 563 7 HOH HOH . E 5 HOH AAA 64 564 8 HOH HOH . E 5 HOH AAA 65 565 198 HOH HOH . E 5 HOH AAA 66 566 53 HOH HOH . E 5 HOH AAA 67 567 61 HOH HOH . E 5 HOH AAA 68 568 93 HOH HOH . E 5 HOH AAA 69 569 28 HOH HOH . E 5 HOH AAA 70 570 72 HOH HOH . E 5 HOH AAA 71 571 34 HOH HOH . E 5 HOH AAA 72 572 5 HOH HOH . E 5 HOH AAA 73 573 74 HOH HOH . E 5 HOH AAA 74 574 146 HOH HOH . E 5 HOH AAA 75 575 118 HOH HOH . E 5 HOH AAA 76 576 122 HOH HOH . E 5 HOH AAA 77 577 127 HOH HOH . E 5 HOH AAA 78 578 196 HOH HOH . E 5 HOH AAA 79 579 107 HOH HOH . E 5 HOH AAA 80 580 50 HOH HOH . E 5 HOH AAA 81 581 115 HOH HOH . E 5 HOH AAA 82 582 95 HOH HOH . E 5 HOH AAA 83 583 3 HOH HOH . E 5 HOH AAA 84 584 109 HOH HOH . E 5 HOH AAA 85 585 24 HOH HOH . E 5 HOH AAA 86 586 131 HOH HOH . E 5 HOH AAA 87 587 129 HOH HOH . E 5 HOH AAA 88 588 17 HOH HOH . E 5 HOH AAA 89 589 52 HOH HOH . E 5 HOH AAA 90 590 78 HOH HOH . E 5 HOH AAA 91 591 90 HOH HOH . E 5 HOH AAA 92 592 45 HOH HOH . E 5 HOH AAA 93 593 156 HOH HOH . E 5 HOH AAA 94 594 48 HOH HOH . E 5 HOH AAA 95 595 29 HOH HOH . E 5 HOH AAA 96 596 197 HOH HOH . E 5 HOH AAA 97 597 79 HOH HOH . E 5 HOH AAA 98 598 51 HOH HOH . E 5 HOH AAA 99 599 44 HOH HOH . E 5 HOH AAA 100 600 55 HOH HOH . E 5 HOH AAA 101 601 57 HOH HOH . E 5 HOH AAA 102 602 35 HOH HOH . E 5 HOH AAA 103 603 97 HOH HOH . E 5 HOH AAA 104 604 140 HOH HOH . E 5 HOH AAA 105 605 71 HOH HOH . E 5 HOH AAA 106 606 6 HOH HOH . E 5 HOH AAA 107 607 59 HOH HOH . E 5 HOH AAA 108 608 42 HOH HOH . E 5 HOH AAA 109 609 175 HOH HOH . E 5 HOH AAA 110 610 147 HOH HOH . E 5 HOH AAA 111 611 163 HOH HOH . E 5 HOH AAA 112 612 152 HOH HOH . E 5 HOH AAA 113 613 22 HOH HOH . E 5 HOH AAA 114 614 172 HOH HOH . E 5 HOH AAA 115 615 177 HOH HOH . E 5 HOH AAA 116 616 84 HOH HOH . E 5 HOH AAA 117 617 113 HOH HOH . E 5 HOH AAA 118 618 601 HOH HOH . E 5 HOH AAA 119 619 144 HOH HOH . E 5 HOH AAA 120 620 26 HOH HOH . E 5 HOH AAA 121 621 25 HOH HOH . E 5 HOH AAA 122 622 36 HOH HOH . E 5 HOH AAA 123 623 193 HOH HOH . E 5 HOH AAA 124 624 104 HOH HOH . E 5 HOH AAA 125 625 41 HOH HOH . E 5 HOH AAA 126 626 67 HOH HOH . E 5 HOH AAA 127 627 40 HOH HOH . E 5 HOH AAA 128 628 66 HOH HOH . E 5 HOH AAA 129 629 151 HOH HOH . E 5 HOH AAA 130 630 182 HOH HOH . E 5 HOH AAA 131 631 153 HOH HOH . E 5 HOH AAA 132 632 134 HOH HOH . E 5 HOH AAA 133 633 83 HOH HOH . E 5 HOH AAA 134 634 12 HOH HOH . E 5 HOH AAA 135 635 82 HOH HOH . E 5 HOH AAA 136 636 150 HOH HOH . E 5 HOH AAA 137 637 94 HOH HOH . E 5 HOH AAA 138 638 141 HOH HOH . E 5 HOH AAA 139 639 70 HOH HOH . E 5 HOH AAA 140 640 178 HOH HOH . E 5 HOH AAA 141 641 155 HOH HOH . E 5 HOH AAA 142 642 88 HOH HOH . E 5 HOH AAA 143 643 81 HOH HOH . E 5 HOH AAA 144 644 63 HOH HOH . E 5 HOH AAA 145 645 137 HOH HOH . E 5 HOH AAA 146 646 69 HOH HOH . E 5 HOH AAA 147 647 33 HOH HOH . E 5 HOH AAA 148 648 73 HOH HOH . E 5 HOH AAA 149 649 9 HOH HOH . E 5 HOH AAA 150 650 159 HOH HOH . E 5 HOH AAA 151 651 170 HOH HOH . E 5 HOH AAA 152 652 15 HOH HOH . E 5 HOH AAA 153 653 49 HOH HOH . E 5 HOH AAA 154 654 54 HOH HOH . E 5 HOH AAA 155 655 65 HOH HOH . E 5 HOH AAA 156 656 184 HOH HOH . E 5 HOH AAA 157 657 98 HOH HOH . E 5 HOH AAA 158 658 133 HOH HOH . E 5 HOH AAA 159 659 1 HOH HOH . E 5 HOH AAA 160 660 111 HOH HOH . E 5 HOH AAA 161 661 21 HOH HOH . E 5 HOH AAA 162 662 92 HOH HOH . E 5 HOH AAA 163 663 100 HOH HOH . E 5 HOH AAA 164 664 154 HOH HOH . E 5 HOH AAA 165 665 80 HOH HOH . E 5 HOH AAA 166 666 110 HOH HOH . E 5 HOH AAA 167 667 2 HOH HOH . E 5 HOH AAA 168 668 183 HOH HOH . E 5 HOH AAA 169 669 145 HOH HOH . E 5 HOH AAA 170 670 143 HOH HOH . E 5 HOH AAA 171 671 189 HOH HOH . E 5 HOH AAA 172 672 186 HOH HOH . E 5 HOH AAA 173 673 165 HOH HOH . E 5 HOH AAA 174 674 174 HOH HOH . E 5 HOH AAA 175 675 187 HOH HOH . E 5 HOH AAA 176 676 91 HOH HOH . E 5 HOH AAA 177 677 120 HOH HOH . E 5 HOH AAA 178 678 43 HOH HOH . E 5 HOH AAA 179 679 194 HOH HOH . E 5 HOH AAA 180 680 190 HOH HOH . E 5 HOH AAA 181 681 157 HOH HOH . E 5 HOH AAA 182 682 188 HOH HOH . E 5 HOH AAA 183 683 179 HOH HOH . E 5 HOH AAA 184 684 136 HOH HOH . E 5 HOH AAA 185 685 114 HOH HOH . E 5 HOH AAA 186 686 185 HOH HOH . E 5 HOH AAA 187 687 148 HOH HOH . E 5 HOH AAA 188 688 176 HOH HOH . E 5 HOH AAA 189 689 191 HOH HOH . E 5 HOH AAA 190 690 167 HOH HOH . E 5 HOH AAA 191 691 158 HOH HOH . E 5 HOH AAA 192 692 108 HOH HOH . E 5 HOH AAA 193 693 132 HOH HOH . E 5 HOH AAA 194 694 192 HOH HOH . E 5 HOH AAA 195 695 135 HOH HOH . E 5 HOH AAA 196 696 85 HOH HOH . E 5 HOH AAA 197 697 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XYS . . . C 3 -4.876 -3.704 32.808 1 27.13 0 C1 XYS 402 AAA 1 HETATM 2 C C2 XYS . . . C 3 -4.334 -5.119 32.644 1 25.16 0 C2 XYS 402 AAA 1 HETATM 3 C C3 XYS . . . C 3 -5.074 -5.815 31.474 1 26.35 0 C3 XYS 402 AAA 1 HETATM 4 C C4 XYS . . . C 3 -6.569 -5.697 31.573 1 25.6 0 C4 XYS 402 AAA 1 HETATM 5 C C5 XYS . . . C 3 -7.019 -4.28 31.839 1 27.27 0 C5 XYS 402 AAA 1 HETATM 6 O O2 XYS . . . C 3 -2.95 -5.155 32.303 1 26.5 0 O2 XYS 402 AAA 1 HETATM 7 O O3 XYS . . . C 3 -4.73 -7.184 31.521 1 27.01 0 O3 XYS 402 AAA 1 HETATM 8 O O4 XYS . . . C 3 -7.195 -6.187 30.376 1 24.24 0 O4 XYS 402 AAA 1 HETATM 9 O O5 XYS . . . C 3 -6.3 -3.722 32.924 1 27.41 0 O5 XYS 402 AAA 1 HETATM 10 H H1 XYS . . . C 3 -4.441 -3.27 33.719 1 26.72 0 H1 XYS 402 AAA 1 HETATM 11 H H2 XYS . . . C 3 -4.513 -5.684 33.569 1 26 0 H2 XYS 402 AAA 1 HETATM 12 H H3 XYS . . . C 3 -4.743 -5.376 30.523 1 26.09 0 H3 XYS 402 AAA 1 HETATM 13 H H4 XYS . . . C 3 -6.896 -6.315 32.421 1 25.78 0 H4 XYS 402 AAA 1 HETATM 14 H H51 XYS . . . C 3 -6.886 -3.676 30.939 1 26.9 0 H51 XYS 402 AAA 1 HETATM 15 H H52 XYS . . . C 3 -8.084 -4.283 32.079 1 26.9 0 H52 XYS 402 AAA 1 HETATM 16 H HO2 XYS . . . C 3 -2.456 -4.748 33.035 0 27.06 0 HO2 XYS 402 AAA 1 HETATM 17 H HO3 XYS . . . C 3 -5.135 -7.649 30.733 0 26.92 0 HO3 XYS 402 AAA 1 HETATM 18 H HO4 XYS . . . C 3 -7.772 -5.483 30.02 0 24.68 0 HO4 XYS 402 AAA 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #