data_8BQB # _model_server_result.job_id rjKr6FnQgNLg5ApimlUJug _model_server_result.datetime_utc '2024-11-13 10:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8BQB # _exptl.entry_id 8BQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BQB _cell.length_a 126.441 _cell.length_b 176.159 _cell.length_c 115.701 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE1 GLU 265 A GLU 265 1_555 D C1 YLL . A YLL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale2 D O4 YLL . A YLL 401 1_555 E C1 BGC . A BGC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B OE1 GLU 265 B GLU 265 1_555 F C1 YLL . B YLL 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 F O4 YLL . B YLL 401 1_555 G C1 BGC . B BGC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? covale ? covale5 C OE1 GLU 265 C GLU 265 1_555 I C1 YLL . C YLL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 H C1 BGC . C BGC 401 1_555 I O4 YLL . C YLL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8BQB _atom_sites.fract_transf_matrix[1][1] 0.007909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 YLL A 1 401 401 YLL YLL . E 3 BGC A 1 402 501 BGC BGC . F 2 YLL B 1 401 401 YLL YLL . G 3 BGC B 1 402 501 BGC BGC . H 3 BGC C 1 401 401 BGC BGC . I 2 YLL C 1 402 501 YLL YLL . J 4 HOH A 1 501 5 HOH HOH . J 4 HOH A 2 502 7 HOH HOH . J 4 HOH A 3 503 15 HOH HOH . J 4 HOH A 4 504 4 HOH HOH . J 4 HOH A 5 505 14 HOH HOH . J 4 HOH A 6 506 12 HOH HOH . J 4 HOH A 7 507 2 HOH HOH . J 4 HOH A 8 508 21 HOH HOH . K 4 HOH B 1 501 17 HOH HOH . K 4 HOH B 2 502 1 HOH HOH . K 4 HOH B 3 503 11 HOH HOH . K 4 HOH B 4 504 16 HOH HOH . K 4 HOH B 5 505 6 HOH HOH . K 4 HOH B 6 506 8 HOH HOH . K 4 HOH B 7 507 3 HOH HOH . K 4 HOH B 8 508 13 HOH HOH . K 4 HOH B 9 509 10 HOH HOH . L 4 HOH C 1 501 20 HOH HOH . L 4 HOH C 2 502 22 HOH HOH . L 4 HOH C 3 503 18 HOH HOH . L 4 HOH C 4 504 19 HOH HOH . L 4 HOH C 5 505 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . E 3 -10.242 32.502 1.211 1 35.88 0 C2 BGC 402 A 1 HETATM 2 C C3 BGC . . . E 3 -10.319 33.142 2.61 1 36.75 0 C3 BGC 402 A 1 HETATM 3 C C4 BGC . . . E 3 -9.272 32.573 3.544 1 36.28 0 C4 BGC 402 A 1 HETATM 4 C C5 BGC . . . E 3 -7.868 32.62 2.942 1 38.32 0 C5 BGC 402 A 1 HETATM 5 C C6 BGC . . . E 3 -6.887 31.779 3.749 1 38.47 0 C6 BGC 402 A 1 HETATM 6 C C1 BGC . . . E 3 -8.83 32.66 0.656 1 35.82 0 C1 BGC 402 A 1 HETATM 7 O O2 BGC . . . E 3 -11.192 33.004 0.268 1 32.01 0 O2 BGC 402 A 1 HETATM 8 O O3 BGC . . . E 3 -11.589 32.926 3.215 1 37.91 0 O3 BGC 402 A 1 HETATM 9 O O4 BGC . . . E 3 -9.276 33.334 4.732 1 35.4 0 O4 BGC 402 A 1 HETATM 10 O O5 BGC . . . E 3 -7.856 32.096 1.564 1 39.25 0 O5 BGC 402 A 1 HETATM 11 O O6 BGC . . . E 3 -5.568 31.704 3.154 1 37.6 0 O6 BGC 402 A 1 HETATM 12 H H2 BGC . . . E 3 -10.396 31.533 1.311 1 35.19 0 H2 BGC 402 A 1 HETATM 13 H H3 BGC . . . E 3 -10.169 34.118 2.522 1 36.71 0 H3 BGC 402 A 1 HETATM 14 H H4 BGC . . . E 3 -9.503 31.64 3.756 1 36.64 0 H4 BGC 402 A 1 HETATM 15 H H5 BGC . . . E 3 -7.557 33.557 2.931 1 38.13 0 H5 BGC 402 A 1 HETATM 16 H H61 BGC . . . E 3 -7.245 30.871 3.84 1 38.23 0 H61 BGC 402 A 1 HETATM 17 H H62 BGC . . . E 3 -6.807 32.159 4.649 1 38.23 0 H62 BGC 402 A 1 HETATM 18 H H1 BGC . . . E 3 -8.633 33.624 0.542 1 36.61 0 H1 BGC 402 A 1 HETATM 19 H HO2 BGC . . . E 3 -10.777 33.155 -0.423 0 30.26 0 HO2 BGC 402 A 1 HETATM 20 H HO3 BGC . . . E 3 -11.451 32.586 3.968 0 38.26 0 HO3 BGC 402 A 1 HETATM 21 H HO4 BGC . . . E 3 -8.535 33.804 4.816 0 35.46 0 HO4 BGC 402 A 1 HETATM 22 H HO6 BGC . . . E 3 -5.573 32.143 2.451 0 40.16 0 HO6 BGC 402 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #