data_8BQG
#
_model_server_result.job_id            pFdi5r_dLCrOYYltv9r8Vw 
_model_server_result.datetime_utc      '2024-11-06 23:43:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bqg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1107}' 
#
_entry.id    8BQG 
#
_exptl.entry_id    8BQG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BQG 
_cell.length_a            64.537 
_cell.length_b            122.778 
_cell.length_c            148.985 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BQG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 I N N 
? 7 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc7 D S12 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc8 D S13 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc9 F S H2S . A H2S 1104 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc10 B SG CYS 12 B CYS 12 1_555 N FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc11 B SG CYS 15 B CYS 15 1_555 N FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc12 B SG CYS 18 B CYS 18 1_555 N FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc13 B SG CYS 22 B CYS 22 1_555 P FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc14 B SG CYS 74 B CYS 74 1_555 O FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc15 B SG CYS 77 B CYS 77 1_555 O FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc16 B SG CYS 82 B CYS 82 1_555 O FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc17 B SG CYS 121 B CYS 121 1_555 O FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc18 B SG CYS 138 B CYS 138 1_555 P FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc19 B SG CYS 141 B CYS 141 1_555 P FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc20 B SG CYS 153 B CYS 153 1_555 P FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc21 B SG CYS 157 B CYS 157 1_555 N FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 142 n n 
C1 C2 GOL sing 143 n n 
C1 H11 GOL sing 144 n n 
C1 H12 GOL sing 145 n n 
O1 HO1 GOL sing 146 n n 
C2 O2 GOL sing 147 n n 
C2 C3 GOL sing 148 n n 
C2 H2 GOL sing 149 n n 
O2 HO2 GOL sing 150 n n 
C3 O3 GOL sing 151 n n 
C3 H31 GOL sing 152 n n 
C3 H32 GOL sing 153 n n 
O3 HO3 GOL sing 154 n n 
#
_atom_sites.entry_id                     8BQG 
_atom_sites.fract_transf_matrix[1][1]    0.015495 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGD A 1 1101 1101 MGD MGD . 
D 3 MGD A 1 1102 1102 MGD MGD . 
E 4 SF4 A 1 1103 1103 SF4 SF4 . 
F 5 H2S A 1 1104 1109 H2S H2S . 
G 6 W A 1 1105 1110 W W . 
H 7 GOL A 1 1106 1201 GOL GOL . 
I 7 GOL A 1 1107 1301 GOL GOL . 
J 8 PEG A 1 1108 1401 PEG PEG . 
K 7 GOL A 1 1109 1501 GOL GOL . 
L 9 EDO A 1 1110 1601 EDO EDO . 
M 10 FMT A 1 1111 1701 FMT FMT . 
N 4 SF4 B 1 301 301 SF4 SF4 . 
O 4 SF4 B 1 302 302 SF4 SF4 . 
P 4 SF4 B 1 303 303 SF4 SF4 . 
Q 9 EDO B 1 304 304 EDO EDO . 
R 11 HOH A 1 1201 118 HOH HOH . 
R 11 HOH A 2 1202 83 HOH HOH . 
R 11 HOH A 3 1203 30 HOH HOH . 
R 11 HOH A 4 1204 8 HOH HOH . 
R 11 HOH A 5 1205 12 HOH HOH . 
R 11 HOH A 6 1206 87 HOH HOH . 
R 11 HOH A 7 1207 43 HOH HOH . 
R 11 HOH A 8 1208 149 HOH HOH . 
R 11 HOH A 9 1209 122 HOH HOH . 
R 11 HOH A 10 1210 77 HOH HOH . 
R 11 HOH A 11 1211 141 HOH HOH . 
R 11 HOH A 12 1212 93 HOH HOH . 
R 11 HOH A 13 1213 11 HOH HOH . 
R 11 HOH A 14 1214 68 HOH HOH . 
R 11 HOH A 15 1215 31 HOH HOH . 
R 11 HOH A 16 1216 44 HOH HOH . 
R 11 HOH A 17 1217 46 HOH HOH . 
R 11 HOH A 18 1218 144 HOH HOH . 
R 11 HOH A 19 1219 151 HOH HOH . 
R 11 HOH A 20 1220 27 HOH HOH . 
R 11 HOH A 21 1221 33 HOH HOH . 
R 11 HOH A 22 1222 80 HOH HOH . 
R 11 HOH A 23 1223 53 HOH HOH . 
R 11 HOH A 24 1224 56 HOH HOH . 
R 11 HOH A 25 1225 65 HOH HOH . 
R 11 HOH A 26 1226 72 HOH HOH . 
R 11 HOH A 27 1227 24 HOH HOH . 
R 11 HOH A 28 1228 58 HOH HOH . 
R 11 HOH A 29 1229 47 HOH HOH . 
R 11 HOH A 30 1230 98 HOH HOH . 
R 11 HOH A 31 1231 88 HOH HOH . 
R 11 HOH A 32 1232 71 HOH HOH . 
R 11 HOH A 33 1233 143 HOH HOH . 
R 11 HOH A 34 1234 66 HOH HOH . 
R 11 HOH A 35 1235 91 HOH HOH . 
R 11 HOH A 36 1236 45 HOH HOH . 
R 11 HOH A 37 1237 131 HOH HOH . 
R 11 HOH A 38 1238 75 HOH HOH . 
R 11 HOH A 39 1239 69 HOH HOH . 
R 11 HOH A 40 1240 132 HOH HOH . 
R 11 HOH A 41 1241 100 HOH HOH . 
R 11 HOH A 42 1242 64 HOH HOH . 
R 11 HOH A 43 1243 50 HOH HOH . 
R 11 HOH A 44 1244 103 HOH HOH . 
R 11 HOH A 45 1245 62 HOH HOH . 
R 11 HOH A 46 1246 55 HOH HOH . 
R 11 HOH A 47 1247 51 HOH HOH . 
R 11 HOH A 48 1248 99 HOH HOH . 
R 11 HOH A 49 1249 20 HOH HOH . 
R 11 HOH A 50 1250 37 HOH HOH . 
R 11 HOH A 51 1251 49 HOH HOH . 
R 11 HOH A 52 1252 94 HOH HOH . 
R 11 HOH A 53 1253 96 HOH HOH . 
R 11 HOH A 54 1254 89 HOH HOH . 
R 11 HOH A 55 1255 146 HOH HOH . 
R 11 HOH A 56 1256 129 HOH HOH . 
R 11 HOH A 57 1257 52 HOH HOH . 
R 11 HOH A 58 1258 23 HOH HOH . 
R 11 HOH A 59 1259 41 HOH HOH . 
R 11 HOH A 60 1260 133 HOH HOH . 
R 11 HOH A 61 1261 84 HOH HOH . 
R 11 HOH A 62 1262 60 HOH HOH . 
R 11 HOH A 63 1263 73 HOH HOH . 
R 11 HOH A 64 1264 48 HOH HOH . 
R 11 HOH A 65 1265 22 HOH HOH . 
R 11 HOH A 66 1266 54 HOH HOH . 
R 11 HOH A 67 1267 38 HOH HOH . 
R 11 HOH A 68 1268 17 HOH HOH . 
R 11 HOH A 69 1269 34 HOH HOH . 
R 11 HOH A 70 1270 86 HOH HOH . 
R 11 HOH A 71 1271 137 HOH HOH . 
R 11 HOH A 72 1272 18 HOH HOH . 
R 11 HOH A 73 1273 4 HOH HOH . 
R 11 HOH A 74 1274 70 HOH HOH . 
R 11 HOH A 75 1275 19 HOH HOH . 
R 11 HOH A 76 1276 5 HOH HOH . 
R 11 HOH A 77 1277 29 HOH HOH . 
R 11 HOH A 78 1278 138 HOH HOH . 
R 11 HOH A 79 1279 59 HOH HOH . 
R 11 HOH A 80 1280 21 HOH HOH . 
R 11 HOH A 81 1281 97 HOH HOH . 
R 11 HOH A 82 1282 57 HOH HOH . 
R 11 HOH A 83 1283 90 HOH HOH . 
R 11 HOH A 84 1284 78 HOH HOH . 
R 11 HOH A 85 1285 134 HOH HOH . 
R 11 HOH A 86 1286 61 HOH HOH . 
R 11 HOH A 87 1287 13 HOH HOH . 
R 11 HOH A 88 1288 74 HOH HOH . 
R 11 HOH A 89 1289 128 HOH HOH . 
R 11 HOH A 90 1290 117 HOH HOH . 
R 11 HOH A 91 1291 145 HOH HOH . 
R 11 HOH A 92 1292 3 HOH HOH . 
R 11 HOH A 93 1293 76 HOH HOH . 
R 11 HOH A 94 1294 6 HOH HOH . 
R 11 HOH A 95 1295 10 HOH HOH . 
R 11 HOH A 96 1296 42 HOH HOH . 
R 11 HOH A 97 1297 9 HOH HOH . 
R 11 HOH A 98 1298 147 HOH HOH . 
R 11 HOH A 99 1299 119 HOH HOH . 
R 11 HOH A 100 1300 130 HOH HOH . 
R 11 HOH A 101 1301 82 HOH HOH . 
R 11 HOH A 102 1302 116 HOH HOH . 
R 11 HOH A 103 1303 120 HOH HOH . 
R 11 HOH A 104 1304 115 HOH HOH . 
R 11 HOH A 105 1305 114 HOH HOH . 
R 11 HOH A 106 1306 14 HOH HOH . 
R 11 HOH A 107 1307 40 HOH HOH . 
R 11 HOH A 108 1308 112 HOH HOH . 
R 11 HOH A 109 1309 111 HOH HOH . 
R 11 HOH A 110 1310 136 HOH HOH . 
R 11 HOH A 111 1311 113 HOH HOH . 
R 11 HOH A 112 1312 126 HOH HOH . 
R 11 HOH A 113 1313 124 HOH HOH . 
R 11 HOH A 114 1314 102 HOH HOH . 
R 11 HOH A 115 1315 81 HOH HOH . 
R 11 HOH A 116 1316 135 HOH HOH . 
R 11 HOH A 117 1317 105 HOH HOH . 
R 11 HOH A 118 1318 92 HOH HOH . 
R 11 HOH A 119 1319 109 HOH HOH . 
R 11 HOH A 120 1320 108 HOH HOH . 
R 11 HOH A 121 1321 107 HOH HOH . 
R 11 HOH A 122 1322 106 HOH HOH . 
S 11 HOH B 1 401 79 HOH HOH . 
S 11 HOH B 2 402 39 HOH HOH . 
S 11 HOH B 3 403 101 HOH HOH . 
S 11 HOH B 4 404 67 HOH HOH . 
S 11 HOH B 5 405 63 HOH HOH . 
S 11 HOH B 6 406 150 HOH HOH . 
S 11 HOH B 7 407 32 HOH HOH . 
S 11 HOH B 8 408 123 HOH HOH . 
S 11 HOH B 9 409 139 HOH HOH . 
S 11 HOH B 10 410 25 HOH HOH . 
S 11 HOH B 11 411 142 HOH HOH . 
S 11 HOH B 12 412 15 HOH HOH . 
S 11 HOH B 13 413 7 HOH HOH . 
S 11 HOH B 14 414 85 HOH HOH . 
S 11 HOH B 15 415 28 HOH HOH . 
S 11 HOH B 16 416 95 HOH HOH . 
S 11 HOH B 17 417 152 HOH HOH . 
S 11 HOH B 18 418 35 HOH HOH . 
S 11 HOH B 19 419 36 HOH HOH . 
S 11 HOH B 20 420 2 HOH HOH . 
S 11 HOH B 21 421 16 HOH HOH . 
S 11 HOH B 22 422 121 HOH HOH . 
S 11 HOH B 23 423 127 HOH HOH . 
S 11 HOH B 24 424 26 HOH HOH . 
S 11 HOH B 25 425 1 HOH HOH . 
S 11 HOH B 26 426 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 7 -0.691 -13.665 -17.419 1 38.46 0 C1 GOL 1107 A 1 
HETATM 2 O O1 GOL . . . I 7 -1.029 -13.033 -16.182 1 31.53 0 O1 GOL 1107 A 1 
HETATM 3 C C2 GOL . . . I 7 0.624 -14.419 -17.335 1 37.35 0 C2 GOL 1107 A 1 
HETATM 4 O O2 GOL . . . I 7 1.096 -14.462 -15.989 1 37.21 0 O2 GOL 1107 A 1 
HETATM 5 C C3 GOL . . . I 7 1.699 -13.83 -18.213 1 39.25 0 C3 GOL 1107 A 1 
HETATM 6 O O3 GOL . . . I 7 2.721 -14.777 -18.517 1 42.51 0 O3 GOL 1107 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#