data_8BQG # _model_server_result.job_id NiYGDcXa-D1GAOhZGMnCSA _model_server_result.datetime_utc '2024-11-22 11:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1108}' # _entry.id 8BQG # _exptl.entry_id 8BQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BQG _cell.length_a 64.537 _cell.length_b 122.778 _cell.length_c 148.985 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc7 D S12 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc8 D S13 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc9 F S H2S . A H2S 1104 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B SG CYS 12 B CYS 12 1_555 N FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc11 B SG CYS 15 B CYS 15 1_555 N FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc12 B SG CYS 18 B CYS 18 1_555 N FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc13 B SG CYS 22 B CYS 22 1_555 P FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc14 B SG CYS 74 B CYS 74 1_555 O FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc15 B SG CYS 77 B CYS 77 1_555 O FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc16 B SG CYS 82 B CYS 82 1_555 O FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc17 B SG CYS 121 B CYS 121 1_555 O FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc18 B SG CYS 138 B CYS 138 1_555 P FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc19 B SG CYS 141 B CYS 141 1_555 P FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc20 B SG CYS 153 B CYS 153 1_555 P FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc21 B SG CYS 157 B CYS 157 1_555 N FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 343 n n C1 C2 PEG sing 344 n n C1 H11 PEG sing 345 n n C1 H12 PEG sing 346 n n O1 HO1 PEG sing 347 n n C2 O2 PEG sing 348 n n C2 H21 PEG sing 349 n n C2 H22 PEG sing 350 n n O2 C3 PEG sing 351 n n C3 C4 PEG sing 352 n n C3 H31 PEG sing 353 n n C3 H32 PEG sing 354 n n C4 O4 PEG sing 355 n n C4 H41 PEG sing 356 n n C4 H42 PEG sing 357 n n O4 HO4 PEG sing 358 n n # _atom_sites.entry_id 8BQG _atom_sites.fract_transf_matrix[1][1] 0.015495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGD A 1 1101 1101 MGD MGD . D 3 MGD A 1 1102 1102 MGD MGD . E 4 SF4 A 1 1103 1103 SF4 SF4 . F 5 H2S A 1 1104 1109 H2S H2S . G 6 W A 1 1105 1110 W W . H 7 GOL A 1 1106 1201 GOL GOL . I 7 GOL A 1 1107 1301 GOL GOL . J 8 PEG A 1 1108 1401 PEG PEG . K 7 GOL A 1 1109 1501 GOL GOL . L 9 EDO A 1 1110 1601 EDO EDO . M 10 FMT A 1 1111 1701 FMT FMT . N 4 SF4 B 1 301 301 SF4 SF4 . O 4 SF4 B 1 302 302 SF4 SF4 . P 4 SF4 B 1 303 303 SF4 SF4 . Q 9 EDO B 1 304 304 EDO EDO . R 11 HOH A 1 1201 118 HOH HOH . R 11 HOH A 2 1202 83 HOH HOH . R 11 HOH A 3 1203 30 HOH HOH . R 11 HOH A 4 1204 8 HOH HOH . R 11 HOH A 5 1205 12 HOH HOH . R 11 HOH A 6 1206 87 HOH HOH . R 11 HOH A 7 1207 43 HOH HOH . R 11 HOH A 8 1208 149 HOH HOH . R 11 HOH A 9 1209 122 HOH HOH . R 11 HOH A 10 1210 77 HOH HOH . R 11 HOH A 11 1211 141 HOH HOH . R 11 HOH A 12 1212 93 HOH HOH . R 11 HOH A 13 1213 11 HOH HOH . R 11 HOH A 14 1214 68 HOH HOH . R 11 HOH A 15 1215 31 HOH HOH . R 11 HOH A 16 1216 44 HOH HOH . R 11 HOH A 17 1217 46 HOH HOH . R 11 HOH A 18 1218 144 HOH HOH . R 11 HOH A 19 1219 151 HOH HOH . R 11 HOH A 20 1220 27 HOH HOH . R 11 HOH A 21 1221 33 HOH HOH . R 11 HOH A 22 1222 80 HOH HOH . R 11 HOH A 23 1223 53 HOH HOH . R 11 HOH A 24 1224 56 HOH HOH . R 11 HOH A 25 1225 65 HOH HOH . R 11 HOH A 26 1226 72 HOH HOH . R 11 HOH A 27 1227 24 HOH HOH . R 11 HOH A 28 1228 58 HOH HOH . R 11 HOH A 29 1229 47 HOH HOH . R 11 HOH A 30 1230 98 HOH HOH . R 11 HOH A 31 1231 88 HOH HOH . R 11 HOH A 32 1232 71 HOH HOH . R 11 HOH A 33 1233 143 HOH HOH . R 11 HOH A 34 1234 66 HOH HOH . R 11 HOH A 35 1235 91 HOH HOH . R 11 HOH A 36 1236 45 HOH HOH . R 11 HOH A 37 1237 131 HOH HOH . R 11 HOH A 38 1238 75 HOH HOH . R 11 HOH A 39 1239 69 HOH HOH . R 11 HOH A 40 1240 132 HOH HOH . R 11 HOH A 41 1241 100 HOH HOH . R 11 HOH A 42 1242 64 HOH HOH . R 11 HOH A 43 1243 50 HOH HOH . R 11 HOH A 44 1244 103 HOH HOH . R 11 HOH A 45 1245 62 HOH HOH . R 11 HOH A 46 1246 55 HOH HOH . R 11 HOH A 47 1247 51 HOH HOH . R 11 HOH A 48 1248 99 HOH HOH . R 11 HOH A 49 1249 20 HOH HOH . R 11 HOH A 50 1250 37 HOH HOH . R 11 HOH A 51 1251 49 HOH HOH . R 11 HOH A 52 1252 94 HOH HOH . R 11 HOH A 53 1253 96 HOH HOH . R 11 HOH A 54 1254 89 HOH HOH . R 11 HOH A 55 1255 146 HOH HOH . R 11 HOH A 56 1256 129 HOH HOH . R 11 HOH A 57 1257 52 HOH HOH . R 11 HOH A 58 1258 23 HOH HOH . R 11 HOH A 59 1259 41 HOH HOH . R 11 HOH A 60 1260 133 HOH HOH . R 11 HOH A 61 1261 84 HOH HOH . R 11 HOH A 62 1262 60 HOH HOH . R 11 HOH A 63 1263 73 HOH HOH . R 11 HOH A 64 1264 48 HOH HOH . R 11 HOH A 65 1265 22 HOH HOH . R 11 HOH A 66 1266 54 HOH HOH . R 11 HOH A 67 1267 38 HOH HOH . R 11 HOH A 68 1268 17 HOH HOH . R 11 HOH A 69 1269 34 HOH HOH . R 11 HOH A 70 1270 86 HOH HOH . R 11 HOH A 71 1271 137 HOH HOH . R 11 HOH A 72 1272 18 HOH HOH . R 11 HOH A 73 1273 4 HOH HOH . R 11 HOH A 74 1274 70 HOH HOH . R 11 HOH A 75 1275 19 HOH HOH . R 11 HOH A 76 1276 5 HOH HOH . R 11 HOH A 77 1277 29 HOH HOH . R 11 HOH A 78 1278 138 HOH HOH . R 11 HOH A 79 1279 59 HOH HOH . R 11 HOH A 80 1280 21 HOH HOH . R 11 HOH A 81 1281 97 HOH HOH . R 11 HOH A 82 1282 57 HOH HOH . R 11 HOH A 83 1283 90 HOH HOH . R 11 HOH A 84 1284 78 HOH HOH . R 11 HOH A 85 1285 134 HOH HOH . R 11 HOH A 86 1286 61 HOH HOH . R 11 HOH A 87 1287 13 HOH HOH . R 11 HOH A 88 1288 74 HOH HOH . R 11 HOH A 89 1289 128 HOH HOH . R 11 HOH A 90 1290 117 HOH HOH . R 11 HOH A 91 1291 145 HOH HOH . R 11 HOH A 92 1292 3 HOH HOH . R 11 HOH A 93 1293 76 HOH HOH . R 11 HOH A 94 1294 6 HOH HOH . R 11 HOH A 95 1295 10 HOH HOH . R 11 HOH A 96 1296 42 HOH HOH . R 11 HOH A 97 1297 9 HOH HOH . R 11 HOH A 98 1298 147 HOH HOH . R 11 HOH A 99 1299 119 HOH HOH . R 11 HOH A 100 1300 130 HOH HOH . R 11 HOH A 101 1301 82 HOH HOH . R 11 HOH A 102 1302 116 HOH HOH . R 11 HOH A 103 1303 120 HOH HOH . R 11 HOH A 104 1304 115 HOH HOH . R 11 HOH A 105 1305 114 HOH HOH . R 11 HOH A 106 1306 14 HOH HOH . R 11 HOH A 107 1307 40 HOH HOH . R 11 HOH A 108 1308 112 HOH HOH . R 11 HOH A 109 1309 111 HOH HOH . R 11 HOH A 110 1310 136 HOH HOH . R 11 HOH A 111 1311 113 HOH HOH . R 11 HOH A 112 1312 126 HOH HOH . R 11 HOH A 113 1313 124 HOH HOH . R 11 HOH A 114 1314 102 HOH HOH . R 11 HOH A 115 1315 81 HOH HOH . R 11 HOH A 116 1316 135 HOH HOH . R 11 HOH A 117 1317 105 HOH HOH . R 11 HOH A 118 1318 92 HOH HOH . R 11 HOH A 119 1319 109 HOH HOH . R 11 HOH A 120 1320 108 HOH HOH . R 11 HOH A 121 1321 107 HOH HOH . R 11 HOH A 122 1322 106 HOH HOH . S 11 HOH B 1 401 79 HOH HOH . S 11 HOH B 2 402 39 HOH HOH . S 11 HOH B 3 403 101 HOH HOH . S 11 HOH B 4 404 67 HOH HOH . S 11 HOH B 5 405 63 HOH HOH . S 11 HOH B 6 406 150 HOH HOH . S 11 HOH B 7 407 32 HOH HOH . S 11 HOH B 8 408 123 HOH HOH . S 11 HOH B 9 409 139 HOH HOH . S 11 HOH B 10 410 25 HOH HOH . S 11 HOH B 11 411 142 HOH HOH . S 11 HOH B 12 412 15 HOH HOH . S 11 HOH B 13 413 7 HOH HOH . S 11 HOH B 14 414 85 HOH HOH . S 11 HOH B 15 415 28 HOH HOH . S 11 HOH B 16 416 95 HOH HOH . S 11 HOH B 17 417 152 HOH HOH . S 11 HOH B 18 418 35 HOH HOH . S 11 HOH B 19 419 36 HOH HOH . S 11 HOH B 20 420 2 HOH HOH . S 11 HOH B 21 421 16 HOH HOH . S 11 HOH B 22 422 121 HOH HOH . S 11 HOH B 23 423 127 HOH HOH . S 11 HOH B 24 424 26 HOH HOH . S 11 HOH B 25 425 1 HOH HOH . S 11 HOH B 26 426 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . J 8 -36.69 22.876 -43.517 1 48.21 0 C1 PEG 1108 A 1 HETATM 2 O O1 PEG . . . J 8 -37.201 23.493 -42.36 1 47.28 0 O1 PEG 1108 A 1 HETATM 3 C C2 PEG . . . J 8 -37.07 23.644 -44.73 1 54.12 0 C2 PEG 1108 A 1 HETATM 4 O O2 PEG . . . J 8 -37.307 22.77 -45.831 1 62.88 0 O2 PEG 1108 A 1 HETATM 5 C C3 PEG . . . J 8 -37.647 23.468 -47.033 1 60.8 0 C3 PEG 1108 A 1 HETATM 6 C C4 PEG . . . J 8 -36.426 23.753 -47.856 1 62.45 0 C4 PEG 1108 A 1 HETATM 7 O O4 PEG . . . J 8 -36.065 25.122 -47.834 1 60.96 0 O4 PEG 1108 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 916 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #