data_8BQJ # _model_server_result.job_id uHKeRSNBS_dNUlVe7lGhaQ _model_server_result.datetime_utc '2024-11-06 21:39:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1106}' # _entry.id 8BQJ # _exptl.entry_id 8BQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BQJ _cell.length_a 123.351 _cell.length_b 150.55 _cell.length_c 64.941 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc7 D S12 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc8 D S13 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc9 F S H2S . A H2S 1104 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 B SG CYS 12 B CYS 12 1_555 L FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc11 B SG CYS 15 B CYS 15 1_555 L FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc12 B SG CYS 18 B CYS 18 1_555 L FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc13 B SG CYS 22 B CYS 22 1_555 N FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc14 B SG CYS 74 B CYS 74 1_555 M FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc15 B SG CYS 77 B CYS 77 1_555 M FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc16 B SG CYS 82 B CYS 82 1_555 M FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc17 B SG CYS 121 B CYS 121 1_555 M FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc18 B SG CYS 138 B CYS 138 1_555 N FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc19 B SG CYS 141 B CYS 141 1_555 N FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc20 B SG CYS 153 B CYS 153 1_555 N FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc21 B SG CYS 157 B CYS 157 1_555 L FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 8BQJ _atom_sites.fract_transf_matrix[1][1] 0.008107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGD A 1 1101 1101 MGD MGD . D 3 MGD A 1 1102 1102 MGD MGD . E 4 SF4 A 1 1103 1103 SF4 SF4 . F 5 H2S A 1 1104 1109 H2S H2S . G 6 W A 1 1105 1110 W W . H 7 GOL A 1 1106 1201 GOL GOL . I 7 GOL A 1 1107 1301 GOL GOL . J 8 PEG A 1 1108 1401 PEG PEG . K 9 EDO A 1 1109 1501 EDO EDO . L 4 SF4 B 1 301 301 SF4 SF4 . M 4 SF4 B 1 302 302 SF4 SF4 . N 4 SF4 B 1 303 303 SF4 SF4 . O 9 EDO B 1 304 401 EDO EDO . P 10 HOH A 1 1201 47 HOH HOH . P 10 HOH A 2 1202 57 HOH HOH . P 10 HOH A 3 1203 38 HOH HOH . P 10 HOH A 4 1204 33 HOH HOH . P 10 HOH A 5 1205 26 HOH HOH . P 10 HOH A 6 1206 27 HOH HOH . P 10 HOH A 7 1207 37 HOH HOH . P 10 HOH A 8 1208 7 HOH HOH . P 10 HOH A 9 1209 71 HOH HOH . P 10 HOH A 10 1210 22 HOH HOH . P 10 HOH A 11 1211 25 HOH HOH . P 10 HOH A 12 1212 4 HOH HOH . P 10 HOH A 13 1213 75 HOH HOH . P 10 HOH A 14 1214 69 HOH HOH . P 10 HOH A 15 1215 14 HOH HOH . P 10 HOH A 16 1216 17 HOH HOH . P 10 HOH A 17 1217 1 HOH HOH . P 10 HOH A 18 1218 58 HOH HOH . P 10 HOH A 19 1219 66 HOH HOH . P 10 HOH A 20 1220 8 HOH HOH . P 10 HOH A 21 1221 64 HOH HOH . P 10 HOH A 22 1222 40 HOH HOH . P 10 HOH A 23 1223 23 HOH HOH . P 10 HOH A 24 1224 9 HOH HOH . P 10 HOH A 25 1225 12 HOH HOH . P 10 HOH A 26 1226 32 HOH HOH . P 10 HOH A 27 1227 34 HOH HOH . P 10 HOH A 28 1228 65 HOH HOH . P 10 HOH A 29 1229 54 HOH HOH . P 10 HOH A 30 1230 11 HOH HOH . P 10 HOH A 31 1231 31 HOH HOH . P 10 HOH A 32 1232 73 HOH HOH . P 10 HOH A 33 1233 29 HOH HOH . P 10 HOH A 34 1234 20 HOH HOH . P 10 HOH A 35 1235 63 HOH HOH . P 10 HOH A 36 1236 70 HOH HOH . P 10 HOH A 37 1237 10 HOH HOH . P 10 HOH A 38 1238 59 HOH HOH . P 10 HOH A 39 1239 35 HOH HOH . P 10 HOH A 40 1240 2 HOH HOH . P 10 HOH A 41 1241 78 HOH HOH . P 10 HOH A 42 1242 24 HOH HOH . P 10 HOH A 43 1243 39 HOH HOH . P 10 HOH A 44 1244 19 HOH HOH . P 10 HOH A 45 1245 55 HOH HOH . P 10 HOH A 46 1246 72 HOH HOH . P 10 HOH A 47 1247 56 HOH HOH . P 10 HOH A 48 1248 52 HOH HOH . P 10 HOH A 49 1249 53 HOH HOH . P 10 HOH A 50 1250 5 HOH HOH . P 10 HOH A 51 1251 13 HOH HOH . P 10 HOH A 52 1252 28 HOH HOH . P 10 HOH A 53 1253 76 HOH HOH . P 10 HOH A 54 1254 61 HOH HOH . P 10 HOH A 55 1255 36 HOH HOH . P 10 HOH A 56 1256 67 HOH HOH . P 10 HOH A 57 1257 6 HOH HOH . P 10 HOH A 58 1258 44 HOH HOH . P 10 HOH A 59 1259 15 HOH HOH . P 10 HOH A 60 1260 74 HOH HOH . P 10 HOH A 61 1261 45 HOH HOH . P 10 HOH A 62 1262 68 HOH HOH . P 10 HOH A 63 1263 50 HOH HOH . P 10 HOH A 64 1264 42 HOH HOH . P 10 HOH A 65 1265 30 HOH HOH . P 10 HOH A 66 1266 43 HOH HOH . P 10 HOH A 67 1267 79 HOH HOH . P 10 HOH A 68 1268 77 HOH HOH . Q 10 HOH B 1 401 60 HOH HOH . Q 10 HOH B 2 402 41 HOH HOH . Q 10 HOH B 3 403 18 HOH HOH . Q 10 HOH B 4 404 51 HOH HOH . Q 10 HOH B 5 405 3 HOH HOH . Q 10 HOH B 6 406 49 HOH HOH . Q 10 HOH B 7 407 48 HOH HOH . Q 10 HOH B 8 408 21 HOH HOH . Q 10 HOH B 9 409 62 HOH HOH . Q 10 HOH B 10 410 16 HOH HOH . Q 10 HOH B 11 411 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 7 1.044 -14.633 -11.234 1 47.25 0 C1 GOL 1106 A 1 HETATM 2 O O1 GOL . . . H 7 1.42 -13.396 -10.634 1 45.48 0 O1 GOL 1106 A 1 HETATM 3 C C2 GOL . . . H 7 1.781 -14.894 -12.536 1 46.78 0 C2 GOL 1106 A 1 HETATM 4 O O2 GOL . . . H 7 2.223 -16.251 -12.569 1 47.52 0 O2 GOL 1106 A 1 HETATM 5 C C3 GOL . . . H 7 0.953 -14.62 -13.776 1 47.19 0 C3 GOL 1106 A 1 HETATM 6 O O3 GOL . . . H 7 0.929 -13.234 -14.107 1 48.4 0 O3 GOL 1106 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 6 #