data_8BQJ
#
_model_server_result.job_id            NJ3yAFYQiRHbA-8dNGYL1g 
_model_server_result.datetime_utc      '2024-11-24 11:38:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bqj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":302}' 
#
_entry.id    8BQJ 
#
_exptl.entry_id    8BQJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BQJ 
_cell.length_a            123.351 
_cell.length_b            150.55 
_cell.length_c            64.941 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BQJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc7 D S12 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc8 D S13 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc9 F S H2S . A H2S 1104 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc10 B SG CYS 12 B CYS 12 1_555 L FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc11 B SG CYS 15 B CYS 15 1_555 L FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc12 B SG CYS 18 B CYS 18 1_555 L FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc13 B SG CYS 22 B CYS 22 1_555 N FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc14 B SG CYS 74 B CYS 74 1_555 M FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc15 B SG CYS 77 B CYS 77 1_555 M FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc16 B SG CYS 82 B CYS 82 1_555 M FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc17 B SG CYS 121 B CYS 121 1_555 M FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc18 B SG CYS 138 B CYS 138 1_555 N FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc19 B SG CYS 141 B CYS 141 1_555 N FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc20 B SG CYS 153 B CYS 153 1_555 N FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc21 B SG CYS 157 B CYS 157 1_555 L FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 421 n n 
FE1 S3 SF4 sing 422 n n 
FE1 S4 SF4 sing 423 n n 
FE2 S1 SF4 sing 424 n n 
FE2 S3 SF4 sing 425 n n 
FE2 S4 SF4 sing 426 n n 
FE3 S1 SF4 sing 427 n n 
FE3 S2 SF4 sing 428 n n 
FE3 S4 SF4 sing 429 n n 
FE4 S1 SF4 sing 430 n n 
FE4 S2 SF4 sing 431 n n 
FE4 S3 SF4 sing 432 n n 
#
_atom_sites.entry_id                     8BQJ 
_atom_sites.fract_transf_matrix[1][1]    0.008107 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGD A 1 1101 1101 MGD MGD . 
D 3 MGD A 1 1102 1102 MGD MGD . 
E 4 SF4 A 1 1103 1103 SF4 SF4 . 
F 5 H2S A 1 1104 1109 H2S H2S . 
G 6 W A 1 1105 1110 W W . 
H 7 GOL A 1 1106 1201 GOL GOL . 
I 7 GOL A 1 1107 1301 GOL GOL . 
J 8 PEG A 1 1108 1401 PEG PEG . 
K 9 EDO A 1 1109 1501 EDO EDO . 
L 4 SF4 B 1 301 301 SF4 SF4 . 
M 4 SF4 B 1 302 302 SF4 SF4 . 
N 4 SF4 B 1 303 303 SF4 SF4 . 
O 9 EDO B 1 304 401 EDO EDO . 
P 10 HOH A 1 1201 47 HOH HOH . 
P 10 HOH A 2 1202 57 HOH HOH . 
P 10 HOH A 3 1203 38 HOH HOH . 
P 10 HOH A 4 1204 33 HOH HOH . 
P 10 HOH A 5 1205 26 HOH HOH . 
P 10 HOH A 6 1206 27 HOH HOH . 
P 10 HOH A 7 1207 37 HOH HOH . 
P 10 HOH A 8 1208 7 HOH HOH . 
P 10 HOH A 9 1209 71 HOH HOH . 
P 10 HOH A 10 1210 22 HOH HOH . 
P 10 HOH A 11 1211 25 HOH HOH . 
P 10 HOH A 12 1212 4 HOH HOH . 
P 10 HOH A 13 1213 75 HOH HOH . 
P 10 HOH A 14 1214 69 HOH HOH . 
P 10 HOH A 15 1215 14 HOH HOH . 
P 10 HOH A 16 1216 17 HOH HOH . 
P 10 HOH A 17 1217 1 HOH HOH . 
P 10 HOH A 18 1218 58 HOH HOH . 
P 10 HOH A 19 1219 66 HOH HOH . 
P 10 HOH A 20 1220 8 HOH HOH . 
P 10 HOH A 21 1221 64 HOH HOH . 
P 10 HOH A 22 1222 40 HOH HOH . 
P 10 HOH A 23 1223 23 HOH HOH . 
P 10 HOH A 24 1224 9 HOH HOH . 
P 10 HOH A 25 1225 12 HOH HOH . 
P 10 HOH A 26 1226 32 HOH HOH . 
P 10 HOH A 27 1227 34 HOH HOH . 
P 10 HOH A 28 1228 65 HOH HOH . 
P 10 HOH A 29 1229 54 HOH HOH . 
P 10 HOH A 30 1230 11 HOH HOH . 
P 10 HOH A 31 1231 31 HOH HOH . 
P 10 HOH A 32 1232 73 HOH HOH . 
P 10 HOH A 33 1233 29 HOH HOH . 
P 10 HOH A 34 1234 20 HOH HOH . 
P 10 HOH A 35 1235 63 HOH HOH . 
P 10 HOH A 36 1236 70 HOH HOH . 
P 10 HOH A 37 1237 10 HOH HOH . 
P 10 HOH A 38 1238 59 HOH HOH . 
P 10 HOH A 39 1239 35 HOH HOH . 
P 10 HOH A 40 1240 2 HOH HOH . 
P 10 HOH A 41 1241 78 HOH HOH . 
P 10 HOH A 42 1242 24 HOH HOH . 
P 10 HOH A 43 1243 39 HOH HOH . 
P 10 HOH A 44 1244 19 HOH HOH . 
P 10 HOH A 45 1245 55 HOH HOH . 
P 10 HOH A 46 1246 72 HOH HOH . 
P 10 HOH A 47 1247 56 HOH HOH . 
P 10 HOH A 48 1248 52 HOH HOH . 
P 10 HOH A 49 1249 53 HOH HOH . 
P 10 HOH A 50 1250 5 HOH HOH . 
P 10 HOH A 51 1251 13 HOH HOH . 
P 10 HOH A 52 1252 28 HOH HOH . 
P 10 HOH A 53 1253 76 HOH HOH . 
P 10 HOH A 54 1254 61 HOH HOH . 
P 10 HOH A 55 1255 36 HOH HOH . 
P 10 HOH A 56 1256 67 HOH HOH . 
P 10 HOH A 57 1257 6 HOH HOH . 
P 10 HOH A 58 1258 44 HOH HOH . 
P 10 HOH A 59 1259 15 HOH HOH . 
P 10 HOH A 60 1260 74 HOH HOH . 
P 10 HOH A 61 1261 45 HOH HOH . 
P 10 HOH A 62 1262 68 HOH HOH . 
P 10 HOH A 63 1263 50 HOH HOH . 
P 10 HOH A 64 1264 42 HOH HOH . 
P 10 HOH A 65 1265 30 HOH HOH . 
P 10 HOH A 66 1266 43 HOH HOH . 
P 10 HOH A 67 1267 79 HOH HOH . 
P 10 HOH A 68 1268 77 HOH HOH . 
Q 10 HOH B 1 401 60 HOH HOH . 
Q 10 HOH B 2 402 41 HOH HOH . 
Q 10 HOH B 3 403 18 HOH HOH . 
Q 10 HOH B 4 404 51 HOH HOH . 
Q 10 HOH B 5 405 3 HOH HOH . 
Q 10 HOH B 6 406 49 HOH HOH . 
Q 10 HOH B 7 407 48 HOH HOH . 
Q 10 HOH B 8 408 21 HOH HOH . 
Q 10 HOH B 9 409 62 HOH HOH . 
Q 10 HOH B 10 410 16 HOH HOH . 
Q 10 HOH B 11 411 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . M 4 22.492 -67.09 -6.361 1 51.97 0 FE1 SF4 302 B 1 
HETATM 2 FE FE2 SF4 . . . M 4 25.19 -67.056 -6.701 1 56.26 0 FE2 SF4 302 B 1 
HETATM 3 FE FE3 SF4 . . . M 4 23.78 -64.744 -7.019 1 50.74 0 FE3 SF4 302 B 1 
HETATM 4 FE FE4 SF4 . . . M 4 23.552 -66.767 -8.853 1 52.52 0 FE4 SF4 302 B 1 
HETATM 5 S S1 SF4 . . . M 4 25.421 -65.542 -8.396 1 51.72 0 S1 SF4 302 B 1 
HETATM 6 S S2 SF4 . . . M 4 21.856 -65.55 -7.918 1 56.61 0 S2 SF4 302 B 1 
HETATM 7 S S3 SF4 . . . M 4 23.73 -68.589 -7.531 1 53.03 0 S3 SF4 302 B 1 
HETATM 8 S S4 SF4 . . . M 4 24.003 -65.961 -5.089 1 53.9 0 S4 SF4 302 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#