data_8BQM # _model_server_result.job_id SKJIsUL0LiYAkODB2f7TYg _model_server_result.datetime_utc '2024-11-17 21:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 8BQM # _exptl.entry_id 8BQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.184 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Ru2-(OH)6 cluster' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BQM _cell.length_a 77.74 _cell.length_b 77.74 _cell.length_c 37.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A O SER 60 AAA SER 60 1_555 C NA NA . AAA NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A O CYS 64 AAA CYS 64 1_555 C NA NA . AAA NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc3 A OG SER 72 AAA SER 72 1_555 C NA NA . AAA NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc4 A O ARG 73 AAA ARG 73 1_555 C NA NA . AAA NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc5 A O ASP 101 AAA ASP 101 1_555 G RU2 R2U . AAA R2U 206 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.663 ? metalc ? metalc6 A OD1 ASP 101 AAA ASP 101 1_555 G RU1 R2U . AAA R2U 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.056 ? metalc ? metalc7 A OD1 ASP 101 AAA ASP 101 1_555 G RU2 R2U . AAA R2U 206 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.952 ? metalc ? metalc8 A OD2 ASP 101 AAA ASP 101 1_555 G RU2 R2U . AAA R2U 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.054 ? metalc ? metalc9 A OD1 ASP 119 AAA ASP 119 1_555 F RU1 R2U . AAA R2U 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc10 A OD2 ASP 119 AAA ASP 119 1_555 F RU2 R2U . AAA R2U 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc11 A NH2 ARG 125 AAA ARG 125 1_555 I RU1 R2U . AAA R2U 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc12 C NA NA . AAA NA 202 1_555 O O HOH . AAA HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc13 C NA NA . AAA NA 202 1_555 O O HOH . AAA HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc14 F RU1 R2U . AAA R2U 205 1_555 O O HOH . AAA HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc15 G RU2 R2U . AAA R2U 206 1_555 O O HOH . AAA HOH 359 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc16 G RU1 R2U . AAA R2U 206 1_555 O O HOH . AAA HOH 400 1_556 ? B ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc17 G RU2 R2U . AAA R2U 206 1_555 O O HOH . AAA HOH 400 1_556 ? C ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc18 G RU2 R2U . AAA R2U 206 1_555 O O HOH . AAA HOH 419 1_556 ? C ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc19 H RU2 R2U . AAA R2U 207 1_555 O O HOH . AAA HOH 400 1_556 ? B ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc20 H RU2 R2U . AAA R2U 207 1_555 O O HOH . AAA HOH 428 1_556 ? B ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc21 H RU2 R2U . AAA R2U 207 1_555 O O HOH . AAA HOH 431 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'H6 O6 Ru2' _chem_comp.formula_weight 304.184 _chem_comp.id R2U _chem_comp.mon_nstd_flag . _chem_comp.name 'Ru2-(OH)6 cluster' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 RU1 R2U sing 283 n n O4 RU2 R2U sing 284 n n RU1 O5 R2U sing 285 n n RU1 RU2 R2U sing 286 n n RU1 O7 R2U sing 287 n n RU2 O6 R2U sing 288 n n RU2 O8 R2U sing 289 n n O3 H1 R2U sing 290 n n O4 H2 R2U sing 291 n n O5 H3 R2U sing 292 n n O6 H4 R2U sing 293 n n O7 H5 R2U sing 294 n n O8 H6 R2U sing 295 n n # _atom_sites.entry_id 8BQM _atom_sites.fract_transf_matrix[1][1] 0.012863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL AAA 1 201 130 CL CL . C 3 NA AAA 1 202 131 NA NA . D 4 ACT AAA 1 203 132 ACT ACT . E 4 ACT AAA 1 204 134 ACT ACT . F 5 R2U AAA 1 205 1 R2U DWR . G 5 R2U AAA 1 206 1 R2U DWR . H 5 R2U AAA 1 207 2 R2U DWR . I 5 R2U AAA 1 208 1 R2U DWR . J 2 CL AAA 1 209 1 CL CL . K 2 CL AAA 1 210 2 CL CL . L 2 CL AAA 1 211 3 CL CL . M 2 CL AAA 1 212 9 CL CL . N 2 CL AAA 1 213 10 CL CL . O 6 HOH AAA 1 301 100 HOH HOH . O 6 HOH AAA 2 302 178 HOH HOH . O 6 HOH AAA 3 303 110 HOH HOH . O 6 HOH AAA 4 304 162 HOH HOH . O 6 HOH AAA 5 305 52 HOH HOH . O 6 HOH AAA 6 306 32 HOH HOH . O 6 HOH AAA 7 307 17 HOH HOH . O 6 HOH AAA 8 308 50 HOH HOH . O 6 HOH AAA 9 309 152 HOH HOH . O 6 HOH AAA 10 310 104 HOH HOH . O 6 HOH AAA 11 311 95 HOH HOH . O 6 HOH AAA 12 312 107 HOH HOH . O 6 HOH AAA 13 313 173 HOH HOH . O 6 HOH AAA 14 314 60 HOH HOH . O 6 HOH AAA 15 315 26 HOH HOH . O 6 HOH AAA 16 316 27 HOH HOH . O 6 HOH AAA 17 317 124 HOH HOH . O 6 HOH AAA 18 318 136 HOH HOH . O 6 HOH AAA 19 319 56 HOH HOH . O 6 HOH AAA 20 320 3 HOH HOH . O 6 HOH AAA 21 321 63 HOH HOH . O 6 HOH AAA 22 322 14 HOH HOH . O 6 HOH AAA 23 323 106 HOH HOH . O 6 HOH AAA 24 324 58 HOH HOH . O 6 HOH AAA 25 325 88 HOH HOH . O 6 HOH AAA 26 326 89 HOH HOH . O 6 HOH AAA 27 327 166 HOH HOH . O 6 HOH AAA 28 328 21 HOH HOH . O 6 HOH AAA 29 329 33 HOH HOH . O 6 HOH AAA 30 330 108 HOH HOH . O 6 HOH AAA 31 331 1 HOH HOH . O 6 HOH AAA 32 332 85 HOH HOH . O 6 HOH AAA 33 333 98 HOH HOH . O 6 HOH AAA 34 334 40 HOH HOH . O 6 HOH AAA 35 335 31 HOH HOH . O 6 HOH AAA 36 336 2 HOH HOH . O 6 HOH AAA 37 337 55 HOH HOH . O 6 HOH AAA 38 338 143 HOH HOH . O 6 HOH AAA 39 339 83 HOH HOH . O 6 HOH AAA 40 340 10 HOH HOH . O 6 HOH AAA 41 341 43 HOH HOH . O 6 HOH AAA 42 342 20 HOH HOH . O 6 HOH AAA 43 343 30 HOH HOH . O 6 HOH AAA 44 344 176 HOH HOH . O 6 HOH AAA 45 345 47 HOH HOH . O 6 HOH AAA 46 346 82 HOH HOH . O 6 HOH AAA 47 347 149 HOH HOH . O 6 HOH AAA 48 348 13 HOH HOH . O 6 HOH AAA 49 349 155 HOH HOH . O 6 HOH AAA 50 350 29 HOH HOH . O 6 HOH AAA 51 351 19 HOH HOH . O 6 HOH AAA 52 352 116 HOH HOH . O 6 HOH AAA 53 353 22 HOH HOH . O 6 HOH AAA 54 354 8 HOH HOH . O 6 HOH AAA 55 355 156 HOH HOH . O 6 HOH AAA 56 356 41 HOH HOH . O 6 HOH AAA 57 357 92 HOH HOH . O 6 HOH AAA 58 358 5 HOH HOH . O 6 HOH AAA 59 359 174 HOH HOH . O 6 HOH AAA 60 360 96 HOH HOH . O 6 HOH AAA 61 361 84 HOH HOH . O 6 HOH AAA 62 362 45 HOH HOH . O 6 HOH AAA 63 363 36 HOH HOH . O 6 HOH AAA 64 364 35 HOH HOH . O 6 HOH AAA 65 365 4 HOH HOH . O 6 HOH AAA 66 366 62 HOH HOH . O 6 HOH AAA 67 367 16 HOH HOH . O 6 HOH AAA 68 368 80 HOH HOH . O 6 HOH AAA 69 369 18 HOH HOH . O 6 HOH AAA 70 370 37 HOH HOH . O 6 HOH AAA 71 371 24 HOH HOH . O 6 HOH AAA 72 372 61 HOH HOH . O 6 HOH AAA 73 373 169 HOH HOH . O 6 HOH AAA 74 374 142 HOH HOH . O 6 HOH AAA 75 375 7 HOH HOH . O 6 HOH AAA 76 376 78 HOH HOH . O 6 HOH AAA 77 377 182 HOH HOH . O 6 HOH AAA 78 378 133 HOH HOH . O 6 HOH AAA 79 379 12 HOH HOH . O 6 HOH AAA 80 380 185 HOH HOH . O 6 HOH AAA 81 381 75 HOH HOH . O 6 HOH AAA 82 382 38 HOH HOH . O 6 HOH AAA 83 383 126 HOH HOH . O 6 HOH AAA 84 384 86 HOH HOH . O 6 HOH AAA 85 385 11 HOH HOH . O 6 HOH AAA 86 386 15 HOH HOH . O 6 HOH AAA 87 387 131 HOH HOH . O 6 HOH AAA 88 388 97 HOH HOH . O 6 HOH AAA 89 389 54 HOH HOH . O 6 HOH AAA 90 390 118 HOH HOH . O 6 HOH AAA 91 391 150 HOH HOH . O 6 HOH AAA 92 392 69 HOH HOH . O 6 HOH AAA 93 393 44 HOH HOH . O 6 HOH AAA 94 394 177 HOH HOH . O 6 HOH AAA 95 395 132 HOH HOH . O 6 HOH AAA 96 396 64 HOH HOH . O 6 HOH AAA 97 397 183 HOH HOH . O 6 HOH AAA 98 398 112 HOH HOH . O 6 HOH AAA 99 399 66 HOH HOH . O 6 HOH AAA 100 400 101 HOH HOH . O 6 HOH AAA 101 401 23 HOH HOH . O 6 HOH AAA 102 402 34 HOH HOH . O 6 HOH AAA 103 403 164 HOH HOH . O 6 HOH AAA 104 404 167 HOH HOH . O 6 HOH AAA 105 405 39 HOH HOH . O 6 HOH AAA 106 406 73 HOH HOH . O 6 HOH AAA 107 407 171 HOH HOH . O 6 HOH AAA 108 408 179 HOH HOH . O 6 HOH AAA 109 409 147 HOH HOH . O 6 HOH AAA 110 410 72 HOH HOH . O 6 HOH AAA 111 411 42 HOH HOH . O 6 HOH AAA 112 412 181 HOH HOH . O 6 HOH AAA 113 413 125 HOH HOH . O 6 HOH AAA 114 414 59 HOH HOH . O 6 HOH AAA 115 415 163 HOH HOH . O 6 HOH AAA 116 416 153 HOH HOH . O 6 HOH AAA 117 417 165 HOH HOH . O 6 HOH AAA 118 418 141 HOH HOH . O 6 HOH AAA 119 419 146 HOH HOH . O 6 HOH AAA 120 420 102 HOH HOH . O 6 HOH AAA 121 421 120 HOH HOH . O 6 HOH AAA 122 422 109 HOH HOH . O 6 HOH AAA 123 423 159 HOH HOH . O 6 HOH AAA 124 424 130 HOH HOH . O 6 HOH AAA 125 425 57 HOH HOH . O 6 HOH AAA 126 426 144 HOH HOH . O 6 HOH AAA 127 427 122 HOH HOH . O 6 HOH AAA 128 428 180 HOH HOH . O 6 HOH AAA 129 429 115 HOH HOH . O 6 HOH AAA 130 430 119 HOH HOH . O 6 HOH AAA 131 431 175 HOH HOH . O 6 HOH AAA 132 432 113 HOH HOH . O 6 HOH AAA 133 433 94 HOH HOH . O 6 HOH AAA 134 434 121 HOH HOH . O 6 HOH AAA 135 435 154 HOH HOH . O 6 HOH AAA 136 436 160 HOH HOH . O 6 HOH AAA 137 437 93 HOH HOH . O 6 HOH AAA 138 438 184 HOH HOH . O 6 HOH AAA 139 439 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 R2U . . . I 5 -34.251 -9.24 -24.309 0.2 24.34 0 O3 R2U 208 AAA 1 HETATM 2 O O4 R2U . . . I 5 -35.311 -12.621 -24.827 0.2 25.96 0 O4 R2U 208 AAA 1 HETATM 3 O O5 R2U . . . I 5 -33.262 -11.84 -24.887 0.2 25.55 0 O5 R2U 208 AAA 1 HETATM 4 O O6 R2U . . . I 5 -35.28 -12.114 -27.589 0.2 24.2 0 O6 R2U 208 AAA 1 HETATM 5 O O7 R2U . . . I 5 -33.408 -11.392 -27.609 0.2 22.82 0 O7 R2U 208 AAA 1 HETATM 6 O O8 R2U . . . I 5 -36.383 -9.508 -27.142 0.2 24.16 0 O8 R2U 208 AAA 1 HETATM 7 RU RU1 R2U . . . I 5 -33.821 -10.25 -26.001 0.2 25.27 0 RU1 R2U 208 AAA 1 HETATM 8 RU RU2 R2U . . . I 5 -35.925 -11.084 -25.978 0.2 25.61 0 RU2 R2U 208 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #