data_8BR7 # _model_server_result.job_id 1Lqf1sJFx6j6MafraRXhLQ _model_server_result.datetime_utc '2025-01-27 20:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8br7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8BR7 # _exptl.entry_id 8BR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.517 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-nitro-~{N}-[2-[2-oxidanylidene-2-[4-(phenylcarbonyl)piperazin-1-yl]ethyl]indazol-5-yl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BR7 _cell.length_a 87.258 _cell.length_b 117.97 _cell.length_c 139.861 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 182 AAA MET 344 1_555 A N TPO 183 AAA TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C TPO 183 AAA TPO 345 1_555 A N SEP 184 AAA SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C SEP 184 AAA SEP 346 1_555 A N ARG 185 AAA ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 B C MET 182 BBB MET 344 1_555 B N TPO 183 BBB TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 B C TPO 183 BBB TPO 345 1_555 B N SEP 184 BBB SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C SEP 184 BBB SEP 346 1_555 B N ARG 185 BBB ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C27 H24 N6 O5 2' _chem_comp.formula_weight 512.517 _chem_comp.id R6R _chem_comp.mon_nstd_flag . _chem_comp.name 3-nitro-~{N}-[2-[2-oxidanylidene-2-[4-(phenylcarbonyl)piperazin-1-yl]ethyl]indazol-5-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 R6R doub 277 n y C13 C12 R6R sing 278 n y C14 C9 R6R sing 279 n y C12 C11 R6R doub 280 n y C9 C10 R6R doub 281 n y C9 C7 R6R sing 282 n n C11 C10 R6R sing 283 n y C3 N4 R6R sing 284 n n C3 C2 R6R sing 285 n n C7 N4 R6R sing 286 n n C7 O8 R6R doub 287 n n N4 C5 R6R sing 288 n n C6 C5 R6R sing 289 n n C6 N1 R6R sing 290 n n C2 N1 R6R sing 291 n n N1 C15 R6R sing 292 n n C15 C16 R6R sing 293 n n C15 O28 R6R doub 294 n n O29 C26 R6R doub 295 n n C27 N17 R6R sing 296 n y C27 C20 R6R doub 297 n y C16 N17 R6R sing 298 n n N17 N18 R6R sing 299 n y C35 C34 R6R doub 300 n y C35 C31 R6R sing 301 n y C21 C20 R6R sing 302 n y C21 C22 R6R doub 303 n y C20 C19 R6R sing 304 n y C26 C31 R6R sing 305 n n C26 N25 R6R sing 306 n n C34 C33 R6R sing 307 n y C31 C30 R6R doub 308 n y N18 C19 R6R doub 309 n y C22 N25 R6R sing 310 n n C22 C23 R6R sing 311 n y C19 C24 R6R sing 312 n y C33 C32 R6R doub 313 n y C30 C32 R6R sing 314 n y C23 C24 R6R doub 315 n y C32 N36 R6R sing 316 n n N36 O37 R6R doub 317 n n N36 O38 R6R doub 318 n n C5 H1 R6R sing 319 n n C5 H2 R6R sing 320 n n C6 H3 R6R sing 321 n n C6 H4 R6R sing 322 n n C10 H5 R6R sing 323 n n C13 H6 R6R sing 324 n n C21 H7 R6R sing 325 n n C24 H8 R6R sing 326 n n C11 H9 R6R sing 327 n n C12 H10 R6R sing 328 n n C14 H11 R6R sing 329 n n C3 H12 R6R sing 330 n n C3 H13 R6R sing 331 n n C2 H14 R6R sing 332 n n C2 H15 R6R sing 333 n n C16 H16 R6R sing 334 n n C16 H17 R6R sing 335 n n C27 H18 R6R sing 336 n n C23 H19 R6R sing 337 n n N25 H20 R6R sing 338 n n C30 H21 R6R sing 339 n n C35 H22 R6R sing 340 n n C34 H23 R6R sing 341 n n C33 H24 R6R sing 342 n n # _atom_sites.entry_id 8BR7 _atom_sites.fract_transf_matrix[1][1] 0.01146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R6R AAA 1 501 501 R6R LIG . D 2 R6R BBB 1 501 501 R6R LIG . E 3 HOH AAA 1 601 7 HOH HOH . E 3 HOH AAA 2 602 21 HOH HOH . E 3 HOH AAA 3 603 22 HOH HOH . E 3 HOH AAA 4 604 8 HOH HOH . E 3 HOH AAA 5 605 3 HOH HOH . E 3 HOH AAA 6 606 4 HOH HOH . E 3 HOH AAA 7 607 1 HOH HOH . E 3 HOH AAA 8 608 13 HOH HOH . E 3 HOH AAA 9 609 19 HOH HOH . E 3 HOH AAA 10 610 11 HOH HOH . E 3 HOH AAA 11 611 12 HOH HOH . E 3 HOH AAA 12 612 34 HOH HOH . E 3 HOH AAA 13 613 14 HOH HOH . E 3 HOH AAA 14 614 20 HOH HOH . E 3 HOH AAA 15 615 9 HOH HOH . E 3 HOH AAA 16 616 10 HOH HOH . F 3 HOH BBB 1 601 33 HOH HOH . F 3 HOH BBB 2 602 32 HOH HOH . F 3 HOH BBB 3 603 31 HOH HOH . F 3 HOH BBB 4 604 30 HOH HOH . F 3 HOH BBB 5 605 16 HOH HOH . F 3 HOH BBB 6 606 37 HOH HOH . F 3 HOH BBB 7 607 15 HOH HOH . F 3 HOH BBB 8 608 28 HOH HOH . F 3 HOH BBB 9 609 40 HOH HOH . F 3 HOH BBB 10 610 18 HOH HOH . F 3 HOH BBB 11 611 23 HOH HOH . F 3 HOH BBB 12 612 26 HOH HOH . F 3 HOH BBB 13 613 17 HOH HOH . F 3 HOH BBB 14 614 2 HOH HOH . F 3 HOH BBB 15 615 6 HOH HOH . F 3 HOH BBB 16 616 39 HOH HOH . F 3 HOH BBB 17 617 25 HOH HOH . F 3 HOH BBB 18 618 27 HOH HOH . F 3 HOH BBB 19 619 29 HOH HOH . F 3 HOH BBB 20 620 35 HOH HOH . F 3 HOH BBB 21 621 5 HOH HOH . F 3 HOH BBB 22 622 38 HOH HOH . F 3 HOH BBB 23 623 36 HOH HOH . F 3 HOH BBB 24 624 24 HOH HOH . F 3 HOH BBB 25 625 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 R6R . . . C 2 27.476 21.743 4.609 1 70.41 0 N1 R6R 501 AAA 1 HETATM 2 C C5 R6R . . . C 2 29.668 20.675 4.373 1 78.67 0 C5 R6R 501 AAA 1 HETATM 3 C C6 R6R . . . C 2 28.179 20.548 4.076 1 73.37 0 C6 R6R 501 AAA 1 HETATM 4 C C7 R6R . . . C 2 31.492 22.031 3.555 1 84.71 0 C7 R6R 501 AAA 1 HETATM 5 C C10 R6R . . . C 2 33.287 23.841 3.508 1 79.88 0 C10 R6R 501 AAA 1 HETATM 6 C C13 R6R . . . C 2 32.146 25.069 1.282 1 83.64 0 C13 R6R 501 AAA 1 HETATM 7 C C15 R6R . . . C 2 26.346 21.56 5.294 1 75.18 0 C15 R6R 501 AAA 1 HETATM 8 C C20 R6R . . . C 2 22.376 20.111 6.31 1 49.69 0 C20 R6R 501 AAA 1 HETATM 9 C C21 R6R . . . C 2 20.975 20.188 6.279 1 46.91 0 C21 R6R 501 AAA 1 HETATM 10 C C22 R6R . . . C 2 20.259 19.951 7.461 1 46.92 0 C22 R6R 501 AAA 1 HETATM 11 C C24 R6R . . . C 2 22.314 19.593 8.67 1 48.28 0 C24 R6R 501 AAA 1 HETATM 12 C C26 R6R . . . C 2 18.076 19.888 6.543 1 40.96 0 C26 R6R 501 AAA 1 HETATM 13 C C11 R6R . . . C 2 33.873 24.989 2.968 1 71.09 0 C11 R6R 501 AAA 1 HETATM 14 C C12 R6R . . . C 2 33.302 25.603 1.854 1 82.1 0 C12 R6R 501 AAA 1 HETATM 15 C C14 R6R . . . C 2 31.566 23.921 1.824 1 70.16 0 C14 R6R 501 AAA 1 HETATM 16 C C9 R6R . . . C 2 32.13 23.3 2.939 1 74.07 0 C9 R6R 501 AAA 1 HETATM 17 O O8 R6R . . . C 2 32.196 21.081 3.901 1 78.59 0 O8 R6R 501 AAA 1 HETATM 18 N N4 R6R . . . C 2 30.174 21.933 3.764 1 80.93 0 N4 R6R 501 AAA 1 HETATM 19 C C3 R6R . . . C 2 29.218 23.031 3.387 1 77.54 0 C3 R6R 501 AAA 1 HETATM 20 C C2 R6R . . . C 2 28.036 23.106 4.372 1 70.51 0 C2 R6R 501 AAA 1 HETATM 21 O O28 R6R . . . C 2 25.716 22.513 5.756 1 70.66 0 O28 R6R 501 AAA 1 HETATM 22 C C16 R6R . . . C 2 25.854 20.124 5.485 1 62.89 0 C16 R6R 501 AAA 1 HETATM 23 N N17 R6R . . . C 2 24.504 20.077 6.064 1 62.45 0 N17 R6R 501 AAA 1 HETATM 24 N N18 R6R . . . C 2 24.334 19.816 7.252 1 62.96 0 N18 R6R 501 AAA 1 HETATM 25 C C27 R6R . . . C 2 23.346 20.27 5.409 1 42.3 0 C27 R6R 501 AAA 1 HETATM 26 C C19 R6R . . . C 2 23.028 19.821 7.501 1 51.6 0 C19 R6R 501 AAA 1 HETATM 27 C C23 R6R . . . C 2 20.931 19.668 8.65 1 51.27 0 C23 R6R 501 AAA 1 HETATM 28 N N25 R6R . . . C 2 18.934 19.989 7.563 1 48.52 0 N25 R6R 501 AAA 1 HETATM 29 O O29 R6R . . . C 2 18.367 19.814 5.351 1 44.54 0 O29 R6R 501 AAA 1 HETATM 30 C C31 R6R . . . C 2 16.633 19.96 6.989 1 41.17 0 C31 R6R 501 AAA 1 HETATM 31 C C30 R6R . . . C 2 16.29 19.434 8.226 1 46.58 0 C30 R6R 501 AAA 1 HETATM 32 C C35 R6R . . . C 2 15.676 20.561 6.193 1 48.25 0 C35 R6R 501 AAA 1 HETATM 33 C C34 R6R . . . C 2 14.356 20.621 6.638 1 49.69 0 C34 R6R 501 AAA 1 HETATM 34 C C33 R6R . . . C 2 14.007 20.092 7.873 1 50.61 0 C33 R6R 501 AAA 1 HETATM 35 C C32 R6R . . . C 2 14.98 19.496 8.672 1 51.49 0 C32 R6R 501 AAA 1 HETATM 36 N N36 R6R . . . C 2 14.659 18.961 9.847 1 58.51 0 N36 R6R 501 AAA 1 HETATM 37 O O38 R6R . . . C 2 15.663 18.444 10.708 1 59.59 0 O38 R6R 501 AAA 1 HETATM 38 O O37 R6R . . . C 2 13.302 18.838 10.221 1 67.09 0 O37 R6R 501 AAA 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #