data_8BR7
#
_model_server_result.job_id            lG52CvnKgetzFksoQvAMpg 
_model_server_result.datetime_utc      '2025-01-27 20:31:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8br7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8BR7 
#
_exptl.entry_id    8BR7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              512.517 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-nitro-~{N}-[2-[2-oxidanylidene-2-[4-(phenylcarbonyl)piperazin-1-yl]ethyl]indazol-5-yl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BR7 
_cell.length_a            87.258 
_cell.length_b            117.97 
_cell.length_c            139.861 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BR7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 182 AAA MET 344 1_555 A N TPO 183 AAA TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C TPO 183 AAA TPO 345 1_555 A N SEP 184 AAA SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 A C SEP 184 AAA SEP 346 1_555 A N ARG 185 AAA ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 B C MET 182 BBB MET 344 1_555 B N TPO 183 BBB TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale5 B C TPO 183 BBB TPO 345 1_555 B N SEP 184 BBB SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 B C SEP 184 BBB SEP 346 1_555 B N ARG 185 BBB ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C27 H24 N6 O5 2' 
_chem_comp.formula_weight    512.517 
_chem_comp.id                R6R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-nitro-~{N}-[2-[2-oxidanylidene-2-[4-(phenylcarbonyl)piperazin-1-yl]ethyl]indazol-5-yl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C14 R6R doub 277 n y 
C13 C12 R6R sing 278 n y 
C14 C9 R6R sing 279 n y 
C12 C11 R6R doub 280 n y 
C9 C10 R6R doub 281 n y 
C9 C7 R6R sing 282 n n 
C11 C10 R6R sing 283 n y 
C3 N4 R6R sing 284 n n 
C3 C2 R6R sing 285 n n 
C7 N4 R6R sing 286 n n 
C7 O8 R6R doub 287 n n 
N4 C5 R6R sing 288 n n 
C6 C5 R6R sing 289 n n 
C6 N1 R6R sing 290 n n 
C2 N1 R6R sing 291 n n 
N1 C15 R6R sing 292 n n 
C15 C16 R6R sing 293 n n 
C15 O28 R6R doub 294 n n 
O29 C26 R6R doub 295 n n 
C27 N17 R6R sing 296 n y 
C27 C20 R6R doub 297 n y 
C16 N17 R6R sing 298 n n 
N17 N18 R6R sing 299 n y 
C35 C34 R6R doub 300 n y 
C35 C31 R6R sing 301 n y 
C21 C20 R6R sing 302 n y 
C21 C22 R6R doub 303 n y 
C20 C19 R6R sing 304 n y 
C26 C31 R6R sing 305 n n 
C26 N25 R6R sing 306 n n 
C34 C33 R6R sing 307 n y 
C31 C30 R6R doub 308 n y 
N18 C19 R6R doub 309 n y 
C22 N25 R6R sing 310 n n 
C22 C23 R6R sing 311 n y 
C19 C24 R6R sing 312 n y 
C33 C32 R6R doub 313 n y 
C30 C32 R6R sing 314 n y 
C23 C24 R6R doub 315 n y 
C32 N36 R6R sing 316 n n 
N36 O37 R6R doub 317 n n 
N36 O38 R6R doub 318 n n 
C5 H1 R6R sing 319 n n 
C5 H2 R6R sing 320 n n 
C6 H3 R6R sing 321 n n 
C6 H4 R6R sing 322 n n 
C10 H5 R6R sing 323 n n 
C13 H6 R6R sing 324 n n 
C21 H7 R6R sing 325 n n 
C24 H8 R6R sing 326 n n 
C11 H9 R6R sing 327 n n 
C12 H10 R6R sing 328 n n 
C14 H11 R6R sing 329 n n 
C3 H12 R6R sing 330 n n 
C3 H13 R6R sing 331 n n 
C2 H14 R6R sing 332 n n 
C2 H15 R6R sing 333 n n 
C16 H16 R6R sing 334 n n 
C16 H17 R6R sing 335 n n 
C27 H18 R6R sing 336 n n 
C23 H19 R6R sing 337 n n 
N25 H20 R6R sing 338 n n 
C30 H21 R6R sing 339 n n 
C35 H22 R6R sing 340 n n 
C34 H23 R6R sing 341 n n 
C33 H24 R6R sing 342 n n 
#
_atom_sites.entry_id                     8BR7 
_atom_sites.fract_transf_matrix[1][1]    0.01146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00715 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 R6R AAA 1 501 501 R6R LIG . 
D 2 R6R BBB 1 501 501 R6R LIG . 
E 3 HOH AAA 1 601 7 HOH HOH . 
E 3 HOH AAA 2 602 21 HOH HOH . 
E 3 HOH AAA 3 603 22 HOH HOH . 
E 3 HOH AAA 4 604 8 HOH HOH . 
E 3 HOH AAA 5 605 3 HOH HOH . 
E 3 HOH AAA 6 606 4 HOH HOH . 
E 3 HOH AAA 7 607 1 HOH HOH . 
E 3 HOH AAA 8 608 13 HOH HOH . 
E 3 HOH AAA 9 609 19 HOH HOH . 
E 3 HOH AAA 10 610 11 HOH HOH . 
E 3 HOH AAA 11 611 12 HOH HOH . 
E 3 HOH AAA 12 612 34 HOH HOH . 
E 3 HOH AAA 13 613 14 HOH HOH . 
E 3 HOH AAA 14 614 20 HOH HOH . 
E 3 HOH AAA 15 615 9 HOH HOH . 
E 3 HOH AAA 16 616 10 HOH HOH . 
F 3 HOH BBB 1 601 33 HOH HOH . 
F 3 HOH BBB 2 602 32 HOH HOH . 
F 3 HOH BBB 3 603 31 HOH HOH . 
F 3 HOH BBB 4 604 30 HOH HOH . 
F 3 HOH BBB 5 605 16 HOH HOH . 
F 3 HOH BBB 6 606 37 HOH HOH . 
F 3 HOH BBB 7 607 15 HOH HOH . 
F 3 HOH BBB 8 608 28 HOH HOH . 
F 3 HOH BBB 9 609 40 HOH HOH . 
F 3 HOH BBB 10 610 18 HOH HOH . 
F 3 HOH BBB 11 611 23 HOH HOH . 
F 3 HOH BBB 12 612 26 HOH HOH . 
F 3 HOH BBB 13 613 17 HOH HOH . 
F 3 HOH BBB 14 614 2 HOH HOH . 
F 3 HOH BBB 15 615 6 HOH HOH . 
F 3 HOH BBB 16 616 39 HOH HOH . 
F 3 HOH BBB 17 617 25 HOH HOH . 
F 3 HOH BBB 18 618 27 HOH HOH . 
F 3 HOH BBB 19 619 29 HOH HOH . 
F 3 HOH BBB 20 620 35 HOH HOH . 
F 3 HOH BBB 21 621 5 HOH HOH . 
F 3 HOH BBB 22 622 38 HOH HOH . 
F 3 HOH BBB 23 623 36 HOH HOH . 
F 3 HOH BBB 24 624 24 HOH HOH . 
F 3 HOH BBB 25 625 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 R6R . . . D 2 43.113 41.185 -6.687 1 109.92 0 N1 R6R 501 BBB 1 
HETATM 2 C C5 R6R . . . D 2 45.316 40.287 -6.157 1 118.67 0 C5 R6R 501 BBB 1 
HETATM 3 C C6 R6R . . . D 2 44.192 40.316 -7.192 1 118.95 0 C6 R6R 501 BBB 1 
HETATM 4 C C7 R6R . . . D 2 46.236 41.621 -4.347 1 110.89 0 C7 R6R 501 BBB 1 
HETATM 5 C C10 R6R . . . D 2 46.299 39.445 -3.041 1 76.18 0 C10 R6R 501 BBB 1 
HETATM 6 C C13 R6R . . . D 2 48.851 38.866 -4.03 1 68.01 0 C13 R6R 501 BBB 1 
HETATM 7 C C15 R6R . . . D 2 41.89 40.719 -6.475 1 92.11 0 C15 R6R 501 BBB 1 
HETATM 8 C C20 R6R . . . D 2 37.77 41.99 -7.533 1 61.75 0 C20 R6R 501 BBB 1 
HETATM 9 C C21 R6R . . . D 2 36.39 41.997 -7.692 1 49.48 0 C21 R6R 501 BBB 1 
HETATM 10 C C22 R6R . . . D 2 35.84 42.262 -8.945 1 50.75 0 C22 R6R 501 BBB 1 
HETATM 11 C C24 R6R . . . D 2 38.09 42.441 -9.866 1 51.69 0 C24 R6R 501 BBB 1 
HETATM 12 C C26 R6R . . . D 2 33.622 42.284 -8.125 1 44.12 0 C26 R6R 501 BBB 1 
HETATM 13 C C11 R6R . . . D 2 46.948 38.273 -2.666 1 67.88 0 C11 R6R 501 BBB 1 
HETATM 14 C C12 R6R . . . D 2 48.221 37.981 -3.157 1 65.83 0 C12 R6R 501 BBB 1 
HETATM 15 C C14 R6R . . . D 2 48.2 40.042 -4.403 1 75.87 0 C14 R6R 501 BBB 1 
HETATM 16 C C9 R6R . . . D 2 46.93 40.332 -3.907 1 86.7 0 C9 R6R 501 BBB 1 
HETATM 17 O O8 R6R . . . D 2 46.402 42.671 -3.726 1 127.36 0 O8 R6R 501 BBB 1 
HETATM 18 N N4 R6R . . . D 2 45.458 41.586 -5.43 1 118.19 0 N4 R6R 501 BBB 1 
HETATM 19 C C3 R6R . . . D 2 44.806 42.841 -5.903 1 104.53 0 C3 R6R 501 BBB 1 
HETATM 20 C C2 R6R . . . D 2 43.382 42.618 -6.422 1 102.74 0 C2 R6R 501 BBB 1 
HETATM 21 O O28 R6R . . . D 2 41.579 39.545 -6.675 1 75.53 0 O28 R6R 501 BBB 1 
HETATM 22 C C16 R6R . . . D 2 40.877 41.711 -5.959 1 88.78 0 C16 R6R 501 BBB 1 
HETATM 23 N N17 R6R . . . D 2 39.781 41.873 -6.91 1 74.34 0 N17 R6R 501 BBB 1 
HETATM 24 N N18 R6R . . . D 2 39.873 42.117 -8.12 1 60.63 0 N18 R6R 501 BBB 1 
HETATM 25 C C27 R6R . . . D 2 38.534 41.786 -6.481 1 56.16 0 C27 R6R 501 BBB 1 
HETATM 26 C C19 R6R . . . D 2 38.631 42.199 -8.605 1 55.39 0 C19 R6R 501 BBB 1 
HETATM 27 C C23 R6R . . . D 2 36.698 42.469 -10.035 1 59.65 0 C23 R6R 501 BBB 1 
HETATM 28 N N25 R6R . . . D 2 34.513 42.265 -9.136 1 54.14 0 N25 R6R 501 BBB 1 
HETATM 29 O O29 R6R . . . D 2 33.884 42.248 -6.914 1 46.67 0 O29 R6R 501 BBB 1 
HETATM 30 C C31 R6R . . . D 2 32.192 42.143 -8.583 1 42.39 0 C31 R6R 501 BBB 1 
HETATM 31 C C30 R6R . . . D 2 31.794 42.519 -9.848 1 42.59 0 C30 R6R 501 BBB 1 
HETATM 32 C C35 R6R . . . D 2 31.285 41.561 -7.714 1 50.13 0 C35 R6R 501 BBB 1 
HETATM 33 C C34 R6R . . . D 2 29.967 41.371 -8.092 1 45.64 0 C34 R6R 501 BBB 1 
HETATM 34 C C33 R6R . . . D 2 29.556 41.761 -9.351 1 45.47 0 C33 R6R 501 BBB 1 
HETATM 35 C C32 R6R . . . D 2 30.467 42.335 -10.219 1 55.19 0 C32 R6R 501 BBB 1 
HETATM 36 N N36 R6R . . . D 2 30.065 42.688 -11.43 1 71.32 0 N36 R6R 501 BBB 1 
HETATM 37 O O38 R6R . . . D 2 30.652 43.813 -12.062 1 85.11 0 O38 R6R 501 BBB 1 
HETATM 38 O O37 R6R . . . D 2 29.089 41.891 -12.107 1 87.65 0 O37 R6R 501 BBB 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#