data_8BRC
#
_model_server_result.job_id            w2bPN9A1_tUHnWh9cKprsQ 
_model_server_result.datetime_utc      '2024-11-05 21:11:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8brc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    8BRC 
#
_exptl.entry_id    8BRC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BRC 
_cell.length_a            136.34 
_cell.length_b            156.4 
_cell.length_c            107.44 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BRC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 48 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 19 A CYS 19 1_555 A SG CYS 39 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf3 A SG CYS 118 A CYS 118 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf4 A SG CYS 137 A CYS 137 1_555 A SG CYS 331 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf5 A SG CYS 158 A CYS 158 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 A SG CYS 161 A CYS 161 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 A SG CYS 171 A CYS 171 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf8 A SG CYS 227 A CYS 227 1_555 A SG CYS 241 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf9 A SG CYS 339 A CYS 339 1_555 A SG CYS 596 A CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf10 A SG CYS 345 A CYS 345 1_555 A SG CYS 377 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf11 A SG CYS 355 A CYS 355 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf12 A SG CYS 402 A CYS 402 1_555 A SG CYS 674 A CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 A SG CYS 418 A CYS 418 1_555 A SG CYS 637 A CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf14 A SG CYS 450 A CYS 450 1_555 A SG CYS 523 A CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf15 A SG CYS 474 A CYS 474 1_555 A SG CYS 665 A CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf16 A SG CYS 484 A CYS 484 1_555 A SG CYS 498 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf17 A SG CYS 495 A CYS 495 1_555 A SG CYS 506 A CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf18 A SG CYS 563 A CYS 563 1_555 A SG CYS 577 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf19 A SG CYS 615 A CYS 615 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 413 A ASN 413 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
metalc ? metalc1 A SD MET 256 A MET 256 1_555 E PT PT . A PT 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc2 A OD1 ASP 392 A ASP 392 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc3 A OH TYR 426 A TYR 426 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc4 A OH TYR 517 A TYR 517 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc5 A NE2 HIS 585 A HIS 585 1_555 B FE FE . A FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc6 B FE FE . A FE 701 1_555 C O7 MLI . A MLI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc7 B FE FE . A FE 701 1_555 C O9 MLI . A MLI 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc8 E PT PT . A PT 704 1_555 F N NH3 . A NH3 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc9 E PT PT . A PT 704 1_555 G N NH3 . A NH3 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc10 E PT PT . A PT 704 1_555 H O HOH . A HOH 827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 245 n n 
C1 O1 NAG sing 246 n n 
C1 O5 NAG sing 247 n n 
C1 H1 NAG sing 248 n n 
C2 C3 NAG sing 249 n n 
C2 N2 NAG sing 250 n n 
C2 H2 NAG sing 251 n n 
C3 C4 NAG sing 252 n n 
C3 O3 NAG sing 253 n n 
C3 H3 NAG sing 254 n n 
C4 C5 NAG sing 255 n n 
C4 O4 NAG sing 256 n n 
C4 H4 NAG sing 257 n n 
C5 C6 NAG sing 258 n n 
C5 O5 NAG sing 259 n n 
C5 H5 NAG sing 260 n n 
C6 O6 NAG sing 261 n n 
C6 H61 NAG sing 262 n n 
C6 H62 NAG sing 263 n n 
C7 C8 NAG sing 264 n n 
C7 N2 NAG sing 265 n n 
C7 O7 NAG doub 266 n n 
C8 H81 NAG sing 267 n n 
C8 H82 NAG sing 268 n n 
C8 H83 NAG sing 269 n n 
N2 HN2 NAG sing 270 n n 
O1 HO1 NAG sing 271 n n 
O3 HO3 NAG sing 272 n n 
O4 HO4 NAG sing 273 n n 
O6 HO6 NAG sing 274 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8BRC 
_atom_sites.fract_transf_matrix[1][1]    0.007335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009308 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 701 701 FE FE . 
C 3 MLI A 1 702 702 MLI MLI . 
D 4 NAG A 1 703 703 NAG NAG . 
E 5 PT A 1 704 1 PT PT . 
F 6 NH3 A 1 705 2 NH3 NH3 . 
G 6 NH3 A 1 706 3 NH3 NH3 . 
H 7 HOH A 1 801 814 HOH HOH . 
H 7 HOH A 2 802 806 HOH HOH . 
H 7 HOH A 3 803 804 HOH HOH . 
H 7 HOH A 4 804 835 HOH HOH . 
H 7 HOH A 5 805 811 HOH HOH . 
H 7 HOH A 6 806 815 HOH HOH . 
H 7 HOH A 7 807 822 HOH HOH . 
H 7 HOH A 8 808 821 HOH HOH . 
H 7 HOH A 9 809 826 HOH HOH . 
H 7 HOH A 10 810 836 HOH HOH . 
H 7 HOH A 11 811 817 HOH HOH . 
H 7 HOH A 12 812 808 HOH HOH . 
H 7 HOH A 13 813 805 HOH HOH . 
H 7 HOH A 14 814 823 HOH HOH . 
H 7 HOH A 15 815 810 HOH HOH . 
H 7 HOH A 16 816 813 HOH HOH . 
H 7 HOH A 17 817 831 HOH HOH . 
H 7 HOH A 18 818 827 HOH HOH . 
H 7 HOH A 19 819 812 HOH HOH . 
H 7 HOH A 20 820 803 HOH HOH . 
H 7 HOH A 21 821 825 HOH HOH . 
H 7 HOH A 22 822 816 HOH HOH . 
H 7 HOH A 23 823 807 HOH HOH . 
H 7 HOH A 24 824 830 HOH HOH . 
H 7 HOH A 25 825 832 HOH HOH . 
H 7 HOH A 26 826 829 HOH HOH . 
H 7 HOH A 27 827 4 HOH HOH . 
H 7 HOH A 28 828 833 HOH HOH . 
H 7 HOH A 29 829 834 HOH HOH . 
H 7 HOH A 30 830 802 HOH HOH . 
H 7 HOH A 31 831 824 HOH HOH . 
H 7 HOH A 32 832 809 HOH HOH . 
H 7 HOH A 33 833 820 HOH HOH . 
H 7 HOH A 34 834 818 HOH HOH . 
H 7 HOH A 35 835 819 HOH HOH . 
H 7 HOH A 36 836 828 HOH HOH . 
H 7 HOH A 37 837 801 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 40.701 60.73 8.195 1 189.25 ? C1 NAG 703 A 1 
HETATM 2 C C2 NAG . . . D 4 39.427 61.535 7.913 1 199.12 ? C2 NAG 703 A 1 
HETATM 3 C C3 NAG . . . D 4 39.575 62.942 8.494 1 205.34 ? C3 NAG 703 A 1 
HETATM 4 C C4 NAG . . . D 4 39.954 62.885 9.971 1 204.85 ? C4 NAG 703 A 1 
HETATM 5 C C5 NAG . . . D 4 41.217 62.042 10.154 1 199.52 ? C5 NAG 703 A 1 
HETATM 6 C C6 NAG . . . D 4 41.588 61.817 11.606 1 196.05 ? C6 NAG 703 A 1 
HETATM 7 C C7 NAG . . . D 4 38.373 62.464 5.845 1 190.35 ? C7 NAG 703 A 1 
HETATM 8 C C8 NAG . . . D 4 36.889 62.279 5.706 1 171.94 ? C8 NAG 703 A 1 
HETATM 9 N N2 NAG . . . D 4 39.034 61.507 6.515 1 195.59 ? N2 NAG 703 A 1 
HETATM 10 O O3 NAG . . . D 4 38.383 63.694 8.311 1 211.61 ? O3 NAG 703 A 1 
HETATM 11 O O4 NAG . . . D 4 40.196 64.211 10.436 1 205.2 ? O4 NAG 703 A 1 
HETATM 12 O O5 NAG . . . D 4 41.019 60.732 9.581 1 193.67 ? O5 NAG 703 A 1 
HETATM 13 O O6 NAG . . . D 4 41.292 62.948 12.431 1 195.16 ? O6 NAG 703 A 1 
HETATM 14 O O7 NAG . . . D 4 38.952 63.438 5.365 1 199.47 ? O7 NAG 703 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#