data_8BRK # _model_server_result.job_id zP6Ow35q-D9XBPkPXFthWw _model_server_result.datetime_utc '2024-10-25 04:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8brk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8BRK # _exptl.entry_id 8BRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.24 _cell.angle_gamma 90 _cell.entry_id 8BRK _cell.length_a 81.535 _cell.length_b 38.986 _cell.length_c 41.525 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? covale ? covale2 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 8BRK _atom_sites.fract_transf_matrix[1][1] 0.012265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001558 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC HEC . C 3 HOH A 1 301 51 HOH HOH . C 3 HOH A 2 302 76 HOH HOH . C 3 HOH A 3 303 42 HOH HOH . C 3 HOH A 4 304 28 HOH HOH . C 3 HOH A 5 305 73 HOH HOH . C 3 HOH A 6 306 53 HOH HOH . C 3 HOH A 7 307 64 HOH HOH . C 3 HOH A 8 308 43 HOH HOH . C 3 HOH A 9 309 65 HOH HOH . C 3 HOH A 10 310 2 HOH HOH . C 3 HOH A 11 311 4 HOH HOH . C 3 HOH A 12 312 33 HOH HOH . C 3 HOH A 13 313 8 HOH HOH . C 3 HOH A 14 314 1 HOH HOH . C 3 HOH A 15 315 47 HOH HOH . C 3 HOH A 16 316 9 HOH HOH . C 3 HOH A 17 317 29 HOH HOH . C 3 HOH A 18 318 70 HOH HOH . C 3 HOH A 19 319 5 HOH HOH . C 3 HOH A 20 320 57 HOH HOH . C 3 HOH A 21 321 55 HOH HOH . C 3 HOH A 22 322 6 HOH HOH . C 3 HOH A 23 323 71 HOH HOH . C 3 HOH A 24 324 16 HOH HOH . C 3 HOH A 25 325 17 HOH HOH . C 3 HOH A 26 326 61 HOH HOH . C 3 HOH A 27 327 30 HOH HOH . C 3 HOH A 28 328 69 HOH HOH . C 3 HOH A 29 329 59 HOH HOH . C 3 HOH A 30 330 11 HOH HOH . C 3 HOH A 31 331 15 HOH HOH . C 3 HOH A 32 332 40 HOH HOH . C 3 HOH A 33 333 66 HOH HOH . C 3 HOH A 34 334 31 HOH HOH . C 3 HOH A 35 335 13 HOH HOH . C 3 HOH A 36 336 34 HOH HOH . C 3 HOH A 37 337 32 HOH HOH . C 3 HOH A 38 338 35 HOH HOH . C 3 HOH A 39 339 12 HOH HOH . C 3 HOH A 40 340 60 HOH HOH . C 3 HOH A 41 341 68 HOH HOH . C 3 HOH A 42 342 26 HOH HOH . C 3 HOH A 43 343 3 HOH HOH . C 3 HOH A 44 344 36 HOH HOH . C 3 HOH A 45 345 54 HOH HOH . C 3 HOH A 46 346 19 HOH HOH . C 3 HOH A 47 347 52 HOH HOH . C 3 HOH A 48 348 39 HOH HOH . C 3 HOH A 49 349 14 HOH HOH . C 3 HOH A 50 350 48 HOH HOH . C 3 HOH A 51 351 18 HOH HOH . C 3 HOH A 52 352 37 HOH HOH . C 3 HOH A 53 353 27 HOH HOH . C 3 HOH A 54 354 41 HOH HOH . C 3 HOH A 55 355 44 HOH HOH . C 3 HOH A 56 356 25 HOH HOH . C 3 HOH A 57 357 50 HOH HOH . C 3 HOH A 58 358 74 HOH HOH . C 3 HOH A 59 359 20 HOH HOH . C 3 HOH A 60 360 10 HOH HOH . C 3 HOH A 61 361 63 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 75 HOH HOH . C 3 HOH A 64 364 22 HOH HOH . C 3 HOH A 65 365 23 HOH HOH . C 3 HOH A 66 366 21 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 24 HOH HOH . C 3 HOH A 69 369 72 HOH HOH . C 3 HOH A 70 370 56 HOH HOH . C 3 HOH A 71 371 7 HOH HOH . C 3 HOH A 72 372 58 HOH HOH . C 3 HOH A 73 373 49 HOH HOH . C 3 HOH A 74 374 45 HOH HOH . C 3 HOH A 75 375 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -14.781 3.667 -8.567 1 16.71 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . B 2 -13.261 4.439 -5.661 1 14.84 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . B 2 -13.38 6.456 -10.083 1 16.78 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . B 2 -15.903 2.568 -11.587 1 17.38 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . B 2 -16.124 0.826 -7.138 1 15.65 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . B 2 -13.524 5.198 -7.987 1 15.75 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . B 2 -13.121 5.402 -6.745 1 15.62 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . B 2 -12.35 6.627 -6.573 1 14.37 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . B 2 -12.403 7.27 -7.879 1 15.19 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . B 2 -13.118 6.257 -8.669 1 15.62 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . B 2 -11.759 8.551 -8.338 1 15.59 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . B 2 -11.801 7.146 -5.312 1 14.73 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . B 2 -13.091 7.834 -4.733 1 14.65 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . B 2 -14.085 6.898 -3.997 1 15.1 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . B 2 -15.26 6.72 -4.376 1 15.24 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . B 2 -13.709 6.309 -2.964 1 14.15 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . B 2 -14.666 4.371 -10.478 1 16.59 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . B 2 -14.053 5.486 -10.94 1 18.09 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . B 2 -14.145 5.725 -12.359 1 18.72 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . B 2 -14.901 4.542 -12.772 1 18.96 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . B 2 -15.155 3.802 -11.558 1 18.27 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . B 2 -13.558 6.898 -13.086 1 21.29 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . B 2 -15.317 4.155 -14.163 1 20.02 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . B 2 -14.156 4.14 -15.092 1 20.81 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . B 2 -15.835 2.031 -9.253 1 16.87 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . B 2 -16.237 1.757 -10.475 1 17.81 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . B 2 -17.041 0.552 -10.689 1 17.67 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . B 2 -17.119 0.074 -9.33 1 16.92 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . B 2 -16.349 1.039 -8.549 1 16.74 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . B 2 -17.606 0.099 -12.013 1 17.83 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . B 2 -17.907 -1.039 -8.738 1 17.72 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . B 2 -18.202 -2.168 -9.685 1 19.19 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . B 2 -14.65 2.752 -6.709 1 17 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . B 2 -15.218 1.615 -6.314 1 16.83 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . B 2 -14.906 1.274 -4.912 1 16.15 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . B 2 -14.039 2.347 -4.467 1 15.53 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . B 2 -13.929 3.174 -5.679 1 15.25 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . B 2 -15.377 0.125 -4.132 1 18.09 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . B 2 -13.394 2.525 -3.148 1 16.24 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . B 2 -11.962 1.947 -3.156 1 17.44 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . B 2 -11.273 2.126 -1.791 1 18.39 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . B 2 -10.012 2.071 -1.671 1 19.12 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . B 2 -11.953 2.29 -0.768 1 19.28 ? O2D HEC 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 43 #