data_8BSB
#
_model_server_result.job_id            gzxydT9JicUEIw520r47nA 
_model_server_result.datetime_utc      '2024-11-24 15:50:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bsb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8BSB 
#
_exptl.entry_id    8BSB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.188 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-LYSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         75.32 
_cell.angle_beta          79.17 
_cell.angle_gamma         73.69 
_cell.entry_id            8BSB 
_cell.length_a            38.337 
_cell.length_b            44.927 
_cell.length_c            56.939 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BSB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C6 H14 N2 O2' 
_chem_comp.formula_weight    146.188 
_chem_comp.id                DLY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-LYSINE 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA DLY sing 70 n n 
N H DLY sing 71 n n 
N H2 DLY sing 72 n n 
CA C DLY sing 73 n n 
CA CB DLY sing 74 n n 
CA HA DLY sing 75 n n 
C O DLY doub 76 n n 
C OXT DLY sing 77 n n 
CB CG DLY sing 78 n n 
CB HB2 DLY sing 79 n n 
CB HB3 DLY sing 80 n n 
CG CD DLY sing 81 n n 
CG HG2 DLY sing 82 n n 
CG HG3 DLY sing 83 n n 
CD CE DLY sing 84 n n 
CD HD2 DLY sing 85 n n 
CD HD3 DLY sing 86 n n 
CE NZ DLY sing 87 n n 
CE HE2 DLY sing 88 n n 
CE HE3 DLY sing 89 n n 
NZ HZ1 DLY sing 90 n n 
NZ HZ2 DLY sing 91 n n 
OXT HXT DLY sing 92 n n 
#
_atom_sites.entry_id                     8BSB 
_atom_sites.fract_transf_matrix[1][1]    0.026084 
_atom_sites.fract_transf_matrix[1][2]    -0.007633 
_atom_sites.fract_transf_matrix[1][3]    -0.003444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023192 
_atom_sites.fract_transf_matrix[2][3]    -0.005052 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018301 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DLY A 1 301 232 DLY DLY . 
D 2 DLY B 1 301 232 DLY DLY . 
E 3 HOH A 1 401 87 HOH HOH . 
E 3 HOH A 2 402 113 HOH HOH . 
E 3 HOH A 3 403 41 HOH HOH . 
E 3 HOH A 4 404 33 HOH HOH . 
E 3 HOH A 5 405 126 HOH HOH . 
E 3 HOH A 6 406 105 HOH HOH . 
E 3 HOH A 7 407 82 HOH HOH . 
E 3 HOH A 8 408 52 HOH HOH . 
E 3 HOH A 9 409 51 HOH HOH . 
E 3 HOH A 10 410 45 HOH HOH . 
E 3 HOH A 11 411 104 HOH HOH . 
E 3 HOH A 12 412 35 HOH HOH . 
E 3 HOH A 13 413 13 HOH HOH . 
E 3 HOH A 14 414 74 HOH HOH . 
E 3 HOH A 15 415 136 HOH HOH . 
E 3 HOH A 16 416 20 HOH HOH . 
E 3 HOH A 17 417 49 HOH HOH . 
E 3 HOH A 18 418 14 HOH HOH . 
E 3 HOH A 19 419 81 HOH HOH . 
E 3 HOH A 20 420 23 HOH HOH . 
E 3 HOH A 21 421 2 HOH HOH . 
E 3 HOH A 22 422 39 HOH HOH . 
E 3 HOH A 23 423 1 HOH HOH . 
E 3 HOH A 24 424 107 HOH HOH . 
E 3 HOH A 25 425 110 HOH HOH . 
E 3 HOH A 26 426 134 HOH HOH . 
E 3 HOH A 27 427 12 HOH HOH . 
E 3 HOH A 28 428 92 HOH HOH . 
E 3 HOH A 29 429 114 HOH HOH . 
E 3 HOH A 30 430 15 HOH HOH . 
E 3 HOH A 31 431 98 HOH HOH . 
E 3 HOH A 32 432 34 HOH HOH . 
E 3 HOH A 33 433 60 HOH HOH . 
E 3 HOH A 34 434 21 HOH HOH . 
E 3 HOH A 35 435 117 HOH HOH . 
E 3 HOH A 36 436 62 HOH HOH . 
E 3 HOH A 37 437 38 HOH HOH . 
E 3 HOH A 38 438 54 HOH HOH . 
E 3 HOH A 39 439 91 HOH HOH . 
E 3 HOH A 40 440 19 HOH HOH . 
E 3 HOH A 41 441 58 HOH HOH . 
E 3 HOH A 42 442 25 HOH HOH . 
E 3 HOH A 43 443 97 HOH HOH . 
E 3 HOH A 44 444 64 HOH HOH . 
E 3 HOH A 45 445 65 HOH HOH . 
E 3 HOH A 46 446 47 HOH HOH . 
E 3 HOH A 47 447 73 HOH HOH . 
E 3 HOH A 48 448 63 HOH HOH . 
E 3 HOH A 49 449 102 HOH HOH . 
E 3 HOH A 50 450 132 HOH HOH . 
E 3 HOH A 51 451 67 HOH HOH . 
E 3 HOH A 52 452 101 HOH HOH . 
E 3 HOH A 53 453 124 HOH HOH . 
E 3 HOH A 54 454 72 HOH HOH . 
E 3 HOH A 55 455 85 HOH HOH . 
E 3 HOH A 56 456 48 HOH HOH . 
E 3 HOH A 57 457 119 HOH HOH . 
E 3 HOH A 58 458 133 HOH HOH . 
E 3 HOH A 59 459 100 HOH HOH . 
E 3 HOH A 60 460 116 HOH HOH . 
E 3 HOH A 61 461 36 HOH HOH . 
E 3 HOH A 62 462 42 HOH HOH . 
E 3 HOH A 63 463 109 HOH HOH . 
E 3 HOH A 64 464 131 HOH HOH . 
F 3 HOH B 1 401 122 HOH HOH . 
F 3 HOH B 2 402 112 HOH HOH . 
F 3 HOH B 3 403 18 HOH HOH . 
F 3 HOH B 4 404 80 HOH HOH . 
F 3 HOH B 5 405 66 HOH HOH . 
F 3 HOH B 6 406 11 HOH HOH . 
F 3 HOH B 7 407 77 HOH HOH . 
F 3 HOH B 8 408 50 HOH HOH . 
F 3 HOH B 9 409 79 HOH HOH . 
F 3 HOH B 10 410 17 HOH HOH . 
F 3 HOH B 11 411 53 HOH HOH . 
F 3 HOH B 12 412 46 HOH HOH . 
F 3 HOH B 13 413 10 HOH HOH . 
F 3 HOH B 14 414 56 HOH HOH . 
F 3 HOH B 15 415 16 HOH HOH . 
F 3 HOH B 16 416 3 HOH HOH . 
F 3 HOH B 17 417 68 HOH HOH . 
F 3 HOH B 18 418 95 HOH HOH . 
F 3 HOH B 19 419 57 HOH HOH . 
F 3 HOH B 20 420 5 HOH HOH . 
F 3 HOH B 21 421 121 HOH HOH . 
F 3 HOH B 22 422 37 HOH HOH . 
F 3 HOH B 23 423 115 HOH HOH . 
F 3 HOH B 24 424 26 HOH HOH . 
F 3 HOH B 25 425 28 HOH HOH . 
F 3 HOH B 26 426 9 HOH HOH . 
F 3 HOH B 27 427 120 HOH HOH . 
F 3 HOH B 28 428 70 HOH HOH . 
F 3 HOH B 29 429 24 HOH HOH . 
F 3 HOH B 30 430 31 HOH HOH . 
F 3 HOH B 31 431 22 HOH HOH . 
F 3 HOH B 32 432 88 HOH HOH . 
F 3 HOH B 33 433 27 HOH HOH . 
F 3 HOH B 34 434 78 HOH HOH . 
F 3 HOH B 35 435 4 HOH HOH . 
F 3 HOH B 36 436 75 HOH HOH . 
F 3 HOH B 37 437 135 HOH HOH . 
F 3 HOH B 38 438 94 HOH HOH . 
F 3 HOH B 39 439 96 HOH HOH . 
F 3 HOH B 40 440 69 HOH HOH . 
F 3 HOH B 41 441 6 HOH HOH . 
F 3 HOH B 42 442 99 HOH HOH . 
F 3 HOH B 43 443 32 HOH HOH . 
F 3 HOH B 44 444 40 HOH HOH . 
F 3 HOH B 45 445 118 HOH HOH . 
F 3 HOH B 46 446 76 HOH HOH . 
F 3 HOH B 47 447 71 HOH HOH . 
F 3 HOH B 48 448 7 HOH HOH . 
F 3 HOH B 49 449 103 HOH HOH . 
F 3 HOH B 50 450 55 HOH HOH . 
F 3 HOH B 51 451 106 HOH HOH . 
F 3 HOH B 52 452 108 HOH HOH . 
F 3 HOH B 53 453 123 HOH HOH . 
F 3 HOH B 54 454 8 HOH HOH . 
F 3 HOH B 55 455 59 HOH HOH . 
F 3 HOH B 56 456 84 HOH HOH . 
F 3 HOH B 57 457 30 HOH HOH . 
F 3 HOH B 58 458 89 HOH HOH . 
F 3 HOH B 59 459 43 HOH HOH . 
F 3 HOH B 60 460 125 HOH HOH . 
F 3 HOH B 61 461 44 HOH HOH . 
F 3 HOH B 62 462 127 HOH HOH . 
F 3 HOH B 63 463 29 HOH HOH . 
F 3 HOH B 64 464 93 HOH HOH . 
F 3 HOH B 65 465 128 HOH HOH . 
F 3 HOH B 66 466 130 HOH HOH . 
F 3 HOH B 67 467 61 HOH HOH . 
F 3 HOH B 68 468 83 HOH HOH . 
F 3 HOH B 69 469 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DLY . . . C 2 12.533 3.773 1.027 1 34.49 ? N DLY 301 A 1 
HETATM 2 C CA DLY . . . C 2 13.269 4.777 0.265 1 33.13 ? CA DLY 301 A 1 
HETATM 3 C C DLY . . . C 2 14.73 4.361 0.135 1 36.22 ? C DLY 301 A 1 
HETATM 4 O O DLY . . . C 2 15.534 5.061 -0.487 1 35.88 ? O DLY 301 A 1 
HETATM 5 C CB DLY . . . C 2 12.661 4.956 -1.126 1 34.5 ? CB DLY 301 A 1 
HETATM 6 C CG DLY . . . C 2 11.17 5.271 -1.134 1 33.98 ? CG DLY 301 A 1 
HETATM 7 C CD DLY . . . C 2 10.866 6.581 -0.43 1 41.09 ? CD DLY 301 A 1 
HETATM 8 C CE DLY . . . C 2 9.455 7.054 -0.75 1 40.25 ? CE DLY 301 A 1 
HETATM 9 N NZ DLY . . . C 2 9.124 8.309 -0.025 1 41.22 ? NZ DLY 301 A 1 
HETATM 10 O OXT DLY . . . C 2 15.138 3.318 0.648 1 33.32 ? OXT DLY 301 A 1 
HETATM 11 H H2 DLY . . . C 2 12.151 3.016 0.58 1 41.67 ? H2 DLY 301 A 1 
HETATM 12 H H DLY . . . C 2 12.952 3.477 1.716 1 41.67 ? H DLY 301 A 1 
HETATM 13 H HA DLY . . . C 2 13.219 5.631 0.723 1 40.03 ? HA DLY 301 A 1 
HETATM 14 H HB2 DLY . . . C 2 12.789 4.135 -1.626 1 41.67 ? HB2 DLY 301 A 1 
HETATM 15 H HB3 DLY . . . C 2 13.117 5.688 -1.57 1 41.67 ? HB3 DLY 301 A 1 
HETATM 16 H HG2 DLY . . . C 2 10.691 4.563 -0.676 1 41.05 ? HG2 DLY 301 A 1 
HETATM 17 H HG3 DLY . . . C 2 10.863 5.341 -2.051 1 41.05 ? HG3 DLY 301 A 1 
HETATM 18 H HD2 DLY . . . C 2 11.492 7.261 -0.726 1 49.59 ? HD2 DLY 301 A 1 
HETATM 19 H HD3 DLY . . . C 2 10.939 6.458 0.529 1 49.59 ? HD3 DLY 301 A 1 
HETATM 20 H HE2 DLY . . . C 2 8.82 6.371 -0.483 1 48.58 ? HE2 DLY 301 A 1 
HETATM 21 H HE3 DLY . . . C 2 9.381 7.223 -1.702 1 48.58 ? HE3 DLY 301 A 1 
HETATM 22 H HZ1 DLY . . . C 2 8.657 8.121 0.711 1 49.74 ? HZ1 DLY 301 A 1 
HETATM 23 H HZ2 DLY . . . C 2 8.638 8.845 -0.546 1 49.74 ? HZ2 DLY 301 A 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#