data_8BSP # _model_server_result.job_id aKUP1M9STAE5Fe8GA6jYWw _model_server_result.datetime_utc '2024-11-28 21:59:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bsp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1603}' # _entry.id 8BSP # _exptl.entry_id 8BSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BSP _cell.length_a 59.962 _cell.length_b 71.771 _cell.length_c 78.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 D C1 NAG . A NAG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8BSP _atom_sites.fract_transf_matrix[1][1] 0.016677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1601 1601 SO4 SO4 . C 2 SO4 A 1 1602 1801 SO4 SO4 . D 3 NAG A 1 1603 1802 NAG NAG . E 4 DMS A 1 1604 2101 DMS DMS . F 5 RD9 A 1 1605 2102 RD9 XXX . G 2 SO4 A 1 1606 1 SO4 SO4 . H 2 SO4 A 1 1607 2 SO4 SO4 . I 2 SO4 A 1 1608 3 SO4 SO4 . J 6 HOH A 1 1701 114 HOH HOH . J 6 HOH A 2 1702 85 HOH HOH . J 6 HOH A 3 1703 104 HOH HOH . J 6 HOH A 4 1704 214 HOH HOH . J 6 HOH A 5 1705 52 HOH HOH . J 6 HOH A 6 1706 38 HOH HOH . J 6 HOH A 7 1707 96 HOH HOH . J 6 HOH A 8 1708 133 HOH HOH . J 6 HOH A 9 1709 132 HOH HOH . J 6 HOH A 10 1710 180 HOH HOH . J 6 HOH A 11 1711 105 HOH HOH . J 6 HOH A 12 1712 62 HOH HOH . J 6 HOH A 13 1713 1 HOH HOH . J 6 HOH A 14 1714 88 HOH HOH . J 6 HOH A 15 1715 43 HOH HOH . J 6 HOH A 16 1716 20 HOH HOH . J 6 HOH A 17 1717 54 HOH HOH . J 6 HOH A 18 1718 31 HOH HOH . J 6 HOH A 19 1719 39 HOH HOH . J 6 HOH A 20 1720 220 HOH HOH . J 6 HOH A 21 1721 58 HOH HOH . J 6 HOH A 22 1722 109 HOH HOH . J 6 HOH A 23 1723 48 HOH HOH . J 6 HOH A 24 1724 82 HOH HOH . J 6 HOH A 25 1725 80 HOH HOH . J 6 HOH A 26 1726 47 HOH HOH . J 6 HOH A 27 1727 122 HOH HOH . J 6 HOH A 28 1728 11 HOH HOH . J 6 HOH A 29 1729 26 HOH HOH . J 6 HOH A 30 1730 2 HOH HOH . J 6 HOH A 31 1731 63 HOH HOH . J 6 HOH A 32 1732 94 HOH HOH . J 6 HOH A 33 1733 110 HOH HOH . J 6 HOH A 34 1734 113 HOH HOH . J 6 HOH A 35 1735 40 HOH HOH . J 6 HOH A 36 1736 30 HOH HOH . J 6 HOH A 37 1737 3 HOH HOH . J 6 HOH A 38 1738 44 HOH HOH . J 6 HOH A 39 1739 101 HOH HOH . J 6 HOH A 40 1740 10 HOH HOH . J 6 HOH A 41 1741 59 HOH HOH . J 6 HOH A 42 1742 219 HOH HOH . J 6 HOH A 43 1743 33 HOH HOH . J 6 HOH A 44 1744 36 HOH HOH . J 6 HOH A 45 1745 153 HOH HOH . J 6 HOH A 46 1746 147 HOH HOH . J 6 HOH A 47 1747 79 HOH HOH . J 6 HOH A 48 1748 56 HOH HOH . J 6 HOH A 49 1749 70 HOH HOH . J 6 HOH A 50 1750 128 HOH HOH . J 6 HOH A 51 1751 165 HOH HOH . J 6 HOH A 52 1752 134 HOH HOH . J 6 HOH A 53 1753 6 HOH HOH . J 6 HOH A 54 1754 120 HOH HOH . J 6 HOH A 55 1755 35 HOH HOH . J 6 HOH A 56 1756 151 HOH HOH . J 6 HOH A 57 1757 50 HOH HOH . J 6 HOH A 58 1758 7 HOH HOH . J 6 HOH A 59 1759 5 HOH HOH . J 6 HOH A 60 1760 55 HOH HOH . J 6 HOH A 61 1761 15 HOH HOH . J 6 HOH A 62 1762 81 HOH HOH . J 6 HOH A 63 1763 76 HOH HOH . J 6 HOH A 64 1764 45 HOH HOH . J 6 HOH A 65 1765 73 HOH HOH . J 6 HOH A 66 1766 42 HOH HOH . J 6 HOH A 67 1767 108 HOH HOH . J 6 HOH A 68 1768 107 HOH HOH . J 6 HOH A 69 1769 87 HOH HOH . J 6 HOH A 70 1770 152 HOH HOH . J 6 HOH A 71 1771 16 HOH HOH . J 6 HOH A 72 1772 61 HOH HOH . J 6 HOH A 73 1773 71 HOH HOH . J 6 HOH A 74 1774 17 HOH HOH . J 6 HOH A 75 1775 4 HOH HOH . J 6 HOH A 76 1776 37 HOH HOH . J 6 HOH A 77 1777 111 HOH HOH . J 6 HOH A 78 1778 140 HOH HOH . J 6 HOH A 79 1779 32 HOH HOH . J 6 HOH A 80 1780 9 HOH HOH . J 6 HOH A 81 1781 18 HOH HOH . J 6 HOH A 82 1782 130 HOH HOH . J 6 HOH A 83 1783 168 HOH HOH . J 6 HOH A 84 1784 148 HOH HOH . J 6 HOH A 85 1785 46 HOH HOH . J 6 HOH A 86 1786 23 HOH HOH . J 6 HOH A 87 1787 8 HOH HOH . J 6 HOH A 88 1788 65 HOH HOH . J 6 HOH A 89 1789 19 HOH HOH . J 6 HOH A 90 1790 69 HOH HOH . J 6 HOH A 91 1791 28 HOH HOH . J 6 HOH A 92 1792 21 HOH HOH . J 6 HOH A 93 1793 51 HOH HOH . J 6 HOH A 94 1794 12 HOH HOH . J 6 HOH A 95 1795 93 HOH HOH . J 6 HOH A 96 1796 90 HOH HOH . J 6 HOH A 97 1797 221 HOH HOH . J 6 HOH A 98 1798 66 HOH HOH . J 6 HOH A 99 1799 216 HOH HOH . J 6 HOH A 100 1800 86 HOH HOH . J 6 HOH A 101 1801 27 HOH HOH . J 6 HOH A 102 1802 196 HOH HOH . J 6 HOH A 103 1803 150 HOH HOH . J 6 HOH A 104 1804 116 HOH HOH . J 6 HOH A 105 1805 22 HOH HOH . J 6 HOH A 106 1806 146 HOH HOH . J 6 HOH A 107 1807 163 HOH HOH . J 6 HOH A 108 1808 75 HOH HOH . J 6 HOH A 109 1809 74 HOH HOH . J 6 HOH A 110 1810 98 HOH HOH . J 6 HOH A 111 1811 141 HOH HOH . J 6 HOH A 112 1812 129 HOH HOH . J 6 HOH A 113 1813 137 HOH HOH . J 6 HOH A 114 1814 126 HOH HOH . J 6 HOH A 115 1815 156 HOH HOH . J 6 HOH A 116 1816 149 HOH HOH . J 6 HOH A 117 1817 84 HOH HOH . J 6 HOH A 118 1818 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 34.142 20.934 0.85 1 41.31 ? C1 NAG 1603 A 1 HETATM 2 C C2 NAG . . . D 3 35.172 21.442 1.86 1 52.52 ? C2 NAG 1603 A 1 HETATM 3 C C3 NAG . . . D 3 36.584 21.282 1.304 1 53.18 ? C3 NAG 1603 A 1 HETATM 4 C C4 NAG . . . D 3 36.828 19.844 0.871 1 50.06 ? C4 NAG 1603 A 1 HETATM 5 C C5 NAG . . . D 3 35.745 19.397 -0.107 1 48.1 ? C5 NAG 1603 A 1 HETATM 6 C C6 NAG . . . D 3 35.854 17.936 -0.481 1 52.02 ? C6 NAG 1603 A 1 HETATM 7 C C7 NAG . . . D 3 34.121 23.193 3.225 1 57.06 ? C7 NAG 1603 A 1 HETATM 8 C C8 NAG . . . D 3 33.974 24.668 3.448 1 62.57 ? C8 NAG 1603 A 1 HETATM 9 N N2 NAG . . . D 3 34.919 22.83 2.215 1 54.6 ? N2 NAG 1603 A 1 HETATM 10 O O3 NAG . . . D 3 37.523 21.648 2.308 1 54.58 ? O3 NAG 1603 A 1 HETATM 11 O O4 NAG . . . D 3 38.105 19.742 0.25 1 49.13 ? O4 NAG 1603 A 1 HETATM 12 O O5 NAG . . . D 3 34.449 19.576 0.485 1 47.53 ? O5 NAG 1603 A 1 HETATM 13 O O6 NAG . . . D 3 35.473 17.093 0.598 1 53.66 ? O6 NAG 1603 A 1 HETATM 14 O O7 NAG . . . D 3 33.54 22.368 3.924 1 57.31 ? O7 NAG 1603 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #