data_8BSR # _model_server_result.job_id YDiCqoHC5URvNKp2X7RhbQ _model_server_result.datetime_utc '2024-11-13 06:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1603}' # _entry.id 8BSR # _exptl.entry_id 8BSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BSR _cell.length_a 60.065 _cell.length_b 71.808 _cell.length_c 78.436 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 D C1 NAG . A NAG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 255 n n C1 O1 NAG sing 256 n n C1 O5 NAG sing 257 n n C1 H1 NAG sing 258 n n C2 C3 NAG sing 259 n n C2 N2 NAG sing 260 n n C2 H2 NAG sing 261 n n C3 C4 NAG sing 262 n n C3 O3 NAG sing 263 n n C3 H3 NAG sing 264 n n C4 C5 NAG sing 265 n n C4 O4 NAG sing 266 n n C4 H4 NAG sing 267 n n C5 C6 NAG sing 268 n n C5 O5 NAG sing 269 n n C5 H5 NAG sing 270 n n C6 O6 NAG sing 271 n n C6 H61 NAG sing 272 n n C6 H62 NAG sing 273 n n C7 C8 NAG sing 274 n n C7 N2 NAG sing 275 n n C7 O7 NAG doub 276 n n C8 H81 NAG sing 277 n n C8 H82 NAG sing 278 n n C8 H83 NAG sing 279 n n N2 HN2 NAG sing 280 n n O1 HO1 NAG sing 281 n n O3 HO3 NAG sing 282 n n O4 HO4 NAG sing 283 n n O6 HO6 NAG sing 284 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8BSR _atom_sites.fract_transf_matrix[1][1] 0.016649 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1601 1601 SO4 SO4 . C 2 SO4 A 1 1602 1801 SO4 SO4 . D 3 NAG A 1 1603 1802 NAG NAG . E 4 DMS A 1 1604 2101 DMS DMS . F 5 RCU A 1 1605 2102 RCU XXX . G 6 EDO A 1 1606 2103 EDO EDO . H 6 EDO A 1 1607 2104 EDO EDO . I 6 EDO A 1 1608 2105 EDO EDO . J 2 SO4 A 1 1609 1 SO4 SO4 . K 2 SO4 A 1 1610 2 SO4 SO4 . L 2 SO4 A 1 1611 3 SO4 SO4 . M 2 SO4 A 1 1612 4 SO4 SO4 . N 7 HOH A 1 1701 104 HOH HOH . N 7 HOH A 2 1702 52 HOH HOH . N 7 HOH A 3 1703 85 HOH HOH . N 7 HOH A 4 1704 96 HOH HOH . N 7 HOH A 5 1705 214 HOH HOH . N 7 HOH A 6 1706 38 HOH HOH . N 7 HOH A 7 1707 105 HOH HOH . N 7 HOH A 8 1708 109 HOH HOH . N 7 HOH A 9 1709 54 HOH HOH . N 7 HOH A 10 1710 220 HOH HOH . N 7 HOH A 11 1711 113 HOH HOH . N 7 HOH A 12 1712 20 HOH HOH . N 7 HOH A 13 1713 122 HOH HOH . N 7 HOH A 14 1714 58 HOH HOH . N 7 HOH A 15 1715 1 HOH HOH . N 7 HOH A 16 1716 88 HOH HOH . N 7 HOH A 17 1717 31 HOH HOH . N 7 HOH A 18 1718 62 HOH HOH . N 7 HOH A 19 1719 43 HOH HOH . N 7 HOH A 20 1720 132 HOH HOH . N 7 HOH A 21 1721 224 HOH HOH . N 7 HOH A 22 1722 219 HOH HOH . N 7 HOH A 23 1723 33 HOH HOH . N 7 HOH A 24 1724 147 HOH HOH . N 7 HOH A 25 1725 63 HOH HOH . N 7 HOH A 26 1726 94 HOH HOH . N 7 HOH A 27 1727 80 HOH HOH . N 7 HOH A 28 1728 226 HOH HOH . N 7 HOH A 29 1729 11 HOH HOH . N 7 HOH A 30 1730 40 HOH HOH . N 7 HOH A 31 1731 30 HOH HOH . N 7 HOH A 32 1732 48 HOH HOH . N 7 HOH A 33 1733 133 HOH HOH . N 7 HOH A 34 1734 3 HOH HOH . N 7 HOH A 35 1735 6 HOH HOH . N 7 HOH A 36 1736 59 HOH HOH . N 7 HOH A 37 1737 107 HOH HOH . N 7 HOH A 38 1738 2 HOH HOH . N 7 HOH A 39 1739 222 HOH HOH . N 7 HOH A 40 1740 50 HOH HOH . N 7 HOH A 41 1741 39 HOH HOH . N 7 HOH A 42 1742 10 HOH HOH . N 7 HOH A 43 1743 26 HOH HOH . N 7 HOH A 44 1744 110 HOH HOH . N 7 HOH A 45 1745 36 HOH HOH . N 7 HOH A 46 1746 223 HOH HOH . N 7 HOH A 47 1747 44 HOH HOH . N 7 HOH A 48 1748 73 HOH HOH . N 7 HOH A 49 1749 152 HOH HOH . N 7 HOH A 50 1750 25 HOH HOH . N 7 HOH A 51 1751 56 HOH HOH . N 7 HOH A 52 1752 70 HOH HOH . N 7 HOH A 53 1753 82 HOH HOH . N 7 HOH A 54 1754 17 HOH HOH . N 7 HOH A 55 1755 47 HOH HOH . N 7 HOH A 56 1756 151 HOH HOH . N 7 HOH A 57 1757 79 HOH HOH . N 7 HOH A 58 1758 87 HOH HOH . N 7 HOH A 59 1759 216 HOH HOH . N 7 HOH A 60 1760 35 HOH HOH . N 7 HOH A 61 1761 120 HOH HOH . N 7 HOH A 62 1762 61 HOH HOH . N 7 HOH A 63 1763 42 HOH HOH . N 7 HOH A 64 1764 16 HOH HOH . N 7 HOH A 65 1765 7 HOH HOH . N 7 HOH A 66 1766 140 HOH HOH . N 7 HOH A 67 1767 55 HOH HOH . N 7 HOH A 68 1768 76 HOH HOH . N 7 HOH A 69 1769 23 HOH HOH . N 7 HOH A 70 1770 101 HOH HOH . N 7 HOH A 71 1771 5 HOH HOH . N 7 HOH A 72 1772 111 HOH HOH . N 7 HOH A 73 1773 128 HOH HOH . N 7 HOH A 74 1774 71 HOH HOH . N 7 HOH A 75 1775 108 HOH HOH . N 7 HOH A 76 1776 15 HOH HOH . N 7 HOH A 77 1777 8 HOH HOH . N 7 HOH A 78 1778 134 HOH HOH . N 7 HOH A 79 1779 153 HOH HOH . N 7 HOH A 80 1780 19 HOH HOH . N 7 HOH A 81 1781 225 HOH HOH . N 7 HOH A 82 1782 9 HOH HOH . N 7 HOH A 83 1783 4 HOH HOH . N 7 HOH A 84 1784 148 HOH HOH . N 7 HOH A 85 1785 32 HOH HOH . N 7 HOH A 86 1786 130 HOH HOH . N 7 HOH A 87 1787 21 HOH HOH . N 7 HOH A 88 1788 18 HOH HOH . N 7 HOH A 89 1789 168 HOH HOH . N 7 HOH A 90 1790 81 HOH HOH . N 7 HOH A 91 1791 12 HOH HOH . N 7 HOH A 92 1792 46 HOH HOH . N 7 HOH A 93 1793 69 HOH HOH . N 7 HOH A 94 1794 93 HOH HOH . N 7 HOH A 95 1795 28 HOH HOH . N 7 HOH A 96 1796 51 HOH HOH . N 7 HOH A 97 1797 227 HOH HOH . N 7 HOH A 98 1798 163 HOH HOH . N 7 HOH A 99 1799 65 HOH HOH . N 7 HOH A 100 1800 37 HOH HOH . N 7 HOH A 101 1801 86 HOH HOH . N 7 HOH A 102 1802 27 HOH HOH . N 7 HOH A 103 1803 90 HOH HOH . N 7 HOH A 104 1804 98 HOH HOH . N 7 HOH A 105 1805 66 HOH HOH . N 7 HOH A 106 1806 116 HOH HOH . N 7 HOH A 107 1807 146 HOH HOH . N 7 HOH A 108 1808 74 HOH HOH . N 7 HOH A 109 1809 129 HOH HOH . N 7 HOH A 110 1810 124 HOH HOH . N 7 HOH A 111 1811 137 HOH HOH . N 7 HOH A 112 1812 126 HOH HOH . N 7 HOH A 113 1813 84 HOH HOH . N 7 HOH A 114 1814 221 HOH HOH . N 7 HOH A 115 1815 156 HOH HOH . N 7 HOH A 116 1816 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 34.177 20.877 0.824 1 36.57 ? C1 NAG 1603 A 1 HETATM 2 C C2 NAG . . . D 3 35.203 21.31 1.868 1 41.63 ? C2 NAG 1603 A 1 HETATM 3 C C3 NAG . . . D 3 36.619 21.136 1.325 1 41.23 ? C3 NAG 1603 A 1 HETATM 4 C C4 NAG . . . D 3 36.832 19.712 0.829 1 40.9 ? C4 NAG 1603 A 1 HETATM 5 C C5 NAG . . . D 3 35.75 19.338 -0.182 1 39.78 ? C5 NAG 1603 A 1 HETATM 6 C C6 NAG . . . D 3 35.823 17.893 -0.623 1 41.43 ? C6 NAG 1603 A 1 HETATM 7 C C7 NAG . . . D 3 34.136 23.041 3.253 1 43.85 ? C7 NAG 1603 A 1 HETATM 8 C C8 NAG . . . D 3 34.035 24.509 3.536 1 47.44 ? C8 NAG 1603 A 1 HETATM 9 N N2 NAG . . . D 3 34.981 22.689 2.277 1 41.95 ? N2 NAG 1603 A 1 HETATM 10 O O3 NAG . . . D 3 37.553 21.436 2.355 1 44.41 ? O3 NAG 1603 A 1 HETATM 11 O O4 NAG . . . D 3 38.121 19.612 0.231 1 40.65 ? O4 NAG 1603 A 1 HETATM 12 O O5 NAG . . . D 3 34.451 19.525 0.404 1 38.4 ? O5 NAG 1603 A 1 HETATM 13 O O6 NAG . . . D 3 35.445 17.005 0.422 1 42.07 ? O6 NAG 1603 A 1 HETATM 14 O O7 NAG . . . D 3 33.474 22.21 3.874 1 47.61 ? O7 NAG 1603 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #