data_8BST # _model_server_result.job_id S2iQYbW6PqvoazMZtpUtAg _model_server_result.datetime_utc '2024-11-13 10:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XA","auth_seq_id":908}' # _entry.id 8BST # _exptl.entry_id 8BST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.99 _cell.angle_gamma 90 _cell.entry_id 8BST _cell.length_a 69.412 _cell.length_b 101.597 _cell.length_c 83.407 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BST _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,YA,ZA 1 1 C,D,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,AB,BB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 S N N ? 8 FA N N ? 8 GA N N ? 8 HA N N ? 8 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 751 1_555 A SG CYS 257 A CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 203 B CYS 751 1_555 B SG CYS 257 B CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A NE2 HIS 47 A HIS 475 1_555 H ZN ZN . A ZN 904 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A NE2 HIS 47 A HIS 475 1_555 JA ZN ZN . C ZN 902 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 A ND1 HIS 82 A HIS 510 1_555 I ZN ZN . A ZN 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 A OD2 ASP 242 A ASP 790 1_555 G ZN ZN . A ZN 903 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 A ND1 HIS 245 A HIS 793 1_555 G ZN ZN . A ZN 903 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A OE1 GLU 249 A GLU 797 1_555 J ZN ZN . A ZN 906 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.212 ? metalc ? metalc7 G ZN ZN . A ZN 903 1_555 C NE2 HIS 47 C HIS 475 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 H ZN ZN . A ZN 904 1_555 C OE1 GLU 249 C GLU 797 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc9 I ZN ZN . A ZN 905 1_555 N O4 SO4 . A SO4 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc10 J ZN ZN . A ZN 906 1_555 C NE2 HIS 47 C HIS 475 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.3 ? metalc ? metalc11 B ND1 HIS 47 B HIS 475 1_555 V ZN ZN . B ZN 903 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.302 ? metalc ? metalc12 B NE2 HIS 47 B HIS 475 1_555 Y ZN ZN . B ZN 906 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.3 ? metalc ? metalc13 B ND1 HIS 82 B HIS 510 1_555 X ZN ZN . B ZN 905 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 B ND1 HIS 82 B HIS 510 1_555 Z ZN ZN . B ZN 907 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 B OD1 ASP 242 B ASP 790 1_555 W ZN ZN . B ZN 904 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.047 ? metalc ? metalc16 B NE2 HIS 245 B HIS 793 1_555 U ZN ZN . B ZN 902 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.302 ? metalc ? metalc17 B ND1 HIS 245 B HIS 793 1_555 W ZN ZN . B ZN 904 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.301 ? metalc ? metalc18 U ZN ZN . B ZN 902 1_555 ZA O HOH . B HOH 1022 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc19 V ZN ZN . B ZN 903 1_656 D ND1 HIS 47 D HIS 475 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 V ZN ZN . B ZN 903 1_555 BB O HOH . D HOH 1024 1_454 ? A ? ? A ? ? ? ? ? ? ? 2.365 ? metalc ? metalc21 W ZN ZN . B ZN 904 1_555 DA O2 SO4 . B SO4 911 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc22 Y ZN ZN . B ZN 906 1_656 D ND1 HIS 47 D HIS 475 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.301 ? metalc ? metalc23 C ND1 HIS 82 C HIS 510 1_555 KA ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc24 C OD2 ASP 242 C ASP 790 1_555 JA ZN ZN . C ZN 902 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.072 ? metalc ? metalc25 C ND1 HIS 245 C HIS 793 1_555 JA ZN ZN . C ZN 902 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.304 ? metalc ? metalc26 D OD1 ASP 242 D ASP 790 1_555 SA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc27 D ND1 HIS 245 D HIS 793 1_555 SA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc28 QA OXT ACT . D ACT 901 1_555 SA ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 8BST _atom_sites.fract_transf_matrix[1][1] 0.014407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005817 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACT A 1 901 901 ACT ACT . F 2 ACT A 1 902 904 ACT ACT . G 3 ZN A 1 903 2 ZN ZN . H 3 ZN A 1 904 5 ZN ZN . I 3 ZN A 1 905 8 ZN ZN . J 3 ZN A 1 906 15 ZN ZN . K 4 CL A 1 907 11 CL CL . L 4 CL A 1 908 15 CL CL . M 5 SO4 A 1 909 6 SO4 SO4 . N 5 SO4 A 1 910 8 SO4 SO4 . O 5 SO4 A 1 911 13 SO4 SO4 . P 5 SO4 A 1 912 18 SO4 SO4 . Q 6 PEG A 1 913 901 PEG PEG . R 7 KAI A 1 914 5 KAI KAI . S 8 GOL A 1 915 6 GOL GOL . T 2 ACT B 1 901 902 ACT ACT . U 3 ZN B 1 902 9 ZN ZN . V 3 ZN B 1 903 12 ZN ZN . W 3 ZN B 1 904 16 ZN ZN . X 3 ZN B 1 905 18 ZN ZN . Y 3 ZN B 1 906 19 ZN ZN . Z 3 ZN B 1 907 21 ZN ZN . AA 4 CL B 1 908 2 CL CL . BA 4 CL B 1 909 13 CL CL . CA 5 SO4 B 1 910 3 SO4 SO4 . DA 5 SO4 B 1 911 12 SO4 SO4 . EA 7 KAI B 1 912 6 KAI KAI . FA 8 GOL B 1 913 2 GOL GOL . GA 8 GOL B 1 914 5 GOL GOL . HA 8 GOL B 1 915 7 GOL GOL . IA 2 ACT C 1 901 903 ACT ACT . JA 3 ZN C 1 902 4 ZN ZN . KA 3 ZN C 1 903 20 ZN ZN . LA 4 CL C 1 904 7 CL CL . MA 5 SO4 C 1 905 4 SO4 SO4 . NA 5 SO4 C 1 906 5 SO4 SO4 . OA 5 SO4 C 1 907 21 SO4 SO4 . PA 7 KAI C 1 908 7 KAI KAI . QA 2 ACT D 1 901 905 ACT ACT . RA 2 ACT D 1 902 906 ACT ACT . SA 3 ZN D 1 903 10 ZN ZN . TA 4 CL D 1 904 12 CL CL . UA 4 CL D 1 905 14 CL CL . VA 5 SO4 D 1 906 11 SO4 SO4 . WA 7 KAI D 1 907 8 KAI KAI . XA 8 GOL D 1 908 4 GOL GOL . YA 9 HOH A 1 1001 7 HOH HOH . YA 9 HOH A 2 1002 3 HOH HOH . YA 9 HOH A 3 1003 4 HOH HOH . YA 9 HOH A 4 1004 89 HOH HOH . YA 9 HOH A 5 1005 132 HOH HOH . YA 9 HOH A 6 1006 177 HOH HOH . YA 9 HOH A 7 1007 148 HOH HOH . YA 9 HOH A 8 1008 160 HOH HOH . YA 9 HOH A 9 1009 153 HOH HOH . YA 9 HOH A 10 1010 20 HOH HOH . YA 9 HOH A 11 1011 5 HOH HOH . YA 9 HOH A 12 1012 155 HOH HOH . YA 9 HOH A 13 1013 154 HOH HOH . YA 9 HOH A 14 1014 81 HOH HOH . YA 9 HOH A 15 1015 156 HOH HOH . YA 9 HOH A 16 1016 2 HOH HOH . YA 9 HOH A 17 1017 192 HOH HOH . YA 9 HOH A 18 1018 106 HOH HOH . YA 9 HOH A 19 1019 67 HOH HOH . YA 9 HOH A 20 1020 167 HOH HOH . YA 9 HOH A 21 1021 207 HOH HOH . YA 9 HOH A 22 1022 152 HOH HOH . YA 9 HOH A 23 1023 137 HOH HOH . YA 9 HOH A 24 1024 157 HOH HOH . ZA 9 HOH B 1 1001 8 HOH HOH . ZA 9 HOH B 2 1002 142 HOH HOH . ZA 9 HOH B 3 1003 17 HOH HOH . ZA 9 HOH B 4 1004 26 HOH HOH . ZA 9 HOH B 5 1005 194 HOH HOH . ZA 9 HOH B 6 1006 16 HOH HOH . ZA 9 HOH B 7 1007 35 HOH HOH . ZA 9 HOH B 8 1008 184 HOH HOH . ZA 9 HOH B 9 1009 143 HOH HOH . ZA 9 HOH B 10 1010 201 HOH HOH . ZA 9 HOH B 11 1011 140 HOH HOH . ZA 9 HOH B 12 1012 113 HOH HOH . ZA 9 HOH B 13 1013 120 HOH HOH . ZA 9 HOH B 14 1014 214 HOH HOH . ZA 9 HOH B 15 1015 199 HOH HOH . ZA 9 HOH B 16 1016 96 HOH HOH . ZA 9 HOH B 17 1017 70 HOH HOH . ZA 9 HOH B 18 1018 198 HOH HOH . ZA 9 HOH B 19 1019 183 HOH HOH . ZA 9 HOH B 20 1020 151 HOH HOH . ZA 9 HOH B 21 1021 200 HOH HOH . ZA 9 HOH B 22 1022 208 HOH HOH . ZA 9 HOH B 23 1023 176 HOH HOH . ZA 9 HOH B 24 1024 135 HOH HOH . ZA 9 HOH B 25 1025 217 HOH HOH . ZA 9 HOH B 26 1026 149 HOH HOH . ZA 9 HOH B 27 1027 175 HOH HOH . AB 9 HOH C 1 1001 159 HOH HOH . AB 9 HOH C 2 1002 48 HOH HOH . AB 9 HOH C 3 1003 144 HOH HOH . AB 9 HOH C 4 1004 24 HOH HOH . AB 9 HOH C 5 1005 60 HOH HOH . AB 9 HOH C 6 1006 213 HOH HOH . AB 9 HOH C 7 1007 172 HOH HOH . AB 9 HOH C 8 1008 196 HOH HOH . AB 9 HOH C 9 1009 114 HOH HOH . AB 9 HOH C 10 1010 147 HOH HOH . AB 9 HOH C 11 1011 212 HOH HOH . AB 9 HOH C 12 1012 95 HOH HOH . AB 9 HOH C 13 1013 197 HOH HOH . AB 9 HOH C 14 1014 185 HOH HOH . AB 9 HOH C 15 1015 205 HOH HOH . AB 9 HOH C 16 1016 193 HOH HOH . AB 9 HOH C 17 1017 211 HOH HOH . BB 9 HOH D 1 1001 179 HOH HOH . BB 9 HOH D 2 1002 22 HOH HOH . BB 9 HOH D 3 1003 126 HOH HOH . BB 9 HOH D 4 1004 27 HOH HOH . BB 9 HOH D 5 1005 124 HOH HOH . BB 9 HOH D 6 1006 186 HOH HOH . BB 9 HOH D 7 1007 110 HOH HOH . BB 9 HOH D 8 1008 112 HOH HOH . BB 9 HOH D 9 1009 209 HOH HOH . BB 9 HOH D 10 1010 100 HOH HOH . BB 9 HOH D 11 1011 78 HOH HOH . BB 9 HOH D 12 1012 173 HOH HOH . BB 9 HOH D 13 1013 98 HOH HOH . BB 9 HOH D 14 1014 170 HOH HOH . BB 9 HOH D 15 1015 73 HOH HOH . BB 9 HOH D 16 1016 133 HOH HOH . BB 9 HOH D 17 1017 215 HOH HOH . BB 9 HOH D 18 1018 105 HOH HOH . BB 9 HOH D 19 1019 165 HOH HOH . BB 9 HOH D 20 1020 134 HOH HOH . BB 9 HOH D 21 1021 180 HOH HOH . BB 9 HOH D 22 1022 188 HOH HOH . BB 9 HOH D 23 1023 164 HOH HOH . BB 9 HOH D 24 1024 125 HOH HOH . BB 9 HOH D 25 1025 189 HOH HOH . BB 9 HOH D 26 1026 182 HOH HOH . BB 9 HOH D 27 1027 206 HOH HOH . BB 9 HOH D 28 1028 190 HOH HOH . BB 9 HOH D 29 1029 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . XA 8 59.286 -20.95 94.961 1 51.69 ? C1 GOL 908 D 1 HETATM 2 O O1 GOL . . . XA 8 59.674 -22.139 95.575 1 52.22 ? O1 GOL 908 D 1 HETATM 3 C C2 GOL . . . XA 8 58.792 -21.317 93.542 1 55.18 ? C2 GOL 908 D 1 HETATM 4 O O2 GOL . . . XA 8 57.805 -22.291 93.573 1 54.17 ? O2 GOL 908 D 1 HETATM 5 C C3 GOL . . . XA 8 58.279 -19.986 92.944 1 52.44 ? C3 GOL 908 D 1 HETATM 6 O O3 GOL . . . XA 8 59.304 -19.054 93.095 1 57.2 ? O3 GOL 908 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #