data_8BSZ # _model_server_result.job_id w5EVciWUwadsnVONSfNgFA _model_server_result.datetime_utc '2024-11-13 05:30:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bsz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 8BSZ # _exptl.entry_id 8BSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BSZ _cell.length_a 59.672 _cell.length_b 71.414 _cell.length_c 78.078 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 8BSZ _atom_sites.fract_transf_matrix[1][1] 0.016758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 501 NAG NAG . C 3 SO4 A 1 502 505 SO4 SO4 . D 3 SO4 A 1 503 508 SO4 SO4 . E 3 SO4 A 1 504 510 SO4 SO4 . F 4 DMS A 1 505 511 DMS DMS . G 5 EDO A 1 506 517 EDO EDO . H 5 EDO A 1 507 521 EDO EDO . I 5 EDO A 1 508 901 EDO EDO . J 5 EDO A 1 509 1001 EDO EDO . K 5 EDO A 1 510 1101 EDO EDO . L 5 EDO A 1 511 1601 EDO EDO . M 6 RGU A 1 512 1701 RGU XXX . N 3 SO4 A 1 513 1 SO4 SO4 . O 7 HOH A 1 601 622 HOH HOH . O 7 HOH A 2 602 618 HOH HOH . O 7 HOH A 3 603 634 HOH HOH . O 7 HOH A 4 604 640 HOH HOH . O 7 HOH A 5 605 602 HOH HOH . O 7 HOH A 6 606 709 HOH HOH . O 7 HOH A 7 607 714 HOH HOH . O 7 HOH A 8 608 690 HOH HOH . O 7 HOH A 9 609 636 HOH HOH . O 7 HOH A 10 610 637 HOH HOH . O 7 HOH A 11 611 683 HOH HOH . O 7 HOH A 12 612 606 HOH HOH . O 7 HOH A 13 613 620 HOH HOH . O 7 HOH A 14 614 653 HOH HOH . O 7 HOH A 15 615 674 HOH HOH . O 7 HOH A 16 616 642 HOH HOH . O 7 HOH A 17 617 607 HOH HOH . O 7 HOH A 18 618 649 HOH HOH . O 7 HOH A 19 619 654 HOH HOH . O 7 HOH A 20 620 650 HOH HOH . O 7 HOH A 21 621 710 HOH HOH . O 7 HOH A 22 622 608 HOH HOH . O 7 HOH A 23 623 718 HOH HOH . O 7 HOH A 24 624 652 HOH HOH . O 7 HOH A 25 625 657 HOH HOH . O 7 HOH A 26 626 631 HOH HOH . O 7 HOH A 27 627 670 HOH HOH . O 7 HOH A 28 628 691 HOH HOH . O 7 HOH A 29 629 643 HOH HOH . O 7 HOH A 30 630 689 HOH HOH . O 7 HOH A 31 631 699 HOH HOH . O 7 HOH A 32 632 616 HOH HOH . O 7 HOH A 33 633 648 HOH HOH . O 7 HOH A 34 634 700 HOH HOH . O 7 HOH A 35 635 647 HOH HOH . O 7 HOH A 36 636 669 HOH HOH . O 7 HOH A 37 637 666 HOH HOH . O 7 HOH A 38 638 676 HOH HOH . O 7 HOH A 39 639 677 HOH HOH . O 7 HOH A 40 640 716 HOH HOH . O 7 HOH A 41 641 626 HOH HOH . O 7 HOH A 42 642 632 HOH HOH . O 7 HOH A 43 643 665 HOH HOH . O 7 HOH A 44 644 629 HOH HOH . O 7 HOH A 45 645 703 HOH HOH . O 7 HOH A 46 646 698 HOH HOH . O 7 HOH A 47 647 635 HOH HOH . O 7 HOH A 48 648 1 HOH HOH . O 7 HOH A 49 649 651 HOH HOH . O 7 HOH A 50 650 655 HOH HOH . O 7 HOH A 51 651 641 HOH HOH . O 7 HOH A 52 652 644 HOH HOH . O 7 HOH A 53 653 697 HOH HOH . O 7 HOH A 54 654 638 HOH HOH . O 7 HOH A 55 655 659 HOH HOH . O 7 HOH A 56 656 680 HOH HOH . O 7 HOH A 57 657 693 HOH HOH . O 7 HOH A 58 658 658 HOH HOH . O 7 HOH A 59 659 720 HOH HOH . O 7 HOH A 60 660 701 HOH HOH . O 7 HOH A 61 661 744 HOH HOH . O 7 HOH A 62 662 681 HOH HOH . O 7 HOH A 63 663 694 HOH HOH . O 7 HOH A 64 664 663 HOH HOH . O 7 HOH A 65 665 673 HOH HOH . O 7 HOH A 66 666 721 HOH HOH . O 7 HOH A 67 667 755 HOH HOH . O 7 HOH A 68 668 749 HOH HOH . O 7 HOH A 69 669 675 HOH HOH . O 7 HOH A 70 670 695 HOH HOH . O 7 HOH A 71 671 727 HOH HOH . O 7 HOH A 72 672 687 HOH HOH . O 7 HOH A 73 673 633 HOH HOH . O 7 HOH A 74 674 719 HOH HOH . O 7 HOH A 75 675 731 HOH HOH . O 7 HOH A 76 676 715 HOH HOH . O 7 HOH A 77 677 696 HOH HOH . O 7 HOH A 78 678 737 HOH HOH . O 7 HOH A 79 679 621 HOH HOH . O 7 HOH A 80 680 734 HOH HOH . O 7 HOH A 81 681 688 HOH HOH . O 7 HOH A 82 682 725 HOH HOH . O 7 HOH A 83 683 730 HOH HOH . O 7 HOH A 84 684 732 HOH HOH . O 7 HOH A 85 685 722 HOH HOH . O 7 HOH A 86 686 723 HOH HOH . O 7 HOH A 87 687 745 HOH HOH . O 7 HOH A 88 688 724 HOH HOH . O 7 HOH A 89 689 736 HOH HOH . O 7 HOH A 90 690 735 HOH HOH . O 7 HOH A 91 691 678 HOH HOH . O 7 HOH A 92 692 733 HOH HOH . O 7 HOH A 93 693 756 HOH HOH . O 7 HOH A 94 694 753 HOH HOH . O 7 HOH A 95 695 603 HOH HOH . O 7 HOH A 96 696 772 HOH HOH . O 7 HOH A 97 697 773 HOH HOH . O 7 HOH A 98 698 783 HOH HOH . O 7 HOH A 99 699 782 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 5 16.955 78.412 101.205 1 38.75 ? C1 EDO 508 A 1 HETATM 2 O O1 EDO . . . I 5 16.886 78.145 99.794 1 42.87 ? O1 EDO 508 A 1 HETATM 3 C C2 EDO . . . I 5 18.391 78.275 101.711 1 39.39 ? C2 EDO 508 A 1 HETATM 4 O O2 EDO . . . I 5 19.066 79.543 101.672 1 38.62 ? O2 EDO 508 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 4 #