data_8BTO
#
_model_server_result.job_id            FHNPcjvtYm8veYFlck41FA 
_model_server_result.datetime_utc      '2024-11-14 06:53:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":500}' 
#
_entry.id    8BTO 
#
_exptl.entry_id    8BTO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              541.3 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BTO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
? 2 EA N N 
? 2 GA N N 
? 2 IA N N 
#
_chem_comp.formula           'C15 H21 N5 O13 P2' 
_chem_comp.formula_weight    541.3 
_chem_comp.id                OJC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C1 OJC sing 310 n n 
C1 N OJC doub 311 n y 
C1 C2 OJC sing 312 n y 
N C OJC sing 313 n y 
C2 N3 OJC sing 314 n y 
C2 C3 OJC doub 315 n y 
C N1 OJC doub 316 n y 
N3 C4 OJC doub 317 n y 
C3 N1 OJC sing 318 n y 
C3 N2 OJC sing 319 n y 
C4 N2 OJC sing 320 n y 
N2 C5 OJC sing 321 n n 
O12 C6 OJC sing 322 n n 
C5 C6 OJC sing 323 n n 
C5 O OJC sing 324 n n 
C6 C7 OJC sing 325 n n 
O C8 OJC sing 326 n n 
O6 P1 OJC sing 327 n n 
C7 O9 OJC sing 328 n n 
C7 C8 OJC sing 329 n n 
O9 C14 OJC sing 330 n n 
C8 C9 OJC sing 331 n n 
O4 P1 OJC sing 332 n n 
O4 P OJC sing 333 n n 
O1 C9 OJC sing 334 n n 
O1 P OJC sing 335 n n 
P1 O7 OJC sing 336 n n 
P1 O5 OJC doub 337 n n 
C10 O7 OJC sing 338 n n 
C10 C11 OJC sing 339 n n 
C12 C13 OJC sing 340 n n 
C12 O11 OJC sing 341 n n 
C12 C11 OJC sing 342 n n 
O3 P OJC sing 343 n n 
C13 C14 OJC sing 344 n n 
C13 O10 OJC sing 345 n n 
C14 O8 OJC sing 346 n n 
P O2 OJC doub 347 n n 
C11 O8 OJC sing 348 n n 
C H8 OJC sing 349 n n 
C10 H14 OJC sing 350 n n 
C10 H15 OJC sing 351 n n 
C11 H4 OJC sing 352 n n 
C12 H5 OJC sing 353 n n 
C13 H6 OJC sing 354 n n 
C14 H7 OJC sing 355 n n 
C4 H9 OJC sing 356 n n 
C5 H OJC sing 357 n n 
C6 H1 OJC sing 358 n n 
C7 H2 OJC sing 359 n n 
C8 H3 OJC sing 360 n n 
C9 H10 OJC sing 361 n n 
C9 H11 OJC sing 362 n n 
N4 H20 OJC sing 363 n n 
N4 H19 OJC sing 364 n n 
O10 H16 OJC sing 365 n n 
O11 H17 OJC sing 366 n n 
O12 H18 OJC sing 367 n n 
O3 H12 OJC sing 368 n n 
O6 H13 OJC sing 369 n n 
#
_atom_sites.entry_id                     8BTO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 OJC A 1 500 500 OJC OJC . 
N 3 NAD A 1 501 501 NAD NAD . 
O 2 OJC B 1 500 500 OJC OJC . 
P 3 NAD B 1 501 501 NAD NAD . 
Q 2 OJC C 1 500 500 OJC OJC . 
R 3 NAD C 1 501 501 NAD NAD . 
S 2 OJC D 1 500 500 OJC OJC . 
T 3 NAD D 1 501 501 NAD NAD . 
U 2 OJC E 1 500 500 OJC OJC . 
V 3 NAD E 1 501 501 NAD NAD . 
W 2 OJC F 1 500 500 OJC OJC . 
X 3 NAD F 1 501 501 NAD NAD . 
Y 2 OJC G 1 500 500 OJC OJC . 
Z 3 NAD G 1 501 501 NAD NAD . 
AA 2 OJC H 1 500 500 OJC OJC . 
BA 3 NAD H 1 501 501 NAD NAD . 
CA 2 OJC I 1 500 500 OJC OJC . 
DA 3 NAD I 1 501 501 NAD NAD . 
EA 2 OJC J 1 500 500 OJC OJC . 
FA 3 NAD J 1 501 501 NAD NAD . 
GA 2 OJC K 1 500 500 OJC OJC . 
HA 3 NAD K 1 501 501 NAD NAD . 
IA 2 OJC L 1 500 500 OJC OJC . 
JA 3 NAD L 1 501 501 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N OJC . . . O 2 235.889 206.401 153.824 1 85.94 ? N OJC 500 B 1 
HETATM 2 C C OJC . . . O 2 234.567 206.414 154.08 1 85.94 ? C OJC 500 B 1 
HETATM 3 O O OJC . . . O 2 231.756 209.929 151.97 1 85.94 ? O OJC 500 B 1 
HETATM 4 C C1 OJC . . . O 2 236.476 207.514 153.326 1 85.94 ? C1 OJC 500 B 1 
HETATM 5 C C2 OJC . . . O 2 235.655 208.625 153.102 1 85.94 ? C2 OJC 500 B 1 
HETATM 6 C C3 OJC . . . O 2 234.32 208.5 153.401 1 85.94 ? C3 OJC 500 B 1 
HETATM 7 C C10 OJC . . . O 2 228.99 214.562 154.469 1 85.94 ? C10 OJC 500 B 1 
HETATM 8 C C11 OJC . . . O 2 227.856 213.582 154.289 1 85.94 ? C11 OJC 500 B 1 
HETATM 9 C C12 OJC . . . O 2 227.637 212.584 155.429 1 85.94 ? C12 OJC 500 B 1 
HETATM 10 C C13 OJC . . . O 2 227.396 211.274 154.697 1 85.94 ? C13 OJC 500 B 1 
HETATM 11 C C14 OJC . . . O 2 228.329 211.44 153.523 1 85.94 ? C14 OJC 500 B 1 
HETATM 12 C C4 OJC . . . O 2 234.775 210.499 152.643 1 85.94 ? C4 OJC 500 B 1 
HETATM 13 C C5 OJC . . . O 2 232.351 210.067 153.232 1 85.94 ? C5 OJC 500 B 1 
HETATM 14 C C6 OJC . . . O 2 232.122 211.516 153.609 1 85.94 ? C6 OJC 500 B 1 
HETATM 15 C C7 OJC . . . O 2 230.689 211.699 153.122 1 85.94 ? C7 OJC 500 B 1 
HETATM 16 C C8 OJC . . . O 2 230.658 210.866 151.843 1 85.94 ? C8 OJC 500 B 1 
HETATM 17 C C9 OJC . . . O 2 230.783 211.651 150.559 1 85.94 ? C9 OJC 500 B 1 
HETATM 18 N N1 OJC . . . O 2 233.706 207.415 153.892 1 85.94 ? N1 OJC 500 B 1 
HETATM 19 N N2 OJC . . . O 2 233.751 209.714 153.103 1 85.94 ? N2 OJC 500 B 1 
HETATM 20 N N3 OJC . . . O 2 235.927 209.892 152.617 1 85.94 ? N3 OJC 500 B 1 
HETATM 21 N N4 OJC . . . O 2 237.784 207.492 153.078 1 85.94 ? N4 OJC 500 B 1 
HETATM 22 O O1 OJC . . . O 2 231.945 212.484 150.615 1 85.94 ? O1 OJC 500 B 1 
HETATM 23 O O10 OJC . . . O 2 226.056 211.099 154.291 1 85.94 ? O10 OJC 500 B 1 
HETATM 24 O O11 OJC . . . O 2 226.581 212.967 156.295 1 85.94 ? O11 OJC 500 B 1 
HETATM 25 O O12 OJC . . . O 2 232.293 211.79 154.98 1 85.94 ? O12 OJC 500 B 1 
HETATM 26 O O2 OJC . . . O 2 230.986 214.44 149.402 1 85.94 ? O2 OJC 500 B 1 
HETATM 27 O O3 OJC . . . O 2 233.099 214.678 150.833 1 85.94 ? O3 OJC 500 B 1 
HETATM 28 O O4 OJC . . . O 2 230.856 214.39 151.87 1 85.94 ? O4 OJC 500 B 1 
HETATM 29 O O5 OJC . . . O 2 230.593 216.846 151.916 1 85.94 ? O5 OJC 500 B 1 
HETATM 30 O O6 OJC . . . O 2 231.492 215.6 153.962 1 85.94 ? O6 OJC 500 B 1 
HETATM 31 O O7 OJC . . . O 2 229.097 215.411 153.32 1 85.94 ? O7 OJC 500 B 1 
HETATM 32 O O8 OJC . . . O 2 228.099 212.774 153.123 1 85.94 ? O8 OJC 500 B 1 
HETATM 33 O O9 OJC . . . O 2 229.655 211.256 153.982 1 85.94 ? O9 OJC 500 B 1 
HETATM 34 P P OJC . . . O 2 231.77 214.073 150.602 1 85.94 ? P OJC 500 B 1 
HETATM 35 P P1 OJC . . . O 2 230.586 215.66 152.797 1 85.94 ? P1 OJC 500 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#