data_8BTO # _model_server_result.job_id jSEJ1mmBA3xN9KbB5OzxJA _model_server_result.datetime_utc '2024-11-14 07:00:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8bto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":500}' # _entry.id 8BTO # _exptl.entry_id 8BTO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 541.3 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8BTO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8BTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N ? 2 Y N N ? 2 AA N N ? 2 CA N N ? 2 EA N N ? 2 GA N N ? 2 IA N N # _chem_comp.formula 'C15 H21 N5 O13 P2' _chem_comp.formula_weight 541.3 _chem_comp.id OJC _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C1 OJC sing 310 n n C1 N OJC doub 311 n y C1 C2 OJC sing 312 n y N C OJC sing 313 n y C2 N3 OJC sing 314 n y C2 C3 OJC doub 315 n y C N1 OJC doub 316 n y N3 C4 OJC doub 317 n y C3 N1 OJC sing 318 n y C3 N2 OJC sing 319 n y C4 N2 OJC sing 320 n y N2 C5 OJC sing 321 n n O12 C6 OJC sing 322 n n C5 C6 OJC sing 323 n n C5 O OJC sing 324 n n C6 C7 OJC sing 325 n n O C8 OJC sing 326 n n O6 P1 OJC sing 327 n n C7 O9 OJC sing 328 n n C7 C8 OJC sing 329 n n O9 C14 OJC sing 330 n n C8 C9 OJC sing 331 n n O4 P1 OJC sing 332 n n O4 P OJC sing 333 n n O1 C9 OJC sing 334 n n O1 P OJC sing 335 n n P1 O7 OJC sing 336 n n P1 O5 OJC doub 337 n n C10 O7 OJC sing 338 n n C10 C11 OJC sing 339 n n C12 C13 OJC sing 340 n n C12 O11 OJC sing 341 n n C12 C11 OJC sing 342 n n O3 P OJC sing 343 n n C13 C14 OJC sing 344 n n C13 O10 OJC sing 345 n n C14 O8 OJC sing 346 n n P O2 OJC doub 347 n n C11 O8 OJC sing 348 n n C H8 OJC sing 349 n n C10 H14 OJC sing 350 n n C10 H15 OJC sing 351 n n C11 H4 OJC sing 352 n n C12 H5 OJC sing 353 n n C13 H6 OJC sing 354 n n C14 H7 OJC sing 355 n n C4 H9 OJC sing 356 n n C5 H OJC sing 357 n n C6 H1 OJC sing 358 n n C7 H2 OJC sing 359 n n C8 H3 OJC sing 360 n n C9 H10 OJC sing 361 n n C9 H11 OJC sing 362 n n N4 H20 OJC sing 363 n n N4 H19 OJC sing 364 n n O10 H16 OJC sing 365 n n O11 H17 OJC sing 366 n n O12 H18 OJC sing 367 n n O3 H12 OJC sing 368 n n O6 H13 OJC sing 369 n n # _atom_sites.entry_id 8BTO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 OJC A 1 500 500 OJC OJC . N 3 NAD A 1 501 501 NAD NAD . O 2 OJC B 1 500 500 OJC OJC . P 3 NAD B 1 501 501 NAD NAD . Q 2 OJC C 1 500 500 OJC OJC . R 3 NAD C 1 501 501 NAD NAD . S 2 OJC D 1 500 500 OJC OJC . T 3 NAD D 1 501 501 NAD NAD . U 2 OJC E 1 500 500 OJC OJC . V 3 NAD E 1 501 501 NAD NAD . W 2 OJC F 1 500 500 OJC OJC . X 3 NAD F 1 501 501 NAD NAD . Y 2 OJC G 1 500 500 OJC OJC . Z 3 NAD G 1 501 501 NAD NAD . AA 2 OJC H 1 500 500 OJC OJC . BA 3 NAD H 1 501 501 NAD NAD . CA 2 OJC I 1 500 500 OJC OJC . DA 3 NAD I 1 501 501 NAD NAD . EA 2 OJC J 1 500 500 OJC OJC . FA 3 NAD J 1 501 501 NAD NAD . GA 2 OJC K 1 500 500 OJC OJC . HA 3 NAD K 1 501 501 NAD NAD . IA 2 OJC L 1 500 500 OJC OJC . JA 3 NAD L 1 501 501 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N OJC . . . Y 2 161.993 110.343 111.949 1 90.33 ? N OJC 500 G 1 HETATM 2 C C OJC . . . Y 2 162.833 111.362 112.206 1 90.33 ? C OJC 500 G 1 HETATM 3 O O OJC . . . Y 2 167.334 111.339 110.097 1 90.33 ? O OJC 500 G 1 HETATM 4 C C1 OJC . . . Y 2 162.489 109.187 111.452 1 90.33 ? C1 OJC 500 G 1 HETATM 5 C C2 OJC . . . Y 2 163.868 109.127 111.228 1 90.33 ? C2 OJC 500 G 1 HETATM 6 C C3 OJC . . . Y 2 164.611 110.244 111.527 1 90.33 ? C3 OJC 500 G 1 HETATM 7 C C10 OJC . . . Y 2 172.676 110.576 112.596 1 90.33 ? C10 OJC 500 G 1 HETATM 8 C C11 OJC . . . Y 2 172.627 112.074 112.417 1 90.33 ? C11 OJC 500 G 1 HETATM 9 C C12 OJC . . . Y 2 171.988 112.872 113.557 1 90.33 ? C12 OJC 500 G 1 HETATM 10 C C13 OJC . . . Y 2 171.122 113.883 112.824 1 90.33 ? C13 OJC 500 G 1 HETATM 11 C C14 OJC . . . Y 2 170.664 113.054 111.65 1 90.33 ? C14 OJC 500 G 1 HETATM 12 C C4 OJC . . . Y 2 165.88 108.633 110.769 1 90.33 ? C4 OJC 500 G 1 HETATM 13 C C5 OJC . . . Y 2 167.067 110.79 111.359 1 90.33 ? C5 OJC 500 G 1 HETATM 14 C C6 OJC . . . Y 2 168.339 110.056 111.735 1 90.33 ? C6 OJC 500 G 1 HETATM 15 C C7 OJC . . . Y 2 169.382 111.056 111.249 1 90.33 ? C7 OJC 500 G 1 HETATM 16 C C8 OJC . . . Y 2 168.753 111.604 109.97 1 90.33 ? C8 OJC 500 G 1 HETATM 17 C C9 OJC . . . Y 2 169.286 111.013 108.686 1 90.33 ? C9 OJC 500 G 1 HETATM 18 N N1 OJC . . . Y 2 164.153 111.403 112.018 1 90.33 ? N1 OJC 500 G 1 HETATM 19 N N2 OJC . . . Y 2 165.913 109.923 111.23 1 90.33 ? N2 OJC 500 G 1 HETATM 20 N N3 OJC . . . Y 2 164.683 108.118 110.742 1 90.33 ? N3 OJC 500 G 1 HETATM 21 N N4 OJC . . . Y 2 161.649 108.183 111.203 1 90.33 ? N4 OJC 500 G 1 HETATM 22 O O1 OJC . . . Y 2 169.202 109.586 108.741 1 90.33 ? O1 OJC 500 G 1 HETATM 23 O O10 OJC . . . Y 2 171.828 115.035 112.419 1 90.33 ? O10 OJC 500 G 1 HETATM 24 O O11 OJC . . . Y 2 172.95 113.452 114.423 1 90.33 ? O11 OJC 500 G 1 HETATM 25 O O12 OJC . . . Y 2 168.444 109.751 113.106 1 90.33 ? O12 OJC 500 G 1 HETATM 26 O O2 OJC . . . Y 2 171.327 109.102 107.529 1 90.33 ? O2 OJC 500 G 1 HETATM 27 O O3 OJC . . . Y 2 170.183 107.309 108.959 1 90.33 ? O3 OJC 500 G 1 HETATM 28 O O4 OJC . . . Y 2 171.369 109.233 109.997 1 90.33 ? O4 OJC 500 G 1 HETATM 29 O O5 OJC . . . Y 2 173.445 107.894 110.043 1 90.33 ? O5 OJC 500 G 1 HETATM 30 O O6 OJC . . . Y 2 171.91 107.978 112.088 1 90.33 ? O6 OJC 500 G 1 HETATM 31 O O7 OJC . . . Y 2 173.269 109.96 111.448 1 90.33 ? O7 OJC 500 G 1 HETATM 32 O O8 OJC . . . Y 2 171.846 112.394 111.251 1 90.33 ? O8 OJC 500 G 1 HETATM 33 O O9 OJC . . . Y 2 169.687 112.138 112.109 1 90.33 ? O9 OJC 500 G 1 HETATM 34 P P OJC . . . Y 2 170.549 108.723 108.729 1 90.33 ? P OJC 500 G 1 HETATM 35 P P1 OJC . . . Y 2 172.527 108.645 110.924 1 90.33 ? P1 OJC 500 G 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #