data_8BTO
#
_model_server_result.job_id            EL-SRPNu23N6YhJOWC8FNQ 
_model_server_result.datetime_utc      '2024-11-14 06:57:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8bto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":501}' 
#
_entry.id    8BTO 
#
_exptl.entry_id    8BTO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BTO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
? 3 FA N N 
? 3 HA N N 
? 3 JA N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     8BTO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 OJC A 1 500 500 OJC OJC . 
N 3 NAD A 1 501 501 NAD NAD . 
O 2 OJC B 1 500 500 OJC OJC . 
P 3 NAD B 1 501 501 NAD NAD . 
Q 2 OJC C 1 500 500 OJC OJC . 
R 3 NAD C 1 501 501 NAD NAD . 
S 2 OJC D 1 500 500 OJC OJC . 
T 3 NAD D 1 501 501 NAD NAD . 
U 2 OJC E 1 500 500 OJC OJC . 
V 3 NAD E 1 501 501 NAD NAD . 
W 2 OJC F 1 500 500 OJC OJC . 
X 3 NAD F 1 501 501 NAD NAD . 
Y 2 OJC G 1 500 500 OJC OJC . 
Z 3 NAD G 1 501 501 NAD NAD . 
AA 2 OJC H 1 500 500 OJC OJC . 
BA 3 NAD H 1 501 501 NAD NAD . 
CA 2 OJC I 1 500 500 OJC OJC . 
DA 3 NAD I 1 501 501 NAD NAD . 
EA 2 OJC J 1 500 500 OJC OJC . 
FA 3 NAD J 1 501 501 NAD NAD . 
GA 2 OJC K 1 500 500 OJC OJC . 
HA 3 NAD K 1 501 501 NAD NAD . 
IA 2 OJC L 1 500 500 OJC OJC . 
JA 3 NAD L 1 501 501 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . HA 3 152.502 158.63 192.027 1 46.92 ? PA NAD 501 K 1 
HETATM 2 O O1A NAD . . . HA 3 151.779 157.927 190.904 1 46.92 ? O1A NAD 501 K 1 
HETATM 3 O O2A NAD . . . HA 3 153.575 157.896 192.794 1 46.92 ? O2A NAD 501 K 1 
HETATM 4 O O5B NAD . . . HA 3 151.388 159.139 193.071 1 46.92 ? O5B NAD 501 K 1 
HETATM 5 C C5B NAD . . . HA 3 150.929 158.259 194.094 1 46.92 ? C5B NAD 501 K 1 
HETATM 6 C C4B NAD . . . HA 3 150.137 159.05 195.123 1 46.92 ? C4B NAD 501 K 1 
HETATM 7 O O4B NAD . . . HA 3 148.957 159.564 194.508 1 46.92 ? O4B NAD 501 K 1 
HETATM 8 C C3B NAD . . . HA 3 149.706 158.185 196.295 1 46.92 ? C3B NAD 501 K 1 
HETATM 9 O O3B NAD . . . HA 3 150.027 158.834 197.529 1 46.92 ? O3B NAD 501 K 1 
HETATM 10 C C2B NAD . . . HA 3 148.206 158.033 196.156 1 46.92 ? C2B NAD 501 K 1 
HETATM 11 O O2B NAD . . . HA 3 147.566 158.258 197.415 1 46.92 ? O2B NAD 501 K 1 
HETATM 12 C C1B NAD . . . HA 3 147.778 159.091 195.155 1 46.92 ? C1B NAD 501 K 1 
HETATM 13 N N9A NAD . . . HA 3 146.865 158.516 194.138 1 46.92 ? N9A NAD 501 K 1 
HETATM 14 C C8A NAD . . . HA 3 147.141 157.468 193.339 1 46.92 ? C8A NAD 501 K 1 
HETATM 15 N N7A NAD . . . HA 3 146.099 157.193 192.515 1 46.92 ? N7A NAD 501 K 1 
HETATM 16 C C5A NAD . . . HA 3 145.128 158.084 192.785 1 46.92 ? C5A NAD 501 K 1 
HETATM 17 C C6A NAD . . . HA 3 143.765 158.357 192.279 1 46.92 ? C6A NAD 501 K 1 
HETATM 18 N N6A NAD . . . HA 3 143.224 157.601 191.295 1 46.92 ? N6A NAD 501 K 1 
HETATM 19 N N1A NAD . . . HA 3 143.083 159.384 192.833 1 46.92 ? N1A NAD 501 K 1 
HETATM 20 C C2A NAD . . . HA 3 143.613 160.142 193.811 1 46.92 ? C2A NAD 501 K 1 
HETATM 21 N N3A NAD . . . HA 3 144.845 159.95 194.318 1 46.92 ? N3A NAD 501 K 1 
HETATM 22 C C4A NAD . . . HA 3 145.638 158.955 193.855 1 46.92 ? C4A NAD 501 K 1 
HETATM 23 O O3 NAD . . . HA 3 153.13 159.986 191.425 1 46.92 ? O3 NAD 501 K 1 
HETATM 24 P PN NAD . . . HA 3 154.032 161.013 192.279 1 46.92 ? PN NAD 501 K 1 
HETATM 25 O O1N NAD . . . HA 3 154.174 162.289 191.485 1 46.92 ? O1N NAD 501 K 1 
HETATM 26 O O2N NAD . . . HA 3 153.489 161.073 193.681 1 46.92 ? O2N NAD 501 K 1 
HETATM 27 O O5D NAD . . . HA 3 155.473 160.295 192.321 1 46.92 ? O5D NAD 501 K 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    147 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#