data_8BTP
#
_model_server_result.job_id            ZwY1A_XqK6PHfGx0qLnR3w 
_model_server_result.datetime_utc      '2025-03-30 21:26:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8btp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":500}' 
#
_entry.id    8BTP 
#
_exptl.entry_id    8BTP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              565.322 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S,3S,4R,5R,7R,15R,16S,17R)-5-imidazo[2,1-f]purin-3-yl-10,12-bis(oxidanyl)-10,12-bis(oxidanylidene)-2,6,9,11,13,18-hexaoxa-10$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{3,7}]octadecane-4,16,17-triol 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BTP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
? 2 EA N N 
? 2 GA N N 
? 2 IA N N 
#
_chem_comp.formula           'C17 H21 N5 O13 P2' 
_chem_comp.formula_weight    565.322 
_chem_comp.id                RK3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S,3S,4R,5R,7R,15R,16S,17R)-5-imidazo[2,1-f]purin-3-yl-10,12-bis(oxidanyl)-10,12-bis(oxidanylidene)-2,6,9,11,13,18-hexaoxa-10$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{3,7}]octadecane-4,16,17-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "1''-3'gc(etheno)ADPR" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O37 C36 RK3 sing 353 n n 
C36 C34 RK3 sing 354 n n 
C36 C06 RK3 sing 355 n n 
O12 C11 RK3 sing 356 n n 
C34 O35 RK3 sing 357 n n 
C34 C08 RK3 sing 358 n n 
C05 C06 RK3 sing 359 n n 
C05 O04 RK3 sing 360 n n 
O01 P02 RK3 doub 361 n n 
C06 O07 RK3 sing 362 n n 
O09 C08 RK3 sing 363 n n 
O09 C10 RK3 sing 364 n n 
C15 N16 RK3 doub 365 n y 
C15 N14 RK3 sing 366 n y 
C08 O07 RK3 sing 367 n n 
C11 C10 RK3 sing 368 n n 
C11 C13 RK3 sing 369 n n 
O04 P02 RK3 sing 370 n n 
N16 C17 RK3 sing 371 n y 
P02 O03 RK3 sing 372 n n 
P02 O33 RK3 sing 373 n n 
C10 C27 RK3 sing 374 n n 
C13 N14 RK3 sing 375 n n 
C13 O26 RK3 sing 376 n n 
N14 C18 RK3 sing 377 n y 
C17 C18 RK3 doub 378 n y 
C17 C25 RK3 sing 379 n y 
O33 P30 RK3 sing 380 n n 
C18 N19 RK3 sing 381 n y 
C27 O26 RK3 sing 382 n n 
C27 C28 RK3 sing 383 n n 
N24 C25 RK3 doub 384 n y 
N24 C23 RK3 sing 385 n y 
C25 N21 RK3 sing 386 n y 
N19 C20 RK3 doub 387 n y 
C23 C22 RK3 doub 388 n y 
P30 O32 RK3 doub 389 n n 
P30 O29 RK3 sing 390 n n 
P30 O31 RK3 sing 391 n n 
N21 C20 RK3 sing 392 n y 
N21 C22 RK3 sing 393 n y 
C28 O29 RK3 sing 394 n n 
C28 H1 RK3 sing 395 n n 
C28 H2 RK3 sing 396 n n 
C36 H3 RK3 sing 397 n n 
O37 H4 RK3 sing 398 n n 
C05 H5 RK3 sing 399 n n 
C05 H6 RK3 sing 400 n n 
C06 H7 RK3 sing 401 n n 
C08 H8 RK3 sing 402 n n 
C10 H9 RK3 sing 403 n n 
C11 H10 RK3 sing 404 n n 
C13 H11 RK3 sing 405 n n 
C15 H12 RK3 sing 406 n n 
C20 H13 RK3 sing 407 n n 
C22 H14 RK3 sing 408 n n 
C23 H15 RK3 sing 409 n n 
C27 H16 RK3 sing 410 n n 
C34 H17 RK3 sing 411 n n 
O03 H18 RK3 sing 412 n n 
O12 H19 RK3 sing 413 n n 
O31 H20 RK3 sing 414 n n 
O35 H21 RK3 sing 415 n n 
#
_atom_sites.entry_id                     8BTP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 RK3 A 1 500 500 RK3 LTE . 
N 3 ENA A 1 501 501 ENA ENA . 
O 2 RK3 B 1 500 500 RK3 LTE . 
P 3 ENA B 1 501 501 ENA ENA . 
Q 2 RK3 C 1 500 500 RK3 LTE . 
R 3 ENA C 1 501 501 ENA ENA . 
S 2 RK3 D 1 500 500 RK3 LTE . 
T 3 ENA D 1 501 501 ENA ENA . 
U 2 RK3 E 1 500 500 RK3 LTE . 
V 3 ENA E 1 501 501 ENA ENA . 
W 2 RK3 F 1 500 500 RK3 LTE . 
X 3 ENA F 1 501 501 ENA ENA . 
Y 2 RK3 G 1 500 500 RK3 LTE . 
Z 3 ENA G 1 501 501 ENA ENA . 
AA 2 RK3 H 1 500 500 RK3 LTE . 
BA 3 ENA H 1 501 501 ENA ENA . 
CA 2 RK3 I 1 500 500 RK3 LTE . 
DA 3 ENA I 1 501 501 ENA ENA . 
EA 2 RK3 J 1 500 500 RK3 LTE . 
FA 3 ENA J 1 501 501 ENA ENA . 
GA 2 RK3 K 1 500 500 RK3 LTE . 
HA 3 ENA K 1 501 501 ENA ENA . 
IA 2 RK3 L 1 500 500 RK3 LTE . 
JA 3 ENA L 1 501 501 ENA ENA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C28 RK3 . . . Q 2 121.202 140.089 150.638 1 49.61 ? C28 RK3 500 C 1 
HETATM 2 C C36 RK3 . . . Q 2 124.125 139.222 155.623 1 49.61 ? C36 RK3 500 C 1 
HETATM 3 O O37 RK3 . . . Q 2 125.373 138.932 156.231 1 49.61 ? O37 RK3 500 C 1 
HETATM 4 C C05 RK3 . . . Q 2 122.783 137.208 154.814 1 49.61 ? C05 RK3 500 C 1 
HETATM 5 C C06 RK3 . . . Q 2 123.838 138.234 154.489 1 49.61 ? C06 RK3 500 C 1 
HETATM 6 C C08 RK3 . . . Q 2 123.269 140.396 153.72 1 49.61 ? C08 RK3 500 C 1 
HETATM 7 C C10 RK3 . . . Q 2 120.915 140.247 153.195 1 49.61 ? C10 RK3 500 C 1 
HETATM 8 C C11 RK3 . . . Q 2 119.471 140.328 153.711 1 49.61 ? C11 RK3 500 C 1 
HETATM 9 C C13 RK3 . . . Q 2 118.997 141.584 153.005 1 49.61 ? C13 RK3 500 C 1 
HETATM 10 C C15 RK3 . . . Q 2 116.824 142.507 153.875 1 49.61 ? C15 RK3 500 C 1 
HETATM 11 C C17 RK3 . . . Q 2 115.394 141.682 152.495 1 49.61 ? C17 RK3 500 C 1 
HETATM 12 C C18 RK3 . . . Q 2 116.651 141.222 152.098 1 49.61 ? C18 RK3 500 C 1 
HETATM 13 C C20 RK3 . . . Q 2 115.806 140.032 150.351 1 49.61 ? C20 RK3 500 C 1 
HETATM 14 C C22 RK3 . . . Q 2 113.286 140.171 150.08 1 49.61 ? C22 RK3 500 C 1 
HETATM 15 C C23 RK3 . . . Q 2 112.333 140.832 150.801 1 49.61 ? C23 RK3 500 C 1 
HETATM 16 C C25 RK3 . . . Q 2 114.299 141.273 151.751 1 49.61 ? C25 RK3 500 C 1 
HETATM 17 C C27 RK3 . . . Q 2 120.838 140.937 151.828 1 49.61 ? C27 RK3 500 C 1 
HETATM 18 C C34 RK3 . . . Q 2 124.171 140.586 154.938 1 49.61 ? C34 RK3 500 C 1 
HETATM 19 N N14 RK3 . . . Q 2 117.553 141.757 152.988 1 49.61 ? N14 RK3 500 C 1 
HETATM 20 N N16 RK3 . . . Q 2 115.539 142.492 153.613 1 49.61 ? N16 RK3 500 C 1 
HETATM 21 N N19 RK3 . . . Q 2 116.853 140.41 151.046 1 49.61 ? N19 RK3 500 C 1 
HETATM 22 N N21 RK3 . . . Q 2 114.52 140.442 150.667 1 49.61 ? N21 RK3 500 C 1 
HETATM 23 N N24 RK3 . . . Q 2 112.946 141.507 151.824 1 49.61 ? N24 RK3 500 C 1 
HETATM 24 O O01 RK3 . . . Q 2 120.159 136.212 154.529 1 49.61 ? O01 RK3 500 C 1 
HETATM 25 O O03 RK3 . . . Q 2 120.898 134.839 152.493 1 49.61 ? O03 RK3 500 C 1 
HETATM 26 O O04 RK3 . . . Q 2 122.52 136.365 153.676 1 49.61 ? O04 RK3 500 C 1 
HETATM 27 O O07 RK3 . . . Q 2 123.38 139.021 153.37 1 49.61 ? O07 RK3 500 C 1 
HETATM 28 O O09 RK3 . . . Q 2 121.948 140.759 154.04 1 49.61 ? O09 RK3 500 C 1 
HETATM 29 O O12 RK3 . . . Q 2 119.341 140.328 155.112 1 49.61 ? O12 RK3 500 C 1 
HETATM 30 O O26 RK3 . . . Q 2 119.465 141.376 151.701 1 49.61 ? O26 RK3 500 C 1 
HETATM 31 O O29 RK3 . . . Q 2 120.303 138.959 150.532 1 49.61 ? O29 RK3 500 C 1 
HETATM 32 O O31 RK3 . . . Q 2 120.248 136.5 149.95 1 49.61 ? O31 RK3 500 C 1 
HETATM 33 O O32 RK3 . . . Q 2 122.442 137.653 150.605 1 49.61 ? O32 RK3 500 C 1 
HETATM 34 O O33 RK3 . . . Q 2 120.619 137.265 152.304 1 49.61 ? O33 RK3 500 C 1 
HETATM 35 O O35 RK3 . . . Q 2 125.497 140.972 154.648 1 49.61 ? O35 RK3 500 C 1 
HETATM 36 P P02 RK3 . . . Q 2 120.993 136.08 153.307 1 49.61 ? P02 RK3 500 C 1 
HETATM 37 P P30 RK3 . . . Q 2 120.964 137.523 150.763 1 49.61 ? P30 RK3 500 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#