data_8BTP
#
_model_server_result.job_id            jpOE4s7dvw_UMIicN803mQ 
_model_server_result.datetime_utc      '2025-03-30 18:24:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8btp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":501}' 
#
_entry.id    8BTP 
#
_exptl.entry_id    8BTP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              687.447 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ETHENO-NAD 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8BTP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8BTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
? 3 FA N N 
? 3 HA N N 
? 3 JA N N 
#
_chem_comp.formula           'C23 H27 N7 O14 P2' 
_chem_comp.formula_weight    687.447 
_chem_comp.id                ENA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ETHENO-NAD 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ENA doub 83 n y 
N1 C6 ENA sing 84 n y 
N1 C10 ENA sing 85 n y 
O1 P1 ENA doub 86 n n 
P1 O2 ENA sing 87 n n 
P1 O3 ENA sing 88 n n 
P1 O5' ENA sing 89 n n 
C2 N3 ENA sing 90 n y 
O2 P2 ENA sing 91 n n 
P2 O4 ENA sing 92 n n 
P2 O5 ENA sing 93 n n 
P2 O6 ENA doub 94 n n 
N3 C8 ENA doub 95 n y 
C4 N7 ENA doub 96 n y 
C4 N9 ENA sing 97 n y 
O4 C6' ENA sing 98 n n 
C5 C6 ENA doub 99 n y 
C5 N7 ENA sing 100 n y 
C5 C8 ENA sing 101 n y 
C6 N6 ENA sing 102 n y 
N6 C9 ENA sing 103 n y 
C8 N9 ENA sing 104 n y 
C9 C10 ENA doub 105 n y 
N9 C1' ENA sing 106 n n 
C0' C8' ENA sing 107 n n 
C0' O8' ENA sing 108 n n 
C0' C9' ENA sing 109 n n 
C1' C2' ENA sing 110 n n 
C1' O2' ENA sing 111 n n 
N11 C12 ENA doub 112 n y 
N11 C16 ENA sing 113 n y 
N11 C9' ENA sing 114 n n 
C12 C13 ENA sing 115 n y 
C13 C14 ENA doub 116 n y 
C13 C17 ENA sing 117 n n 
C14 C15 ENA sing 118 n y 
C15 C16 ENA doub 119 n y 
C17 N17 ENA sing 120 n n 
C17 O17 ENA doub 121 n n 
C2' C3' ENA sing 122 n n 
C2' O4' ENA sing 123 n n 
O2' C4' ENA sing 124 n n 
C3' O3' ENA sing 125 n n 
C3' C4' ENA sing 126 n n 
C4' C5' ENA sing 127 n n 
C5' O5' ENA sing 128 n n 
C6' C7' ENA sing 129 n n 
O6' C7' ENA sing 130 n n 
O6' C9' ENA sing 131 n n 
C7' C8' ENA sing 132 n n 
O7' C8' ENA sing 133 n n 
C2 H2 ENA sing 134 n n 
C4 H4 ENA sing 135 n n 
N6 HN6 ENA sing 136 n n 
C9 H9 ENA sing 137 n n 
C0' H0' ENA sing 138 n n 
C1' H1' ENA sing 139 n n 
C10 H10 ENA sing 140 n n 
C12 H12 ENA sing 141 n n 
C14 H14 ENA sing 142 n n 
C15 H15 ENA sing 143 n n 
C16 H16 ENA sing 144 n n 
N17 HN17 ENA sing 145 n n 
N17 HN1A ENA sing 146 n n 
C2' H2' ENA sing 147 n n 
C3' H3' ENA sing 148 n n 
O3' HO3' ENA sing 149 n n 
C4' H4' ENA sing 150 n n 
O4' HO4' ENA sing 151 n n 
C5' H5' ENA sing 152 n n 
C5' "H5'A" ENA sing 153 n n 
C6' H6' ENA sing 154 n n 
C6' "H6'A" ENA sing 155 n n 
C7' H7' ENA sing 156 n n 
O7' HO7' ENA sing 157 n n 
C8' H8' ENA sing 158 n n 
O8' HO8' ENA sing 159 n n 
C9' H9' ENA sing 160 n n 
#
_atom_sites.entry_id                     8BTP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 RK3 A 1 500 500 RK3 LTE . 
N 3 ENA A 1 501 501 ENA ENA . 
O 2 RK3 B 1 500 500 RK3 LTE . 
P 3 ENA B 1 501 501 ENA ENA . 
Q 2 RK3 C 1 500 500 RK3 LTE . 
R 3 ENA C 1 501 501 ENA ENA . 
S 2 RK3 D 1 500 500 RK3 LTE . 
T 3 ENA D 1 501 501 ENA ENA . 
U 2 RK3 E 1 500 500 RK3 LTE . 
V 3 ENA E 1 501 501 ENA ENA . 
W 2 RK3 F 1 500 500 RK3 LTE . 
X 3 ENA F 1 501 501 ENA ENA . 
Y 2 RK3 G 1 500 500 RK3 LTE . 
Z 3 ENA G 1 501 501 ENA ENA . 
AA 2 RK3 H 1 500 500 RK3 LTE . 
BA 3 ENA H 1 501 501 ENA ENA . 
CA 2 RK3 I 1 500 500 RK3 LTE . 
DA 3 ENA I 1 501 501 ENA ENA . 
EA 2 RK3 J 1 500 500 RK3 LTE . 
FA 3 ENA J 1 501 501 ENA ENA . 
GA 2 RK3 K 1 500 500 RK3 LTE . 
HA 3 ENA K 1 501 501 ENA ENA . 
IA 2 RK3 L 1 500 500 RK3 LTE . 
JA 3 ENA L 1 501 501 ENA ENA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ENA . . . DA 3 184.266 140.823 200.287 1 21.85 ? N1 ENA 501 I 1 
HETATM 2 O O1 ENA . . . DA 3 175.995 147.715 201.288 1 21.85 ? O1 ENA 501 I 1 
HETATM 3 P P1 ENA . . . DA 3 177.299 147.289 201.914 1 21.85 ? P1 ENA 501 I 1 
HETATM 4 C C2 ENA . . . DA 3 184.171 141.921 199.529 1 21.85 ? C2 ENA 501 I 1 
HETATM 5 O O2 ENA . . . DA 3 178.474 148.249 201.367 1 21.85 ? O2 ENA 501 I 1 
HETATM 6 P P2 ENA . . . DA 3 178.41 149.855 201.496 1 21.85 ? P2 ENA 501 I 1 
HETATM 7 N N3 ENA . . . DA 3 183.015 142.564 199.329 1 21.85 ? N3 ENA 501 I 1 
HETATM 8 O O3 ENA . . . DA 3 177.414 147.161 203.408 1 21.85 ? O3 ENA 501 I 1 
HETATM 9 C C4 ENA . . . DA 3 179.915 141.599 200.731 1 21.85 ? C4 ENA 501 I 1 
HETATM 10 O O4 ENA . . . DA 3 177.761 150.101 202.942 1 21.85 ? O4 ENA 501 I 1 
HETATM 11 C C5 ENA . . . DA 3 181.911 140.961 200.734 1 21.85 ? C5 ENA 501 I 1 
HETATM 12 O O5 ENA . . . DA 3 179.798 150.407 201.59 1 21.85 ? O5 ENA 501 I 1 
HETATM 13 C C6 ENA . . . DA 3 183.204 140.33 200.886 1 21.85 ? C6 ENA 501 I 1 
HETATM 14 N N6 ENA . . . DA 3 183.396 139.247 201.6 1 21.85 ? N6 ENA 501 I 1 
HETATM 15 O O6 ENA . . . DA 3 177.483 150.42 200.453 1 21.85 ? O6 ENA 501 I 1 
HETATM 16 N N7 ENA . . . DA 3 180.725 140.621 201.243 1 21.85 ? N7 ENA 501 I 1 
HETATM 17 C C8 ENA . . . DA 3 181.868 142.127 199.902 1 21.85 ? C8 ENA 501 I 1 
HETATM 18 C C9 ENA . . . DA 3 184.719 139.043 201.429 1 21.85 ? C9 ENA 501 I 1 
HETATM 19 N N9 ENA . . . DA 3 180.599 142.473 199.935 1 21.85 ? N9 ENA 501 I 1 
HETATM 20 C C1' ENA . . . DA 3 180.147 143.682 199.216 1 21.85 ? C1' ENA 501 I 1 
HETATM 21 C C10 ENA . . . DA 3 185.264 140.027 200.625 1 21.85 ? C10 ENA 501 I 1 
HETATM 22 C C2' ENA . . . DA 3 179.397 143.428 197.935 1 21.85 ? C2' ENA 501 I 1 
HETATM 23 O O2' ENA . . . DA 3 179.286 144.415 200.057 1 21.85 ? O2' ENA 501 I 1 
HETATM 24 C C3' ENA . . . DA 3 178.254 144.414 197.954 1 21.85 ? C3' ENA 501 I 1 
HETATM 25 O O3' ENA . . . DA 3 178.346 145.252 196.801 1 21.85 ? O3' ENA 501 I 1 
HETATM 26 C C4' ENA . . . DA 3 178.429 145.194 199.249 1 21.85 ? C4' ENA 501 I 1 
HETATM 27 O O4' ENA . . . DA 3 180.263 143.657 196.814 1 21.85 ? O4' ENA 501 I 1 
HETATM 28 C C5' ENA . . . DA 3 177.182 145.374 200.091 1 21.85 ? C5' ENA 501 I 1 
HETATM 29 O O5' ENA . . . DA 3 177.667 145.835 201.348 1 21.85 ? O5' ENA 501 I 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    73 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#